Protein–RNA interactions for Protein: Q33E94

RFX4, Transcription factor RFX4, humanhuman

Predictions only

Length 735 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
RFX4Q33E94 TNIP1-220ENST00000610535 2726 ntTSL 5 BASIC16.57■□□□□ 0.24
RFX4Q33E94 SUZ12-201ENST00000322652 4491 ntAPPRIS P1 TSL 1 (best) BASIC16.57■□□□□ 0.24
RFX4Q33E94 SRGAP2B-207ENST00000641863 2367 ntAPPRIS P5 BASIC16.57■□□□□ 0.24
RFX4Q33E94 AK4-207ENST00000545314 6887 ntAPPRIS P1 TSL 1 (best) BASIC16.57■□□□□ 0.24
RFX4Q33E94 ZNF619-205ENST00000456778 2192 ntTSL 2 BASIC16.57■□□□□ 0.24
RFX4Q33E94 ERI1-203ENST00000519292 2107 ntAPPRIS P1 TSL 2 BASIC16.57■□□□□ 0.24
RFX4Q33E94 TSNARE1-204ENST00000519651 2110 ntAPPRIS ALT2 TSL 1 (best) BASIC16.57■□□□□ 0.24
RFX4Q33E94 UNC119-204ENST00000470125 2050 ntTSL 1 (best) BASIC16.57■□□□□ 0.24
RFX4Q33E94 CDC42BPG-201ENST00000342711 5742 ntAPPRIS P1 TSL 1 (best) BASIC16.57■□□□□ 0.24
RFX4Q33E94 ZNF296-201ENST00000303809 1744 ntAPPRIS P2 TSL 1 (best) BASIC16.56■□□□□ 0.24
RFX4Q33E94 PACRGL-203ENST00000444671 1720 ntTSL 2 BASIC16.56■□□□□ 0.24
RFX4Q33E94 PTPRK-218ENST00000525459 1722 ntTSL 2 BASIC16.56■□□□□ 0.24
RFX4Q33E94 GBA2-201ENST00000378088 1672 ntTSL 2 BASIC16.56■□□□□ 0.24
RFX4Q33E94 INF2-204ENST00000398337 1689 ntTSL 1 (best) BASIC16.56■□□□□ 0.24
RFX4Q33E94 VRK3-225ENST00000601912 1668 ntAPPRIS ALT2 TSL 5 BASIC16.56■□□□□ 0.24
RFX4Q33E94 ZIC4-209ENST00000473123 1481 ntAPPRIS P1 TSL 2 BASIC16.56■□□□□ 0.24
RFX4Q33E94 LINC00200-201ENST00000425630 2434 ntTSL 1 (best) BASIC16.56■□□□□ 0.24
RFX4Q33E94 RGS11-202ENST00000316163 2376 ntTSL 1 (best) BASIC16.56■□□□□ 0.24
RFX4Q33E94 CACNA1A-258ENST00000638029 7814 ntAPPRIS ALT2 TSL 5 BASIC16.56■□□□□ 0.24
RFX4Q33E94 SYNE4-201ENST00000324444 1354 ntAPPRIS P3 TSL 5 BASIC16.56■□□□□ 0.24
RFX4Q33E94 BEST2-202ENST00000549706 2183 ntAPPRIS P1 TSL 5 BASIC16.56■□□□□ 0.24
RFX4Q33E94 ASL-201ENST00000304874 2143 ntAPPRIS P1 TSL 1 (best) BASIC16.56■□□□□ 0.24
RFX4Q33E94 CDHR4-201ENST00000343366 1188 ntTSL 1 (best) BASIC16.56■□□□□ 0.24
RFX4Q33E94 AC073343.2-203ENST00000366167 564 ntTSL 4 BASIC16.56■□□□□ 0.24
RFX4Q33E94 PEX7-202ENST00000367756 680 ntTSL 3 BASIC16.56■□□□□ 0.24
RFX4Q33E94 IL15RA-208ENST00000397251 1046 ntAPPRIS ALT2 TSL 1 (best) BASIC16.56■□□□□ 0.24
RFX4Q33E94 DBNL-214ENST00000456905 1241 ntTSL 2 BASIC16.56■□□□□ 0.24
RFX4Q33E94 RPL29-202ENST00000466397 742 ntAPPRIS P1 TSL 2 BASIC16.56■□□□□ 0.24
RFX4Q33E94 SIVA1-207ENST00000556195 674 ntTSL 3 BASIC16.56■□□□□ 0.24
RFX4Q33E94 MIR4674-201ENST00000582457 87 ntBASIC16.56■□□□□ 0.24
RFX4Q33E94 AC008763.3-201ENST00000597959 777 ntAPPRIS P1 TSL 4 BASIC16.56■□□□□ 0.24
RFX4Q33E94 REXO1L10P-201ENST00000615707 1290 ntBASIC16.56■□□□□ 0.24
RFX4Q33E94 REXO1L12P-201ENST00000622156 912 ntBASIC16.56■□□□□ 0.24
RFX4Q33E94 MAP6-202ENST00000434603 4329 ntAPPRIS ALT2 TSL 1 (best) BASIC16.56■□□□□ 0.24
RFX4Q33E94 MID1IP1-202ENST00000378474 1889 ntAPPRIS P1 TSL 1 (best) BASIC16.56■□□□□ 0.24
RFX4Q33E94 FAM184A-214ENST00000621231 4048 ntTSL 5 BASIC16.56■□□□□ 0.24
RFX4Q33E94 KIF5C-201ENST00000435030 6931 ntAPPRIS P1 TSL 1 (best) BASIC16.56■□□□□ 0.24
RFX4Q33E94 AC003002.1-202ENST00000596755 1743 ntAPPRIS P1 BASIC16.56■□□□□ 0.24
RFX4Q33E94 REL-202ENST00000394479 2398 ntAPPRIS ALT2 TSL 1 (best) BASIC16.56■□□□□ 0.24
RFX4Q33E94 AP000347.2-202ENST00000421064 3041 ntTSL 1 (best) BASIC16.56■□□□□ 0.24
RFX4Q33E94 OS9-205ENST00000413095 1660 ntTSL 2 BASIC16.56■□□□□ 0.24
RFX4Q33E94 SLC29A1-208ENST00000393844 2326 ntAPPRIS P1 TSL 1 (best) BASIC16.56■□□□□ 0.24
RFX4Q33E94 TSC22D3-203ENST00000372383 2266 ntTSL 2 BASIC16.56■□□□□ 0.24
RFX4Q33E94 LINC01126-201ENST00000623515 1646 ntBASIC16.56■□□□□ 0.24
RFX4Q33E94 ADAMTSL5-201ENST00000330475 2857 ntAPPRIS P1 TSL 2 BASIC16.56■□□□□ 0.24
RFX4Q33E94 SPATA18-202ENST00000419395 2816 ntTSL 2 BASIC16.55■□□□□ 0.24
RFX4Q33E94 NFATC1-208ENST00000586434 2103 ntAPPRIS ALT2 TSL 1 (best) BASIC16.55■□□□□ 0.24
RFX4Q33E94 CARNS1-201ENST00000307823 3942 ntTSL 1 (best) BASIC16.55■□□□□ 0.24
RFX4Q33E94 MRGPRF-AS1-201ENST00000538407 1490 ntTSL 1 (best) BASIC16.55■□□□□ 0.24
RFX4Q33E94 CTNNAL1-204ENST00000374595 2522 ntAPPRIS ALT2 TSL 1 (best) BASIC16.55■□□□□ 0.24
RFX4Q33E94 MATN3-201ENST00000407540 2524 ntAPPRIS P2 TSL 1 (best) BASIC16.55■□□□□ 0.24
RFX4Q33E94 AL357673.1-201ENST00000637610 2542 ntAPPRIS P5 TSL 5 BASIC16.55■□□□□ 0.24
RFX4Q33E94 SERPINH1-212ENST00000530284 1358 ntTSL 1 (best) BASIC16.55■□□□□ 0.24
RFX4Q33E94 SHISA6-202ENST00000409168 7262 ntAPPRIS ALT2 TSL 1 (best) BASIC16.55■□□□□ 0.24
RFX4Q33E94 WFDC1-203ENST00000568638 1319 ntAPPRIS P1 TSL 2 BASIC16.55■□□□□ 0.24
RFX4Q33E94 EMC6-201ENST00000248378 653 ntAPPRIS P1 TSL 1 (best) BASIC16.55■□□□□ 0.24
RFX4Q33E94 AL360181.5-201ENST00000368554 1044 ntAPPRIS P1 TSL 2 BASIC16.55■□□□□ 0.24
RFX4Q33E94 NPM3-201ENST00000370110 877 ntAPPRIS P1 TSL 1 (best) BASIC16.55■□□□□ 0.24
RFX4Q33E94 UBB-203ENST00000395839 1012 ntAPPRIS P1 TSL 2 BASIC16.55■□□□□ 0.24
RFX4Q33E94 UBE2SP1-201ENST00000450587 669 ntBASIC16.55■□□□□ 0.24
RFX4Q33E94 AL445645.1-201ENST00000451318 1019 ntTSL 2 BASIC16.55■□□□□ 0.24
RFX4Q33E94 MRPL36-202ENST00000505059 610 ntAPPRIS P1 TSL 1 (best) BASIC16.55■□□□□ 0.24
RFX4Q33E94 CXCL2-202ENST00000508487 1218 ntAPPRIS P1 TSL 1 (best) BASIC16.55■□□□□ 0.24
RFX4Q33E94 CBLN3-202ENST00000555436 718 ntTSL 3 BASIC16.55■□□□□ 0.24
RFX4Q33E94 TGIF1-222ENST00000577543 729 ntTSL 3 BASIC16.55■□□□□ 0.24
RFX4Q33E94 TPSB2-201ENST00000606293 1165 ntAPPRIS ALT2 TSL 1 (best) BASIC16.55■□□□□ 0.24
RFX4Q33E94 AC113410.3-201ENST00000623366 203 ntBASIC16.55■□□□□ 0.24
RFX4Q33E94 LINC01451-201ENST00000623792 534 ntBASIC16.55■□□□□ 0.24
RFX4Q33E94 AC215522.2-202ENST00000633163 1143 ntTSL 5 BASIC16.55■□□□□ 0.24
RFX4Q33E94 FSCN1-201ENST00000382361 2777 ntAPPRIS P1 TSL 1 (best) BASIC16.55■□□□□ 0.24
RFX4Q33E94 SFT2D3-201ENST00000310981 3735 ntAPPRIS P1 BASIC16.55■□□□□ 0.24
RFX4Q33E94 AGO3-202ENST00000324350 1726 ntTSL 2 BASIC16.55■□□□□ 0.24
RFX4Q33E94 SPDYE5-203ENST00000625065 1700 ntAPPRIS P2 TSL 5 BASIC16.55■□□□□ 0.24
RFX4Q33E94 RABL2A-204ENST00000393167 2179 ntAPPRIS P3 TSL 1 (best) BASIC16.55■□□□□ 0.24
RFX4Q33E94 SEPT9-236ENST00000591088 1691 ntAPPRIS ALT2 TSL 2 BASIC16.55■□□□□ 0.24
RFX4Q33E94 NF2-202ENST00000338641 6025 ntAPPRIS P4 TSL 1 (best) BASIC16.55■□□□□ 0.24
RFX4Q33E94 ZIC5-201ENST00000267294 4639 ntAPPRIS P1 TSL 1 (best) BASIC16.55■□□□□ 0.24
RFX4Q33E94 PEX14-201ENST00000356607 1985 ntAPPRIS P1 TSL 1 (best) BASIC16.55■□□□□ 0.24
RFX4Q33E94 OLIG2-201ENST00000333337 3262 ntAPPRIS P1 BASIC16.55■□□□□ 0.24
RFX4Q33E94 PROK2-202ENST00000353065 1549 ntAPPRIS P1 TSL 1 (best) BASIC16.55■□□□□ 0.24
RFX4Q33E94 KDM6B-202ENST00000448097 5422 ntAPPRIS ALT2 TSL 5 BASIC16.55■□□□□ 0.24
RFX4Q33E94 CLDN7-203ENST00000538261 1923 ntTSL 5 BASIC16.55■□□□□ 0.24
RFX4Q33E94 TACC3-201ENST00000313288 2781 ntAPPRIS P1 TSL 1 (best) BASIC16.55■□□□□ 0.24
RFX4Q33E94 TLE2-217ENST00000590536 2344 ntAPPRIS ALT2 TSL 1 (best) BASIC16.54■□□□□ 0.24
RFX4Q33E94 PRSS36-207ENST00000569305 2723 ntAPPRIS ALT2 TSL 1 (best) BASIC16.54■□□□□ 0.24
RFX4Q33E94 RNF19A-201ENST00000341084 4285 ntAPPRIS P1 TSL 5 BASIC16.54■□□□□ 0.24
RFX4Q33E94 CCNC-207ENST00000518714 1426 ntTSL 5 BASIC16.54■□□□□ 0.24
RFX4Q33E94 KRT8P7-201ENST00000533003 1432 ntBASIC16.54■□□□□ 0.24
RFX4Q33E94 HOXB1-202ENST00000577092 1414 ntBASIC16.54■□□□□ 0.24
RFX4Q33E94 BTBD3-201ENST00000254977 4686 ntAPPRIS ALT1 TSL 2 BASIC16.54■□□□□ 0.24
RFX4Q33E94 NGFR-202ENST00000504201 1840 ntTSL 2 BASIC16.54■□□□□ 0.24
RFX4Q33E94 ADRB3-201ENST00000345060 2950 ntAPPRIS P1 TSL 1 (best) BASIC16.54■□□□□ 0.24
RFX4Q33E94 NR1H3-202ENST00000405576 1352 ntTSL 5 BASIC16.54■□□□□ 0.24
RFX4Q33E94 SLC25A3-211ENST00000548847 1369 ntTSL 5 BASIC16.54■□□□□ 0.24
RFX4Q33E94 DDRGK1-201ENST00000354488 1306 ntAPPRIS P1 TSL 1 (best) BASIC16.54■□□□□ 0.24
RFX4Q33E94 AC022898.2-201ENST00000616822 1312 ntBASIC16.54■□□□□ 0.24
RFX4Q33E94 TPPP3-201ENST00000290942 1116 ntAPPRIS P1 TSL 2 BASIC16.54■□□□□ 0.24
RFX4Q33E94 PRORSD1P-201ENST00000295112 541 ntBASIC16.54■□□□□ 0.24
RFX4Q33E94 PRSS3-201ENST00000342836 1144 ntTSL 1 (best) BASIC16.54■□□□□ 0.24
RFX4Q33E94 TPPP3-202ENST00000393957 1058 ntAPPRIS P1 TSL 1 (best) BASIC16.54■□□□□ 0.24
Retrieved 100 of 98,524 protein–RNA pairs in 44 ms