Protein–RNA interactions for Protein: Q2UY09

COL28A1, Collagen alpha-1(XXVIII) chain, humanhuman

Predictions only

Length 1,125 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL28A1Q2UY09 PMEPA1-202ENST00000341744 4845 ntAPPRIS P1 TSL 1 (best) BASIC17.09■□□□□ 0.33
COL28A1Q2UY09 TEKT5-201ENST00000283025 1612 ntAPPRIS P1 TSL 1 (best) BASIC17.09■□□□□ 0.33
COL28A1Q2UY09 TEAD4-201ENST00000358409 1637 ntTSL 1 (best) BASIC17.09■□□□□ 0.33
COL28A1Q2UY09 ZCCHC24-202ENST00000372336 4933 ntAPPRIS P1 TSL 1 (best) BASIC17.09■□□□□ 0.33
COL28A1Q2UY09 CALHM2-201ENST00000260743 1859 ntAPPRIS P1 TSL 1 (best) BASIC17.09■□□□□ 0.33
COL28A1Q2UY09 ZNF420-201ENST00000304239 1945 ntTSL 2 BASIC17.09■□□□□ 0.33
COL28A1Q2UY09 AL031658.1-201ENST00000449519 2013 ntTSL 2 BASIC17.09■□□□□ 0.33
COL28A1Q2UY09 TMEM8B-204ENST00000439587 2150 ntTSL 1 (best) BASIC17.09■□□□□ 0.33
COL28A1Q2UY09 SORCS3-202ENST00000369701 5757 ntAPPRIS P1 TSL 1 (best) BASIC17.09■□□□□ 0.33
COL28A1Q2UY09 TLK2-203ENST00000346027 3449 ntAPPRIS P3 TSL 1 (best) BASIC17.08■□□□□ 0.33
COL28A1Q2UY09 EPB41L3-207ENST00000545076 3190 ntAPPRIS ALT2 TSL 2 BASIC17.08■□□□□ 0.33
COL28A1Q2UY09 TWF1-201ENST00000395510 3045 ntAPPRIS P1 TSL 1 (best) BASIC17.08■□□□□ 0.33
COL28A1Q2UY09 RFTN1-201ENST00000334133 2982 ntAPPRIS P2 TSL 1 (best) BASIC17.08■□□□□ 0.33
COL28A1Q2UY09 RSPO4-201ENST00000217260 2707 ntAPPRIS P1 TSL 1 (best) BASIC17.08■□□□□ 0.33
COL28A1Q2UY09 CDK13-201ENST00000181839 7298 ntAPPRIS P4 TSL 1 (best) BASIC17.08■□□□□ 0.33
COL28A1Q2UY09 KRT15-203ENST00000393976 2394 ntAPPRIS P1 TSL 5 BASIC17.08■□□□□ 0.33
COL28A1Q2UY09 ANKRD13D-201ENST00000308440 2219 ntTSL 2 BASIC17.08■□□□□ 0.33
COL28A1Q2UY09 CASC2-205ENST00000454781 2216 ntTSL 1 (best) BASIC17.08■□□□□ 0.33
COL28A1Q2UY09 KLHL23-201ENST00000272797 2087 ntAPPRIS P1 TSL 2 BASIC17.08■□□□□ 0.33
COL28A1Q2UY09 FDXR-214ENST00000581530 1827 ntAPPRIS P3 TSL 1 (best) BASIC17.08■□□□□ 0.33
COL28A1Q2UY09 CLEC10A-201ENST00000254868 1797 ntAPPRIS P3 TSL 1 (best) BASIC17.08■□□□□ 0.33
COL28A1Q2UY09 SPAG1-206ENST00000520643 1723 ntTSL 2 BASIC17.08■□□□□ 0.32
COL28A1Q2UY09 TNFSF9-201ENST00000245817 1665 ntAPPRIS P1 TSL 1 (best) BASIC17.08■□□□□ 0.32
COL28A1Q2UY09 NFYC-AS1-201ENST00000606277 1687 ntBASIC17.08■□□□□ 0.32
COL28A1Q2UY09 CHRNG-201ENST00000389492 1398 ntTSL 1 (best) BASIC17.08■□□□□ 0.32
COL28A1Q2UY09 SFT2D1-201ENST00000361731 1079 ntAPPRIS P1 TSL 1 (best) BASIC17.08■□□□□ 0.32
COL28A1Q2UY09 PMEPA1-204ENST00000395814 800 ntTSL 3 BASIC17.08■□□□□ 0.32
COL28A1Q2UY09 RAB17-203ENST00000409576 466 ntTSL 3 BASIC17.08■□□□□ 0.32
COL28A1Q2UY09 AC254562.1-201ENST00000417586 456 ntBASIC17.08■□□□□ 0.32
COL28A1Q2UY09 AC092474.2-201ENST00000424288 719 ntBASIC17.08■□□□□ 0.32
COL28A1Q2UY09 CRCP-205ENST00000431089 942 ntTSL 2 BASIC17.08■□□□□ 0.32
COL28A1Q2UY09 EHMT1-216ENST00000493484 1182 ntTSL 3 BASIC17.08■□□□□ 0.32
COL28A1Q2UY09 CDKN2A-209ENST00000498628 926 ntTSL 2 BASIC17.08■□□□□ 0.32
COL28A1Q2UY09 AC013356.2-201ENST00000559730 729 ntTSL 3 BASIC17.08■□□□□ 0.32
COL28A1Q2UY09 AC087741.1-203ENST00000576824 820 ntTSL 3 BASIC17.08■□□□□ 0.32
COL28A1Q2UY09 PRR29-209ENST00000582540 967 ntTSL 2 BASIC17.08■□□□□ 0.32
COL28A1Q2UY09 GZMM-202ENST00000592501 941 ntTSL 3 BASIC17.08■□□□□ 0.32
COL28A1Q2UY09 AP000997.3-201ENST00000623333 2250 ntBASIC17.08■□□□□ 0.32
COL28A1Q2UY09 TFEB-203ENST00000358871 2188 ntTSL 1 (best) BASIC17.08■□□□□ 0.32
COL28A1Q2UY09 AC068446.2-201ENST00000500487 2165 ntTSL 2 BASIC17.08■□□□□ 0.32
COL28A1Q2UY09 CCDC17-209ENST00000528266 2181 ntAPPRIS P3 TSL 2 BASIC17.08■□□□□ 0.32
COL28A1Q2UY09 KANSL1L-203ENST00000418791 3562 ntTSL 1 (best) BASIC17.08■□□□□ 0.32
COL28A1Q2UY09 IL10RB-201ENST00000290200 1963 ntAPPRIS P1 TSL 1 (best) BASIC17.08■□□□□ 0.32
COL28A1Q2UY09 OPRD1-201ENST00000234961 9345 ntAPPRIS P1 TSL 1 (best) BASIC17.07■□□□□ 0.32
COL28A1Q2UY09 C19orf25-203ENST00000585675 1837 ntAPPRIS P1 TSL 1 (best) BASIC17.07■□□□□ 0.32
COL28A1Q2UY09 CACTIN-201ENST00000221899 2797 ntAPPRIS P1 TSL 1 (best) BASIC17.07■□□□□ 0.32
COL28A1Q2UY09 C6orf223-202ENST00000439969 2757 ntTSL 2 BASIC17.07■□□□□ 0.32
COL28A1Q2UY09 AP004609.1-201ENST00000498872 1646 ntTSL 1 (best) BASIC17.07■□□□□ 0.32
COL28A1Q2UY09 FAM3A-204ENST00000369643 1521 ntAPPRIS P1 TSL 2 BASIC17.07■□□□□ 0.32
COL28A1Q2UY09 TP73-AS1-210ENST00000637775 1455 ntBASIC17.07■□□□□ 0.32
COL28A1Q2UY09 RER1-202ENST00000378512 1404 ntTSL 1 (best) BASIC17.07■□□□□ 0.32
COL28A1Q2UY09 PCDHB18P-201ENST00000524813 2368 ntBASIC17.07■□□□□ 0.32
COL28A1Q2UY09 ACVRL1-202ENST00000419526 1356 ntTSL 2 BASIC17.07■□□□□ 0.32
COL28A1Q2UY09 RPS6KA1-203ENST00000374166 3131 ntTSL 5 BASIC17.07■□□□□ 0.32
COL28A1Q2UY09 KRT86-202ENST00000423955 2217 ntAPPRIS P1 TSL 2 BASIC17.07■□□□□ 0.32
COL28A1Q2UY09 SMIM24-201ENST00000215531 1329 ntAPPRIS P2 TSL 1 (best) BASIC17.07■□□□□ 0.32
COL28A1Q2UY09 TECR-201ENST00000215567 1171 ntAPPRIS P1 TSL 1 (best) BASIC17.07■□□□□ 0.32
COL28A1Q2UY09 TRAPPC3-203ENST00000373163 951 ntTSL 3 BASIC17.07■□□□□ 0.32
COL28A1Q2UY09 HCCS-203ENST00000380763 1000 ntAPPRIS P1 TSL 1 (best) BASIC17.07■□□□□ 0.32
COL28A1Q2UY09 AL451067.1-201ENST00000453111 394 ntTSL 2 BASIC17.07■□□□□ 0.32
COL28A1Q2UY09 AC091182.1-202ENST00000518765 713 ntTSL 2 BASIC17.07■□□□□ 0.32
COL28A1Q2UY09 MIR4469-201ENST00000583919 79 ntBASIC17.07■□□□□ 0.32
COL28A1Q2UY09 LUC7L2-210ENST00000619796 2783 ntTSL 1 (best) BASIC17.07■□□□□ 0.32
COL28A1Q2UY09 COBL-210ENST00000632460 1941 ntTSL 5 BASIC17.07■□□□□ 0.32
COL28A1Q2UY09 PLA2G7-201ENST00000274793 1882 ntAPPRIS P1 TSL 1 (best) BASIC17.07■□□□□ 0.32
COL28A1Q2UY09 ARSA-203ENST00000395619 1824 ntAPPRIS P1 TSL 5 BASIC17.07■□□□□ 0.32
COL28A1Q2UY09 DPYSL3-202ENST00000398514 5309 ntAPPRIS P1 TSL 1 (best) BASIC17.07■□□□□ 0.32
COL28A1Q2UY09 ZDHHC23-201ENST00000330212 3778 ntAPPRIS P2 TSL 1 (best) BASIC17.07■□□□□ 0.32
COL28A1Q2UY09 SETMAR-206ENST00000430981 1671 ntTSL 1 (best) BASIC17.07■□□□□ 0.32
COL28A1Q2UY09 ZNF787-202ENST00000587279 1657 ntTSL 2 BASIC17.07■□□□□ 0.32
COL28A1Q2UY09 LZTS2-202ENST00000370223 2883 ntAPPRIS P1 TSL 1 (best) BASIC17.07■□□□□ 0.32
COL28A1Q2UY09 SLC22A23-203ENST00000406686 5658 ntAPPRIS P2 TSL 5 BASIC17.06■□□□□ 0.32
COL28A1Q2UY09 SNAI3-AS1-205ENST00000568633 2096 ntBASIC17.06■□□□□ 0.32
COL28A1Q2UY09 ADPGK-201ENST00000311669 2557 ntAPPRIS P1 TSL 2 BASIC17.06■□□□□ 0.32
COL28A1Q2UY09 ACADS-201ENST00000242592 1950 ntAPPRIS P1 TSL 1 (best) BASIC17.06■□□□□ 0.32
COL28A1Q2UY09 FNDC8-201ENST00000158009 1388 ntAPPRIS P1 TSL 1 (best) BASIC17.06■□□□□ 0.32
COL28A1Q2UY09 DIO3OS-212ENST00000557661 1937 ntTSL 1 (best) BASIC17.06■□□□□ 0.32
COL28A1Q2UY09 HEXDC-203ENST00000577944 1820 ntTSL 5 BASIC17.06■□□□□ 0.32
COL28A1Q2UY09 AL357033.4-201ENST00000617703 1807 ntBASIC17.06■□□□□ 0.32
COL28A1Q2UY09 GLIS1-201ENST00000312233 2812 ntAPPRIS P2 TSL 2 BASIC17.06■□□□□ 0.32
COL28A1Q2UY09 GLIS1-202ENST00000628545 2807 ntAPPRIS ALT2 TSL 5 BASIC17.06■□□□□ 0.32
COL28A1Q2UY09 HELT-201ENST00000338875 1008 ntTSL 1 (best) BASIC17.06■□□□□ 0.32
COL28A1Q2UY09 PIP4K2A-202ENST00000376573 3802 ntAPPRIS P1 TSL 1 (best) BASIC17.06■□□□□ 0.32
COL28A1Q2UY09 CENPM-204ENST00000402420 688 ntTSL 5 BASIC17.06■□□□□ 0.32
COL28A1Q2UY09 AC012363.1-201ENST00000455707 575 ntTSL 4 BASIC17.06■□□□□ 0.32
COL28A1Q2UY09 AL133375.1-201ENST00000500590 980 ntTSL 5 BASIC17.06■□□□□ 0.32
COL28A1Q2UY09 FAU-209ENST00000531743 697 ntAPPRIS P1 TSL 1 (best) BASIC17.06■□□□□ 0.32
COL28A1Q2UY09 CHRNA5-203ENST00000559554 1051 ntTSL 3 BASIC17.06■□□□□ 0.32
COL28A1Q2UY09 NAA60-217ENST00000572942 1089 ntTSL 2 BASIC17.06■□□□□ 0.32
COL28A1Q2UY09 MCRIP1-211ENST00000576679 751 ntTSL 2 BASIC17.06■□□□□ 0.32
COL28A1Q2UY09 TNFRSF13B-203ENST00000579315 600 ntAPPRIS ALT2 TSL 3 BASIC17.06■□□□□ 0.32
COL28A1Q2UY09 IFT20-209ENST00000579419 787 ntAPPRIS ALT1 TSL 3 BASIC17.06■□□□□ 0.32
COL28A1Q2UY09 C19orf25-210ENST00000591027 574 ntTSL 4 BASIC17.06■□□□□ 0.32
COL28A1Q2UY09 ZNF324B-203ENST00000594214 564 ntTSL 2 BASIC17.06■□□□□ 0.32
COL28A1Q2UY09 AC004130.1-202ENST00000603156 666 ntTSL 2 BASIC17.06■□□□□ 0.32
COL28A1Q2UY09 AC008735.5-201ENST00000623544 497 ntBASIC17.06■□□□□ 0.32
COL28A1Q2UY09 IGFBP4-201ENST00000269593 2200 ntAPPRIS P1 TSL 1 (best) BASIC17.06■□□□□ 0.32
COL28A1Q2UY09 CDK4-202ENST00000312990 1650 ntTSL 1 (best) BASIC17.06■□□□□ 0.32
COL28A1Q2UY09 AKT1S1-207ENST00000391835 3075 ntTSL 1 (best) BASIC17.06■□□□□ 0.32
COL28A1Q2UY09 EGLN2-201ENST00000303961 2102 ntAPPRIS P1 TSL 1 (best) BASIC17.06■□□□□ 0.32
Retrieved 100 of 98,524 protein–RNA pairs in 49.2 ms