Protein–RNA interactions for Protein: P49639

HOXA1, Homeobox protein Hox-A1, humanhuman

Predicted RBP Predictions only

Length 335 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HOXA1P49639 SMPD3-211ENST00000568373 2073 ntTSL 1 (best) BASIC14.81□□□□□ -0.04
HOXA1P49639 ZNF302-202ENST00000446502 2635 ntAPPRIS ALT2 TSL 2 BASIC14.81□□□□□ -0.04
HOXA1P49639 PSMD8-207ENST00000592035 1581 ntTSL 1 (best) BASIC14.81□□□□□ -0.04
HOXA1P49639 AC099063.4-201ENST00000641099 1602 ntBASIC14.81□□□□□ -0.04
HOXA1P49639 RASAL3-201ENST00000343625 3293 ntAPPRIS P2 TSL 2 BASIC14.81□□□□□ -0.04
HOXA1P49639 RALGDS-205ENST00000393160 3801 ntAPPRIS ALT2 TSL 1 (best) BASIC14.81□□□□□ -0.04
HOXA1P49639 SLC45A1-202ENST00000471889 2784 ntTSL 5 BASIC14.81□□□□□ -0.04
HOXA1P49639 TICAM1-202ENST00000621756 1650 ntTSL 5 BASIC14.81□□□□□ -0.04
HOXA1P49639 PDPK2P-201ENST00000382326 2387 ntTSL 1 (best) BASIC14.81□□□□□ -0.04
HOXA1P49639 CCDC120-202ENST00000496529 2415 ntAPPRIS P3 TSL 2 BASIC14.81□□□□□ -0.04
HOXA1P49639 MAP4K3-202ENST00000341681 4271 ntTSL 1 (best) BASIC14.81□□□□□ -0.04
HOXA1P49639 SPRYD7-202ENST00000378195 3086 ntTSL 2 BASIC14.81□□□□□ -0.04
HOXA1P49639 ISG20-202ENST00000379224 540 ntTSL 3 BASIC14.81□□□□□ -0.04
HOXA1P49639 TMEM9-209ENST00000485839 938 ntAPPRIS P3 TSL 2 BASIC14.81□□□□□ -0.04
HOXA1P49639 RPS23-206ENST00000510210 1058 ntTSL 2 BASIC14.81□□□□□ -0.04
HOXA1P49639 AC093752.1-201ENST00000511950 605 ntTSL 4 BASIC14.81□□□□□ -0.04
HOXA1P49639 FADS3-204ENST00000525588 1254 ntTSL 5 BASIC14.81□□□□□ -0.04
HOXA1P49639 CKBP1-201ENST00000565489 1086 ntBASIC14.81□□□□□ -0.04
HOXA1P49639 AC026271.3-201ENST00000571884 352 ntBASIC14.81□□□□□ -0.04
HOXA1P49639 AC004771.5-201ENST00000575985 542 ntTSL 4 BASIC14.81□□□□□ -0.04
HOXA1P49639 SMAD7-207ENST00000589634 1278 ntAPPRIS ALT1 TSL 4 BASIC14.81□□□□□ -0.04
HOXA1P49639 AL353708.3-201ENST00000610272 989 ntBASIC14.81□□□□□ -0.04
HOXA1P49639 CR392000.1-201ENST00000624770 1228 ntBASIC14.81□□□□□ -0.04
HOXA1P49639 AL031985.4-201ENST00000642138 673 ntBASIC14.81□□□□□ -0.04
HOXA1P49639 SLC2A8-202ENST00000373360 1937 ntTSL 1 (best) BASIC14.81□□□□□ -0.04
HOXA1P49639 SMN1-209ENST00000514951 1308 ntTSL 2 BASIC14.81□□□□□ -0.04
HOXA1P49639 FBXO21-208ENST00000622495 6040 ntAPPRIS ALT1 TSL 1 (best) BASIC14.81□□□□□ -0.04
HOXA1P49639 ARHGAP4-204ENST00000393721 2721 ntTSL 5 BASIC14.81□□□□□ -0.04
HOXA1P49639 RUVBL1-202ENST00000464873 2126 ntTSL 2 BASIC14.81□□□□□ -0.04
HOXA1P49639 IFNL4-203ENST00000634680 1421 ntAPPRIS ALT2 TSL 1 (best) BASIC14.81□□□□□ -0.04
HOXA1P49639 DDX42-208ENST00000578681 4337 ntAPPRIS P1 TSL 1 (best) BASIC14.81□□□□□ -0.04
HOXA1P49639 SUZ12-201ENST00000322652 4491 ntAPPRIS P1 TSL 1 (best) BASIC14.81□□□□□ -0.04
HOXA1P49639 DBN1-201ENST00000292385 3072 ntAPPRIS P4 TSL 1 (best) BASIC14.81□□□□□ -0.04
HOXA1P49639 NDUFV1-201ENST00000322776 1596 ntAPPRIS P3 TSL 1 (best) BASIC14.81□□□□□ -0.04
HOXA1P49639 ADGRA1-AS1-201ENST00000366099 3236 ntBASIC14.81□□□□□ -0.04
HOXA1P49639 NAIF1-201ENST00000373078 3399 ntAPPRIS P1 TSL 1 (best) BASIC14.81□□□□□ -0.04
HOXA1P49639 IFT140-203ENST00000426508 5270 ntAPPRIS P1 TSL 5 BASIC14.8□□□□□ -0.04
HOXA1P49639 LINC02199-201ENST00000506655 2702 ntBASIC14.8□□□□□ -0.04
HOXA1P49639 CHTOP-207ENST00000614256 1840 ntTSL 3 BASIC14.8□□□□□ -0.04
HOXA1P49639 CLEC18C-201ENST00000314151 1934 ntAPPRIS P2 TSL 1 (best) BASIC14.8□□□□□ -0.04
HOXA1P49639 CLEC18A-208ENST00000568461 1934 ntAPPRIS P2 TSL 1 (best) BASIC14.8□□□□□ -0.04
HOXA1P49639 RCAN3-202ENST00000374395 6802 ntAPPRIS P1 TSL 1 (best) BASIC14.8□□□□□ -0.04
HOXA1P49639 SUFU-202ENST00000369902 5001 ntAPPRIS P1 TSL 1 (best) BASIC14.8□□□□□ -0.04
HOXA1P49639 MST1R-214ENST00000613534 2025 ntTSL 1 (best) BASIC14.8□□□□□ -0.04
HOXA1P49639 EML3-202ENST00000394773 3256 ntAPPRIS P2 TSL 1 (best) BASIC14.8□□□□□ -0.04
HOXA1P49639 CMTM3-202ENST00000424011 2330 ntAPPRIS P1 TSL 2 BASIC14.8□□□□□ -0.04
HOXA1P49639 LEMD3-201ENST00000308330 4764 ntAPPRIS P1 TSL 1 (best) BASIC14.8□□□□□ -0.04
HOXA1P49639 PMAIP1-201ENST00000269518 1262 ntTSL 1 (best) BASIC14.8□□□□□ -0.04
HOXA1P49639 TMEM223-201ENST00000307366 1288 ntAPPRIS P1 TSL 1 (best) BASIC14.8□□□□□ -0.04
HOXA1P49639 CMTM8-201ENST00000307526 1174 ntAPPRIS P1 TSL 1 (best) BASIC14.8□□□□□ -0.04
HOXA1P49639 NDUFA12-201ENST00000327772 635 ntAPPRIS P1 TSL 1 (best) BASIC14.8□□□□□ -0.04
HOXA1P49639 SIVA1-201ENST00000329967 802 ntAPPRIS P2 TSL 1 (best) BASIC14.8□□□□□ -0.04
HOXA1P49639 C15orf48-201ENST00000344300 875 ntAPPRIS P1 TSL 1 (best) BASIC14.8□□□□□ -0.04
HOXA1P49639 PSMG1-202ENST00000380900 907 ntTSL 1 (best) BASIC14.8□□□□□ -0.04
HOXA1P49639 NAA60-204ENST00000421765 1045 ntTSL 2 BASIC14.8□□□□□ -0.04
HOXA1P49639 A3GALT2-201ENST00000442999 1023 ntAPPRIS P1 TSL 5 BASIC14.8□□□□□ -0.04
HOXA1P49639 AP000282.1-201ENST00000454622 682 ntTSL 2 BASIC14.8□□□□□ -0.04
HOXA1P49639 CHAC1-203ENST00000487220 853 ntTSL 3 BASIC14.8□□□□□ -0.04
HOXA1P49639 TMEM191B-201ENST00000612978 1220 ntAPPRIS P2 TSL 5 BASIC14.8□□□□□ -0.04
HOXA1P49639 ADORA1-208ENST00000618295 862 ntTSL 1 (best) BASIC14.8□□□□□ -0.04
HOXA1P49639 MAPK3-212ENST00000484663 2567 ntTSL 1 (best) BASIC14.8□□□□□ -0.04
HOXA1P49639 ASCC2-223ENST00000542393 2594 ntTSL 2 BASIC14.8□□□□□ -0.04
HOXA1P49639 CLUH-202ENST00000570628 5244 ntAPPRIS P2 TSL 2 BASIC14.8□□□□□ -0.04
HOXA1P49639 COQ7-201ENST00000321998 2657 ntAPPRIS P3 TSL 1 (best) BASIC14.8□□□□□ -0.04
HOXA1P49639 PRSS50-202ENST00000315170 1372 ntAPPRIS P1 TSL 1 (best) BASIC14.8□□□□□ -0.04
HOXA1P49639 SYT7-209ENST00000542836 1362 ntTSL 5 BASIC14.8□□□□□ -0.04
HOXA1P49639 RNASET2-214ENST00000620173 1391 ntTSL 5 BASIC14.8□□□□□ -0.04
HOXA1P49639 TMEM25-203ENST00000354284 1456 ntTSL 2 BASIC14.8□□□□□ -0.04
HOXA1P49639 EEF1AKMT2-201ENST00000368836 1462 ntAPPRIS P1 TSL 1 (best) BASIC14.8□□□□□ -0.04
HOXA1P49639 FGFR2-215ENST00000457416 3061 ntAPPRIS P3 TSL 1 (best) BASIC14.8□□□□□ -0.04
HOXA1P49639 MYO19-225ENST00000621344 1640 ntTSL 2 BASIC14.8□□□□□ -0.04
HOXA1P49639 SH3BP4-201ENST00000344528 5044 ntAPPRIS P1 TSL 1 (best) BASIC14.8□□□□□ -0.04
HOXA1P49639 GPS1-201ENST00000306823 1842 ntAPPRIS P3 TSL 1 (best) BASIC14.8□□□□□ -0.04
HOXA1P49639 POR-209ENST00000439269 1858 ntTSL 2 BASIC14.8□□□□□ -0.04
HOXA1P49639 STX11-201ENST00000367568 1926 ntAPPRIS P1 TSL 1 (best) BASIC14.8□□□□□ -0.04
HOXA1P49639 CYP4F2-201ENST00000011989 2067 ntAPPRIS ALT1 TSL 1 (best) BASIC14.8□□□□□ -0.04
HOXA1P49639 ABTB1-206ENST00000468137 2065 ntTSL 1 (best) BASIC14.8□□□□□ -0.04
HOXA1P49639 FRMD6-AS1-201ENST00000617151 2229 ntBASIC14.8□□□□□ -0.04
HOXA1P49639 MRTO4-201ENST00000330263 2315 ntAPPRIS P1 TSL 1 (best) BASIC14.8□□□□□ -0.04
HOXA1P49639 DNAAF1-201ENST00000378553 2379 ntAPPRIS P1 TSL 1 (best) BASIC14.8□□□□□ -0.04
HOXA1P49639 HIPK4-201ENST00000291823 2452 ntAPPRIS P1 TSL 1 (best) BASIC14.8□□□□□ -0.04
HOXA1P49639 PIAS4-201ENST00000262971 3159 ntAPPRIS P1 TSL 1 (best) BASIC14.79□□□□□ -0.04
HOXA1P49639 TDRD6-201ENST00000316081 6817 ntAPPRIS P3 TSL 1 (best) BASIC14.79□□□□□ -0.04
HOXA1P49639 CASK-203ENST00000378163 4411 ntAPPRIS ALT1 TSL 5 BASIC14.79□□□□□ -0.04
HOXA1P49639 BIK-201ENST00000216115 953 ntAPPRIS P1 TSL 1 (best) BASIC14.79□□□□□ -0.04
HOXA1P49639 NFATC4-201ENST00000250373 4749 ntAPPRIS P3 TSL 1 (best) BASIC14.79□□□□□ -0.04
HOXA1P49639 CLDND2-201ENST00000291715 974 ntAPPRIS P1 TSL 1 (best) BASIC14.79□□□□□ -0.04
HOXA1P49639 HEXIM2-201ENST00000307275 1528 ntAPPRIS P1 TSL 2 BASIC14.79□□□□□ -0.04
HOXA1P49639 PABPC4-201ENST00000372856 3016 ntAPPRIS P1 TSL 1 (best) BASIC14.79□□□□□ -0.04
HOXA1P49639 TTLL9-205ENST00000375938 2623 ntAPPRIS P2 TSL 2 BASIC14.79□□□□□ -0.04
HOXA1P49639 CCDC107-206ENST00000426546 1242 ntAPPRIS P3 TSL 1 (best) BASIC14.79□□□□□ -0.04
HOXA1P49639 ACOXL-205ENST00000439055 2373 ntTSL 2 BASIC14.79□□□□□ -0.04
HOXA1P49639 SLC25A29-215ENST00000556505 1540 ntTSL 2 BASIC14.79□□□□□ -0.04
HOXA1P49639 RN7SL471P-201ENST00000580476 299 ntBASIC14.79□□□□□ -0.04
HOXA1P49639 SIN3B-206ENST00000595541 2767 ntTSL 2 BASIC14.79□□□□□ -0.04
HOXA1P49639 APBB1-215ENST00000608394 2128 ntTSL 5 BASIC14.79□□□□□ -0.04
HOXA1P49639 APBB1-222ENST00000610474 2147 ntTSL 5 BASIC14.79□□□□□ -0.04
HOXA1P49639 HNF1B-207ENST00000621123 1971 ntTSL 1 (best) BASIC14.79□□□□□ -0.04
HOXA1P49639 USP27X-201ENST00000621775 2618 ntAPPRIS P1 BASIC14.79□□□□□ -0.04
HOXA1P49639 GTF2IRD2-207ENST00000625377 1910 ntTSL 5 BASIC14.79□□□□□ -0.04
Retrieved 100 of 98,524 protein–RNA pairs in 21.4 ms