Protein–RNA interactions for Protein: P55318

FOXA3, Hepatocyte nuclear factor 3-gamma, humanhuman

Predicted RBP Predictions only

Length 350 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
FOXA3P55318 CGB7-202ENST00000596965 1949 ntAPPRIS P1 TSL 2 BASIC13.4□□□□□ -0.26
FOXA3P55318 TPR-209ENST00000613151 2478 ntTSL 5 BASIC13.4□□□□□ -0.26
FOXA3P55318 MRPL3-202ENST00000425847 1457 ntTSL 2 BASIC13.4□□□□□ -0.26
FOXA3P55318 HSPB6-201ENST00000004982 1457 ntAPPRIS P1 TSL 1 (best) BASIC13.4□□□□□ -0.26
FOXA3P55318 AC008393.1-201ENST00000499601 1454 ntTSL 1 (best) BASIC13.4□□□□□ -0.26
FOXA3P55318 AGGF1P2-201ENST00000426656 2106 ntBASIC13.4□□□□□ -0.26
FOXA3P55318 EPB41L3-202ENST00000342933 4270 ntAPPRIS ALT2 TSL 5 BASIC13.4□□□□□ -0.26
FOXA3P55318 PRRT4-205ENST00000489835 2313 ntTSL 1 (best) BASIC13.4□□□□□ -0.26
FOXA3P55318 OS9-205ENST00000413095 1660 ntTSL 2 BASIC13.4□□□□□ -0.26
FOXA3P55318 AC055811.2-201ENST00000427497 1693 ntAPPRIS P1 TSL 1 (best) BASIC13.4□□□□□ -0.26
FOXA3P55318 TMEM57-202ENST00000399766 3294 ntTSL 1 (best) BASIC13.4□□□□□ -0.26
FOXA3P55318 LETM2-202ENST00000379957 1873 ntAPPRIS ALT2 TSL 5 BASIC13.4□□□□□ -0.26
FOXA3P55318 TMEM119-201ENST00000392806 2707 ntAPPRIS P2 TSL 1 (best) BASIC13.4□□□□□ -0.27
FOXA3P55318 BCL11A-201ENST00000335712 5942 ntTSL 1 (best) BASIC13.4□□□□□ -0.27
FOXA3P55318 CACNA2D3-201ENST00000288197 3671 ntAPPRIS ALT2 TSL 1 (best) BASIC13.4□□□□□ -0.27
FOXA3P55318 CACNA2D3-206ENST00000474759 3675 ntAPPRIS P2 TSL 1 (best) BASIC13.4□□□□□ -0.27
FOXA3P55318 FBXO21-201ENST00000330622 2906 ntAPPRIS P3 TSL 1 (best) BASIC13.4□□□□□ -0.27
FOXA3P55318 WAC-203ENST00000354911 3042 ntAPPRIS P1 TSL 1 (best) BASIC13.39□□□□□ -0.27
FOXA3P55318 PML-206ENST00000395135 2199 ntAPPRIS ALT2 TSL 1 (best) BASIC13.39□□□□□ -0.27
FOXA3P55318 ZBTB16-202ENST00000392996 2287 ntAPPRIS P1 TSL 1 (best) BASIC13.39□□□□□ -0.27
FOXA3P55318 TLE2-204ENST00000455444 2253 ntTSL 5 BASIC13.39□□□□□ -0.27
FOXA3P55318 ATG101-201ENST00000336854 1439 ntAPPRIS P1 TSL 1 (best) BASIC13.39□□□□□ -0.27
FOXA3P55318 KHDC1-202ENST00000370384 1430 ntAPPRIS ALT2 TSL 1 (best) BASIC13.39□□□□□ -0.27
FOXA3P55318 ST6GALNAC6-216ENST00000622357 2396 ntAPPRIS ALT1 TSL 1 (best) BASIC13.39□□□□□ -0.27
FOXA3P55318 AC068831.1-204ENST00000501381 1621 ntTSL 2 BASIC13.39□□□□□ -0.27
FOXA3P55318 PCDHA6-203ENST00000529310 5374 ntAPPRIS P1 TSL 1 (best) BASIC13.39□□□□□ -0.27
FOXA3P55318 SYNGR2-206ENST00000589711 2041 ntTSL 5 BASIC13.39□□□□□ -0.27
FOXA3P55318 MYB-201ENST00000316528 3571 ntTSL 5 BASIC13.39□□□□□ -0.27
FOXA3P55318 MYB-241ENST00000616088 3573 ntTSL 5 BASIC13.39□□□□□ -0.27
FOXA3P55318 AL365277.1-202ENST00000331856 2241 ntTSL 2 BASIC13.39□□□□□ -0.27
FOXA3P55318 VARS2-212ENST00000542001 4064 ntAPPRIS P1 TSL 1 (best) BASIC13.39□□□□□ -0.27
FOXA3P55318 FGFR4-201ENST00000292408 3122 ntAPPRIS P4 TSL 1 (best) BASIC13.39□□□□□ -0.27
FOXA3P55318 ZNF767P-201ENST00000463567 3520 ntTSL 2 BASIC13.39□□□□□ -0.27
FOXA3P55318 IFI27L2-201ENST00000238609 511 ntAPPRIS P1 TSL 1 (best) BASIC13.39□□□□□ -0.27
FOXA3P55318 CDC42EP5-201ENST00000301200 864 ntAPPRIS P1 TSL 1 (best) BASIC13.39□□□□□ -0.27
FOXA3P55318 DCXR-201ENST00000306869 887 ntAPPRIS P1 TSL 1 (best) BASIC13.39□□□□□ -0.27
FOXA3P55318 PLAC9-202ENST00000372267 472 ntAPPRIS ALT2 TSL 3 BASIC13.39□□□□□ -0.27
FOXA3P55318 MRPS26-201ENST00000380325 1127 ntAPPRIS P1 TSL 1 (best) BASIC13.39□□□□□ -0.27
FOXA3P55318 EPHA5-AS1-202ENST00000509473 1177 ntTSL 1 (best) BASIC13.39□□□□□ -0.27
FOXA3P55318 AC093752.1-201ENST00000511950 605 ntTSL 4 BASIC13.39□□□□□ -0.27
FOXA3P55318 AC006435.1-201ENST00000571775 1065 ntTSL 5 BASIC13.39□□□□□ -0.27
FOXA3P55318 AL032819.3-201ENST00000640283 925 ntAPPRIS P1 TSL 5 BASIC13.39□□□□□ -0.27
FOXA3P55318 FAM3A-203ENST00000369641 1359 ntTSL 5 BASIC13.39□□□□□ -0.27
FOXA3P55318 AC009102.3-201ENST00000623118 1491 ntBASIC13.39□□□□□ -0.27
FOXA3P55318 PTPRN2-201ENST00000389413 4723 ntTSL 1 (best) BASIC13.39□□□□□ -0.27
FOXA3P55318 SNX16-201ENST00000345957 1853 ntAPPRIS P1 TSL 1 (best) BASIC13.39□□□□□ -0.27
FOXA3P55318 HNRNPA3-201ENST00000392524 2067 ntAPPRIS P3 TSL 5 BASIC13.39□□□□□ -0.27
FOXA3P55318 PPP2R2B-206ENST00000453001 2569 ntTSL 1 (best) BASIC13.39□□□□□ -0.27
FOXA3P55318 C7orf31-201ENST00000283905 2673 ntAPPRIS P1 TSL 1 (best) BASIC13.39□□□□□ -0.27
FOXA3P55318 WASHC2C-202ENST00000359860 4471 ntAPPRIS ALT2 TSL 5 BASIC13.39□□□□□ -0.27
FOXA3P55318 PIGQ-201ENST00000026218 2846 ntTSL 1 (best) BASIC13.39□□□□□ -0.27
FOXA3P55318 CTNNBL1-201ENST00000361383 1925 ntAPPRIS P2 TSL 1 (best) BASIC13.39□□□□□ -0.27
FOXA3P55318 AL163051.1-201ENST00000569214 1512 ntBASIC13.39□□□□□ -0.27
FOXA3P55318 SH3BP2-207ENST00000503393 9158 ntTSL 1 (best) BASIC13.39□□□□□ -0.27
FOXA3P55318 SPOCK2-202ENST00000373109 5445 ntAPPRIS P2 TSL 1 (best) BASIC13.38□□□□□ -0.27
FOXA3P55318 RNF168-201ENST00000318037 5347 ntAPPRIS P1 TSL 1 (best) BASIC13.38□□□□□ -0.27
FOXA3P55318 WDR45B-201ENST00000392325 2587 ntAPPRIS P1 TSL 1 (best) BASIC13.38□□□□□ -0.27
FOXA3P55318 SEPHS2-201ENST00000478753 2551 ntAPPRIS P1 BASIC13.38□□□□□ -0.27
FOXA3P55318 SLC30A1-201ENST00000367001 5474 ntAPPRIS P1 TSL 1 (best) BASIC13.38□□□□□ -0.27
FOXA3P55318 SHTN1-203ENST00000392901 2190 ntAPPRIS ALT2 TSL 2 BASIC13.38□□□□□ -0.27
FOXA3P55318 APLN-201ENST00000429967 3205 ntAPPRIS P1 TSL 1 (best) BASIC13.38□□□□□ -0.27
FOXA3P55318 EXO5-202ENST00000358527 1892 ntAPPRIS P1 TSL 1 (best) BASIC13.38□□□□□ -0.27
FOXA3P55318 ZNF496-201ENST00000294753 5336 ntAPPRIS P1 TSL 1 (best) BASIC13.38□□□□□ -0.27
FOXA3P55318 FYTTD1-205ENST00000424384 1758 ntTSL 2 BASIC13.38□□□□□ -0.27
FOXA3P55318 FSCN2-201ENST00000334850 1551 ntTSL 5 BASIC13.38□□□□□ -0.27
FOXA3P55318 MPPED1-202ENST00000417669 3657 ntAPPRIS P1 TSL 5 BASIC13.38□□□□□ -0.27
FOXA3P55318 KCNS1-201ENST00000306117 4538 ntAPPRIS P1 TSL 1 (best) BASIC13.38□□□□□ -0.27
FOXA3P55318 MYH14-210ENST00000601313 6896 ntAPPRIS ALT2 TSL 1 (best) BASIC13.38□□□□□ -0.27
FOXA3P55318 SACS-AS1-201ENST00000443092 2234 ntTSL 2 BASIC13.38□□□□□ -0.27
FOXA3P55318 ABR-203ENST00000536794 2213 ntTSL 2 BASIC13.38□□□□□ -0.27
FOXA3P55318 PSPN-201ENST00000245810 471 ntAPPRIS P1 TSL 1 (best) BASIC13.38□□□□□ -0.27
FOXA3P55318 PIN1-201ENST00000247970 997 ntAPPRIS P1 TSL 1 (best) BASIC13.38□□□□□ -0.27
FOXA3P55318 MED10-201ENST00000255764 1141 ntAPPRIS P1 TSL 1 (best) BASIC13.38□□□□□ -0.27
FOXA3P55318 MIR149-201ENST00000384879 89 ntBASIC13.38□□□□□ -0.27
FOXA3P55318 IL15RA-207ENST00000397250 584 ntTSL 2 BASIC13.38□□□□□ -0.27
FOXA3P55318 METTL15-202ENST00000403099 795 ntTSL 5 BASIC13.38□□□□□ -0.27
FOXA3P55318 KIRREL3-AS3-201ENST00000404882 831 ntBASIC13.38□□□□□ -0.27
FOXA3P55318 LINC00636-201ENST00000494231 1264 ntTSL 1 (best) BASIC13.38□□□□□ -0.27
FOXA3P55318 UNC93B4-201ENST00000505679 747 ntBASIC13.38□□□□□ -0.27
FOXA3P55318 IL15RA-215ENST00000528354 1037 ntTSL 2 BASIC13.38□□□□□ -0.27
FOXA3P55318 PSME3-210ENST00000590720 998 ntAPPRIS P1 TSL 1 (best) BASIC13.38□□□□□ -0.27
FOXA3P55318 IL15RA-220ENST00000620345 1115 ntAPPRIS ALT2 TSL 1 (best) BASIC13.38□□□□□ -0.27
FOXA3P55318 SLC12A5-217ENST00000626937 1224 ntTSL 1 (best) BASIC13.38□□□□□ -0.27
FOXA3P55318 MYC-209ENST00000641252 345 ntBASIC13.38□□□□□ -0.27
FOXA3P55318 ZSWIM8-201ENST00000398706 6062 ntTSL 2 BASIC13.38□□□□□ -0.27
FOXA3P55318 MAP3K3-202ENST00000361733 3529 ntAPPRIS P3 TSL 1 (best) BASIC13.38□□□□□ -0.27
FOXA3P55318 COQ7-201ENST00000321998 2657 ntAPPRIS P3 TSL 1 (best) BASIC13.38□□□□□ -0.27
FOXA3P55318 TLE3-205ENST00000539550 2464 ntTSL 2 BASIC13.38□□□□□ -0.27
FOXA3P55318 CROCC-201ENST00000375541 6656 ntAPPRIS P1 TSL 5 BASIC13.38□□□□□ -0.27
FOXA3P55318 YTHDF3-215ENST00000621957 2387 ntAPPRIS ALT1 TSL 5 BASIC13.38□□□□□ -0.27
FOXA3P55318 PTPN5-202ENST00000396166 2299 ntTSL 2 BASIC13.38□□□□□ -0.27
FOXA3P55318 RBPJ-205ENST00000355476 5990 ntAPPRIS P3 TSL 1 (best) BASIC13.38□□□□□ -0.27
FOXA3P55318 CHST3-201ENST00000373115 6970 ntAPPRIS P1 TSL 1 (best) BASIC13.38□□□□□ -0.27
FOXA3P55318 JADE2-201ENST00000282605 2748 ntAPPRIS P1 TSL 2 BASIC13.38□□□□□ -0.27
FOXA3P55318 LIN54-204ENST00000505397 2742 ntAPPRIS P1 TSL 5 BASIC13.38□□□□□ -0.27
FOXA3P55318 ELFN2-208ENST00000430883 1970 ntTSL 2 BASIC13.38□□□□□ -0.27
FOXA3P55318 FRMPD4-201ENST00000380682 8465 ntAPPRIS P2 TSL 1 (best) BASIC13.38□□□□□ -0.27
FOXA3P55318 GP5-201ENST00000401815 3534 ntAPPRIS P1 BASIC13.38□□□□□ -0.27
FOXA3P55318 PDK1-203ENST00000410055 2990 ntAPPRIS P3 TSL 1 (best) BASIC13.38□□□□□ -0.27
FOXA3P55318 NGFR-201ENST00000172229 3417 ntAPPRIS P1 TSL 1 (best) BASIC13.38□□□□□ -0.27
Retrieved 100 of 98,524 protein–RNA pairs in 26.9 ms