Protein–RNA interactions for Protein: P49916

LIG3, DNA ligase 3, humanhuman

Predictions only

Length 1,009 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
LIG3P49916 TMEFF2-201ENST00000272771 2604 ntAPPRIS P1 TSL 1 (best) BASIC18.73■□□□□ 0.59
LIG3P49916 CASKIN2-205ENST00000581870 1612 ntTSL 2 BASIC18.73■□□□□ 0.59
LIG3P49916 LUC7L-202ENST00000337351 2097 ntTSL 1 (best) BASIC18.73■□□□□ 0.59
LIG3P49916 KLC1-202ENST00000334553 2524 ntTSL 5 BASIC18.73■□□□□ 0.59
LIG3P49916 KRT81-202ENST00000615839 1505 ntAPPRIS ALT2 TSL 5 BASIC18.73■□□□□ 0.59
LIG3P49916 CD99P1-204ENST00000435581 2788 ntTSL 2 BASIC18.73■□□□□ 0.59
LIG3P49916 GATA3-201ENST00000346208 2654 ntAPPRIS P3 TSL 1 (best) BASIC18.73■□□□□ 0.59
LIG3P49916 BRPF1-201ENST00000383829 4736 ntAPPRIS ALT1 TSL 1 (best) BASIC18.73■□□□□ 0.59
LIG3P49916 NAIF1-201ENST00000373078 3399 ntAPPRIS P1 TSL 1 (best) BASIC18.73■□□□□ 0.59
LIG3P49916 RUVBL1-202ENST00000464873 2126 ntTSL 2 BASIC18.73■□□□□ 0.59
LIG3P49916 XYLT2-203ENST00000507602 2107 ntTSL 2 BASIC18.73■□□□□ 0.59
LIG3P49916 HNF1A-216ENST00000617366 2473 ntTSL 1 (best) BASIC18.73■□□□□ 0.59
LIG3P49916 NUDT16L1-201ENST00000304301 1349 ntAPPRIS P1 TSL 1 (best) BASIC18.73■□□□□ 0.59
LIG3P49916 TSSC4-201ENST00000333256 1686 ntAPPRIS P3 TSL 1 (best) BASIC18.73■□□□□ 0.59
LIG3P49916 MATN4-201ENST00000353917 1657 ntTSL 5 BASIC18.73■□□□□ 0.59
LIG3P49916 CBS-202ENST00000359624 2353 ntAPPRIS P1 TSL 1 (best) BASIC18.73■□□□□ 0.59
LIG3P49916 CBSL-203ENST00000618024 2353 ntAPPRIS P1 TSL 1 (best) BASIC18.73■□□□□ 0.59
LIG3P49916 RRM2-202ENST00000360566 3673 ntTSL 1 (best) BASIC18.72■□□□□ 0.59
LIG3P49916 GMPPB-201ENST00000308375 3217 ntTSL 2 BASIC18.72■□□□□ 0.59
LIG3P49916 SLC29A2-202ENST00000357440 2514 ntAPPRIS P1 TSL 1 (best) BASIC18.72■□□□□ 0.59
LIG3P49916 PGAP3-203ENST00000378011 2533 ntTSL 2 BASIC18.72■□□□□ 0.59
LIG3P49916 C6orf118-201ENST00000230301 1812 ntAPPRIS P1 TSL 1 (best) BASIC18.72■□□□□ 0.59
LIG3P49916 RASSF7-205ENST00000454668 1450 ntAPPRIS ALT2 TSL 1 (best) BASIC18.72■□□□□ 0.59
LIG3P49916 ZCCHC18-203ENST00000537356 2907 ntAPPRIS P1 TSL 5 BASIC18.72■□□□□ 0.59
LIG3P49916 TMTC2-201ENST00000321196 5681 ntAPPRIS P1 TSL 1 (best) BASIC18.72■□□□□ 0.59
LIG3P49916 TAX1BP3-201ENST00000225525 1377 ntAPPRIS P1 TSL 1 (best) BASIC18.72■□□□□ 0.59
LIG3P49916 PP12613-201ENST00000424958 2230 ntBASIC18.72■□□□□ 0.59
LIG3P49916 ICA1-208ENST00000407906 1615 ntTSL 1 (best) BASIC18.72■□□□□ 0.59
LIG3P49916 L1CAM-205ENST00000370060 5113 ntAPPRIS P4 TSL 5 BASIC18.72■□□□□ 0.59
LIG3P49916 LCE4A-202ENST00000368777 672 ntAPPRIS P1 TSL 2 BASIC18.72■□□□□ 0.59
LIG3P49916 IMP3-202ENST00000403490 1237 ntAPPRIS P1 BASIC18.72■□□□□ 0.59
LIG3P49916 PLCB1-204ENST00000404098 1260 ntTSL 3 BASIC18.72■□□□□ 0.59
LIG3P49916 HDAC11-AS1-201ENST00000424112 515 ntTSL 2 BASIC18.72■□□□□ 0.59
LIG3P49916 TMA7-201ENST00000438607 561 ntAPPRIS P1 TSL 1 (best) BASIC18.72■□□□□ 0.59
LIG3P49916 MAP3K13-213ENST00000454237 526 ntTSL 3 BASIC18.72■□□□□ 0.59
LIG3P49916 LY6E-210ENST00000521182 1079 ntTSL 1 (best) BASIC18.72■□□□□ 0.59
LIG3P49916 NT5C-211ENST00000582170 653 ntTSL 3 BASIC18.72■□□□□ 0.59
LIG3P49916 UBA52-210ENST00000598780 668 ntAPPRIS P1 TSL 3 BASIC18.72■□□□□ 0.59
LIG3P49916 FGF4-201ENST00000168712 3233 ntAPPRIS P1 TSL 1 (best) BASIC18.72■□□□□ 0.59
LIG3P49916 CPXM1-201ENST00000380605 2391 ntAPPRIS P1 TSL 1 (best) BASIC18.72■□□□□ 0.59
LIG3P49916 AC132872.2-201ENST00000581303 2368 ntTSL 5 BASIC18.72■□□□□ 0.59
LIG3P49916 SUSD4-202ENST00000343846 3480 ntAPPRIS P1 TSL 2 BASIC18.72■□□□□ 0.59
LIG3P49916 AC140125.2-201ENST00000502515 1517 ntTSL 1 (best) BASIC18.72■□□□□ 0.59
LIG3P49916 FGD5-201ENST00000285046 5720 ntAPPRIS P1 TSL 1 (best) BASIC18.72■□□□□ 0.59
LIG3P49916 ZNF787-202ENST00000587279 1657 ntTSL 2 BASIC18.72■□□□□ 0.59
LIG3P49916 BMI1-201ENST00000376663 3428 ntAPPRIS P1 TSL 1 (best) BASIC18.72■□□□□ 0.59
LIG3P49916 RNPS1-203ENST00000397086 2069 ntAPPRIS P1 TSL 1 (best) BASIC18.72■□□□□ 0.59
LIG3P49916 NSD3-201ENST00000316985 3995 ntTSL 1 (best) BASIC18.72■□□□□ 0.59
LIG3P49916 ZNF133-211ENST00000538547 2245 ntTSL 2 BASIC18.72■□□□□ 0.59
LIG3P49916 DNAJC28-204ENST00000617313 2237 ntAPPRIS P1 TSL 5 BASIC18.72■□□□□ 0.59
LIG3P49916 NDRG2-227ENST00000554143 1980 ntAPPRIS ALT1 TSL 2 BASIC18.72■□□□□ 0.59
LIG3P49916 BMS1P4-202ENST00000584747 1716 ntTSL 1 (best) BASIC18.71■□□□□ 0.59
LIG3P49916 ALOX12-201ENST00000251535 2358 ntAPPRIS P1 TSL 1 (best) BASIC18.71■□□□□ 0.59
LIG3P49916 CCNA2-201ENST00000274026 2797 ntAPPRIS P1 TSL 1 (best) BASIC18.71■□□□□ 0.59
LIG3P49916 AGBL5-202ENST00000360131 3177 ntAPPRIS P3 TSL 1 (best) BASIC18.71■□□□□ 0.59
LIG3P49916 UCHL5-206ENST00000367455 5327 ntAPPRIS P3 TSL 1 (best) BASIC18.71■□□□□ 0.59
LIG3P49916 CHTOP-205ENST00000403433 1923 ntAPPRIS ALT2 TSL 5 BASIC18.71■□□□□ 0.59
LIG3P49916 TSPAN14-202ENST00000341863 1037 ntTSL 5 BASIC18.71■□□□□ 0.59
LIG3P49916 CDHR4-201ENST00000343366 1188 ntTSL 1 (best) BASIC18.71■□□□□ 0.59
LIG3P49916 PHOSPHO2-201ENST00000359744 1125 ntAPPRIS P1 TSL 1 (best) BASIC18.71■□□□□ 0.59
LIG3P49916 ENSA-205ENST00000361532 792 ntTSL 2 BASIC18.71■□□□□ 0.59
LIG3P49916 TBC1D4-202ENST00000377636 6364 ntAPPRIS P3 TSL 2 BASIC18.71■□□□□ 0.59
LIG3P49916 AC019068.1-202ENST00000483218 768 ntTSL 3 BASIC18.71■□□□□ 0.59
LIG3P49916 REEP1-207ENST00000535845 1196 ntTSL 2 BASIC18.71■□□□□ 0.59
LIG3P49916 AC011773.3-202ENST00000549291 790 ntTSL 3 BASIC18.71■□□□□ 0.59
LIG3P49916 FCGBP-203ENST00000620799 4926 ntTSL 5 BASIC18.71■□□□□ 0.59
LIG3P49916 SLC52A1-201ENST00000254853 2377 ntAPPRIS P1 TSL 1 (best) BASIC18.71■□□□□ 0.59
LIG3P49916 MYC-207ENST00000621592 2366 ntAPPRIS ALT1 TSL 1 (best) BASIC18.71■□□□□ 0.59
LIG3P49916 BANP-227ENST00000626016 2144 ntTSL 2 BASIC18.71■□□□□ 0.59
LIG3P49916 APOLD1-202ENST00000356591 4646 ntAPPRIS P1 TSL 1 (best) BASIC18.71■□□□□ 0.59
LIG3P49916 FO681492.1-201ENST00000623662 5321 ntAPPRIS P5 TSL 2 BASIC18.71■□□□□ 0.59
LIG3P49916 CACNA2D2-201ENST00000266039 5476 ntAPPRIS ALT2 TSL 1 (best) BASIC18.71■□□□□ 0.59
LIG3P49916 JADE2-201ENST00000282605 2748 ntAPPRIS P1 TSL 2 BASIC18.71■□□□□ 0.59
LIG3P49916 ZNF618-203ENST00000374126 3018 ntAPPRIS ALT2 TSL 1 (best) BASIC18.71■□□□□ 0.59
LIG3P49916 LINC00094-205ENST00000603928 5722 ntAPPRIS ALT2 TSL 2 BASIC18.71■□□□□ 0.58
LIG3P49916 AP2M1-201ENST00000292807 1931 ntAPPRIS P4 TSL 5 BASIC18.7■□□□□ 0.58
LIG3P49916 CCK-202ENST00000396169 1527 ntAPPRIS P1 TSL 1 (best) BASIC18.7■□□□□ 0.58
LIG3P49916 RTN1-201ENST00000267484 3435 ntAPPRIS P4 TSL 1 (best) BASIC18.7■□□□□ 0.58
LIG3P49916 ZMYM3-203ENST00000373981 1841 ntTSL 1 (best) BASIC18.7■□□□□ 0.58
LIG3P49916 MAGED2-213ENST00000627068 1811 ntAPPRIS ALT2 TSL 5 BASIC18.7■□□□□ 0.58
LIG3P49916 HOTAIR-201ENST00000424518 2421 ntTSL 5 BASIC18.7■□□□□ 0.58
LIG3P49916 PLCH2-203ENST00000378486 4837 ntAPPRIS P1 TSL 1 (best) BASIC18.7■□□□□ 0.58
LIG3P49916 PLCH2-204ENST00000419816 4837 ntAPPRIS P1 TSL 5 BASIC18.7■□□□□ 0.58
LIG3P49916 CTSA-201ENST00000191018 1898 ntTSL 1 (best) BASIC18.7■□□□□ 0.58
LIG3P49916 AES-201ENST00000221561 1884 ntTSL 1 (best) BASIC18.7■□□□□ 0.58
LIG3P49916 CSNK2A2-201ENST00000262506 1701 ntAPPRIS P1 TSL 1 (best) BASIC18.7■□□□□ 0.58
LIG3P49916 GRIN2C-202ENST00000347612 2929 ntAPPRIS ALT2 TSL 1 (best) BASIC18.7■□□□□ 0.58
LIG3P49916 DMD-208ENST00000378680 1858 ntTSL 1 (best) BASIC18.7■□□□□ 0.58
LIG3P49916 SLC10A3-203ENST00000393586 1893 ntTSL 5 BASIC18.7■□□□□ 0.58
LIG3P49916 LAT2-204ENST00000398475 2453 ntAPPRIS P2 TSL 1 (best) BASIC18.7■□□□□ 0.58
LIG3P49916 SYNC-202ENST00000409190 3398 ntAPPRIS P3 TSL 2 BASIC18.7■□□□□ 0.58
LIG3P49916 HOMER2P1-201ENST00000455653 964 ntBASIC18.7■□□□□ 0.58
LIG3P49916 APBB3-216ENST00000511201 1014 ntTSL 5 BASIC18.7■□□□□ 0.58
LIG3P49916 AZIN1-AS1-214ENST00000522850 473 ntTSL 3 BASIC18.7■□□□□ 0.58
LIG3P49916 SMPD1-203ENST00000527275 2188 ntAPPRIS P3 TSL 2 BASIC18.7■□□□□ 0.58
LIG3P49916 TAF1C-222ENST00000570117 2349 ntAPPRIS ALT2 TSL 2 BASIC18.7■□□□□ 0.58
LIG3P49916 AC087388.1-201ENST00000571370 1112 ntBASIC18.7■□□□□ 0.58
LIG3P49916 AC027796.4-201ENST00000575741 874 ntTSL 5 BASIC18.7■□□□□ 0.58
LIG3P49916 C16orf74-207ENST00000602914 761 ntAPPRIS ALT2 TSL 2 BASIC18.7■□□□□ 0.58
LIG3P49916 ABO-203ENST00000611156 1577 ntAPPRIS ALT2 TSL 5 BASIC18.7■□□□□ 0.58
Retrieved 100 of 98,524 protein–RNA pairs in 29 ms