Protein–RNA interactions for Protein: P48742

LHX1, LIM/homeobox protein Lhx1, humanhuman

Predictions only

Length 406 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
LHX1P48742 SLC12A9-215ENST00000540482 2269 ntTSL 2 BASIC18.81■□□□□ 0.6
LHX1P48742 PMPCAP1-201ENST00000508114 1576 ntBASIC18.81■□□□□ 0.6
LHX1P48742 PTPRJ-207ENST00000613246 7851 ntAPPRIS ALT2 TSL 5 BASIC18.81■□□□□ 0.6
LHX1P48742 SULF2-201ENST00000359930 4915 ntAPPRIS P4 TSL 1 (best) BASIC18.81■□□□□ 0.6
LHX1P48742 GRAP2-202ENST00000407075 1304 ntAPPRIS P1 TSL 1 (best) BASIC18.81■□□□□ 0.6
LHX1P48742 TMEM255B-202ENST00000375353 6100 ntAPPRIS P2 TSL 1 (best) BASIC18.81■□□□□ 0.6
LHX1P48742 C11orf68-203ENST00000530188 1528 ntAPPRIS ALT2 BASIC18.81■□□□□ 0.6
LHX1P48742 PRKAR2A-201ENST00000265563 6471 ntAPPRIS P1 TSL 1 (best) BASIC18.81■□□□□ 0.6
LHX1P48742 KLHL17-201ENST00000338591 2560 ntAPPRIS P1 TSL 1 (best) BASIC18.81■□□□□ 0.6
LHX1P48742 SYNM-204ENST00000594047 6407 ntAPPRIS ALT2 TSL 1 (best) BASIC18.81■□□□□ 0.6
LHX1P48742 LCE1F-201ENST00000334371 357 ntAPPRIS P1 BASIC18.81■□□□□ 0.6
LHX1P48742 ATPIF1-201ENST00000335514 494 ntAPPRIS P1 TSL 1 (best) BASIC18.81■□□□□ 0.6
LHX1P48742 RWDD3-202ENST00000370202 1235 ntAPPRIS P1 TSL 3 BASIC18.81■□□□□ 0.6
LHX1P48742 MRPS15-201ENST00000373116 1006 ntAPPRIS P1 TSL 1 (best) BASIC18.81■□□□□ 0.6
LHX1P48742 RPS9-203ENST00000391752 772 ntAPPRIS P1 TSL 2 BASIC18.81■□□□□ 0.6
LHX1P48742 HIST2H3DP1-201ENST00000401004 416 ntBASIC18.81■□□□□ 0.6
LHX1P48742 SLC25A6P5-201ENST00000435663 894 ntBASIC18.81■□□□□ 0.6
LHX1P48742 FAM197Y8-203ENST00000450145 560 ntBASIC18.81■□□□□ 0.6
LHX1P48742 AC009078.2-202ENST00000463353 338 ntBASIC18.81■□□□□ 0.6
LHX1P48742 BLOC1S1-204ENST00000549147 1229 ntTSL 1 (best) BASIC18.81■□□□□ 0.6
LHX1P48742 TMEM220-AS1-202ENST00000580899 561 ntTSL 4 BASIC18.81■□□□□ 0.6
LHX1P48742 FUT6-212ENST00000592563 1095 ntTSL 1 (best) BASIC18.81■□□□□ 0.6
LHX1P48742 UVSSA-207ENST00000511216 2927 ntAPPRIS P2 TSL 1 (best) BASIC18.81■□□□□ 0.6
LHX1P48742 ZNF280B-203ENST00000626650 5721 ntAPPRIS P1 TSL 2 BASIC18.81■□□□□ 0.6
LHX1P48742 WWC1-201ENST00000265293 7130 ntAPPRIS P3 TSL 1 (best) BASIC18.81■□□□□ 0.6
LHX1P48742 PC-208ENST00000529047 1607 ntTSL 3 BASIC18.81■□□□□ 0.6
LHX1P48742 RAB39A-201ENST00000320578 1830 ntAPPRIS P1 TSL 1 (best) BASIC18.81■□□□□ 0.6
LHX1P48742 AC013275.1-201ENST00000413602 2019 ntTSL 1 (best) BASIC18.81■□□□□ 0.6
LHX1P48742 FOXD4L6-201ENST00000622588 2034 ntAPPRIS P1 BASIC18.81■□□□□ 0.6
LHX1P48742 RNFT2-209ENST00000622220 2176 ntTSL 5 BASIC18.81■□□□□ 0.6
LHX1P48742 RAVER1-207ENST00000615032 1952 ntAPPRIS ALT2 TSL 5 BASIC18.81■□□□□ 0.6
LHX1P48742 TOM1L2-203ENST00000395739 1766 ntTSL 2 BASIC18.81■□□□□ 0.6
LHX1P48742 THNSL2-203ENST00000377254 1560 ntTSL 2 BASIC18.81■□□□□ 0.6
LHX1P48742 GOLPH3-201ENST00000265070 2721 ntAPPRIS P1 TSL 1 (best) BASIC18.8■□□□□ 0.6
LHX1P48742 TCAP-201ENST00000309889 2123 ntAPPRIS P1 TSL 1 (best) BASIC18.8■□□□□ 0.6
LHX1P48742 RRN3-205ENST00000563559 2128 ntTSL 5 BASIC18.8■□□□□ 0.6
LHX1P48742 SHANK3-203ENST00000445220 5175 ntAPPRIS ALT2 TSL 5 BASIC18.8■□□□□ 0.6
LHX1P48742 NOMO3-202ENST00000399336 4356 ntAPPRIS P2 TSL 1 (best) BASIC18.8■□□□□ 0.6
LHX1P48742 HOTTIP-202ENST00000472494 2285 ntTSL 2 BASIC18.8■□□□□ 0.6
LHX1P48742 GPANK1-202ENST00000375895 1800 ntAPPRIS P1 TSL 5 BASIC18.8■□□□□ 0.6
LHX1P48742 PCCB-207ENST00000466072 1844 ntAPPRIS ALT2 TSL 3 BASIC18.8■□□□□ 0.6
LHX1P48742 TMEM237-213ENST00000621467 1824 ntAPPRIS ALT2 TSL 1 (best) BASIC18.8■□□□□ 0.6
LHX1P48742 AL049795.1-201ENST00000373604 642 ntTSL 3 BASIC18.8■□□□□ 0.6
LHX1P48742 TLE1-202ENST00000376484 666 ntTSL 3 BASIC18.8■□□□□ 0.6
LHX1P48742 UBE2J2-204ENST00000400929 1057 ntTSL 3 BASIC18.8■□□□□ 0.6
LHX1P48742 GNB2-207ENST00000427895 1146 ntTSL 5 BASIC18.8■□□□□ 0.6
LHX1P48742 AQP12A-202ENST00000429564 1110 ntAPPRIS P5 TSL 5 BASIC18.8■□□□□ 0.6
LHX1P48742 MIF4GD-205ENST00000578305 569 ntTSL 5 BASIC18.8■□□□□ 0.6
LHX1P48742 AC068594.1-202ENST00000581657 749 ntTSL 3 BASIC18.8■□□□□ 0.6
LHX1P48742 AC008105.3-202ENST00000585471 1077 ntTSL 1 (best) BASIC18.8■□□□□ 0.6
LHX1P48742 AC012366.1-201ENST00000615411 473 ntTSL 5 BASIC18.8■□□□□ 0.6
LHX1P48742 TP73-AS1-207ENST00000624167 988 ntBASIC18.8■□□□□ 0.6
LHX1P48742 SIRPAP1-201ENST00000448467 1770 ntBASIC18.8■□□□□ 0.6
LHX1P48742 NFATC1-206ENST00000542384 2142 ntAPPRIS ALT2 TSL 1 (best) BASIC18.8■□□□□ 0.6
LHX1P48742 AL049757.1-201ENST00000616842 1596 ntBASIC18.8■□□□□ 0.6
LHX1P48742 AL356309.3-201ENST00000624132 1934 ntBASIC18.8■□□□□ 0.6
LHX1P48742 ETFBKMT-202ENST00000395763 2055 ntAPPRIS P1 TSL 1 (best) BASIC18.8■□□□□ 0.6
LHX1P48742 MECP2-205ENST00000453960 1729 ntTSL 1 (best) BASIC18.8■□□□□ 0.6
LHX1P48742 BPGM-203ENST00000418040 1870 ntAPPRIS P1 TSL 5 BASIC18.8■□□□□ 0.6
LHX1P48742 ENTPD6-209ENST00000433259 2654 ntTSL 5 BASIC18.79■□□□□ 0.6
LHX1P48742 RNF32-201ENST00000311822 1842 ntTSL 1 (best) BASIC18.79■□□□□ 0.6
LHX1P48742 L1CAM-205ENST00000370060 5113 ntAPPRIS P4 TSL 5 BASIC18.79■□□□□ 0.6
LHX1P48742 AL353593.2-201ENST00000602529 1483 ntBASIC18.79■□□□□ 0.6
LHX1P48742 TLX2-204ENST00000621092 1452 ntTSL 1 (best) BASIC18.79■□□□□ 0.6
LHX1P48742 CA9-201ENST00000378357 1618 ntAPPRIS P1 TSL 1 (best) BASIC18.79■□□□□ 0.6
LHX1P48742 ANXA6-201ENST00000354546 2593 ntAPPRIS P1 TSL 1 (best) BASIC18.79■□□□□ 0.6
LHX1P48742 NPEPL1-204ENST00000525967 1917 ntTSL 1 (best) BASIC18.79■□□□□ 0.6
LHX1P48742 MAP3K6-207ENST00000493901 4309 ntAPPRIS P1 TSL 5 BASIC18.79■□□□□ 0.6
LHX1P48742 ZNF668-208ENST00000538906 2865 ntAPPRIS P1 TSL 2 BASIC18.79■□□□□ 0.6
LHX1P48742 NANS-201ENST00000210444 1170 ntAPPRIS P1 TSL 1 (best) BASIC18.79■□□□□ 0.6
LHX1P48742 PHPT1-202ENST00000371661 985 ntTSL 5 BASIC18.79■□□□□ 0.6
LHX1P48742 PRSS42-201ENST00000429665 882 ntAPPRIS P1 TSL 1 (best) BASIC18.79■□□□□ 0.6
LHX1P48742 PPIE-208ENST00000470213 927 ntTSL 3 BASIC18.79■□□□□ 0.6
LHX1P48742 TTLL12-204ENST00000494035 888 ntTSL 2 BASIC18.79■□□□□ 0.6
LHX1P48742 TRPC2-202ENST00000526541 1189 ntTSL 1 (best) BASIC18.79■□□□□ 0.6
LHX1P48742 GSTZ1-207ENST00000553586 979 ntAPPRIS ALT1 TSL 5 BASIC18.79■□□□□ 0.6
LHX1P48742 MCRIP1-211ENST00000576679 751 ntTSL 2 BASIC18.79■□□□□ 0.6
LHX1P48742 LINC01607-201ENST00000607172 621 ntTSL 2 BASIC18.79■□□□□ 0.6
LHX1P48742 AL139288.1-201ENST00000623748 933 ntBASIC18.79■□□□□ 0.6
LHX1P48742 SPOPL-201ENST00000280098 6025 ntAPPRIS P1 TSL 1 (best) BASIC18.79■□□□□ 0.6
LHX1P48742 CXorf40B-205ENST00000462691 1440 ntAPPRIS ALT1 TSL 3 BASIC18.79■□□□□ 0.6
LHX1P48742 MSL1-202ENST00000398532 4707 ntTSL 1 (best) BASIC18.79■□□□□ 0.6
LHX1P48742 ISY1-201ENST00000273541 1704 ntTSL 1 (best) BASIC18.79■□□□□ 0.6
LHX1P48742 LTBP3-202ENST00000322147 4046 ntAPPRIS P3 TSL 1 (best) BASIC18.79■□□□□ 0.6
LHX1P48742 NTRK1-201ENST00000358660 2492 ntAPPRIS ALT2 TSL 2 BASIC18.79■□□□□ 0.6
LHX1P48742 LUC7L2-210ENST00000619796 2783 ntTSL 1 (best) BASIC18.79■□□□□ 0.6
LHX1P48742 GLCCI1-201ENST00000223145 4743 ntAPPRIS P2 TSL 1 (best) BASIC18.79■□□□□ 0.6
LHX1P48742 PDLIM3-201ENST00000284767 2589 ntTSL 5 BASIC18.79■□□□□ 0.6
LHX1P48742 SCYL1-203ENST00000420247 2583 ntTSL 1 (best) BASIC18.79■□□□□ 0.6
LHX1P48742 FAM219B-204ENST00000563119 2721 ntAPPRIS P1 TSL 1 (best) BASIC18.79■□□□□ 0.6
LHX1P48742 ANKRD9-201ENST00000286918 6727 ntAPPRIS P1 TSL 1 (best) BASIC18.78■□□□□ 0.6
LHX1P48742 SLC44A3-201ENST00000271227 2388 ntAPPRIS P1 TSL 1 (best) BASIC18.78■□□□□ 0.6
LHX1P48742 DTX3-204ENST00000548804 2067 ntAPPRIS P3 TSL 5 BASIC18.78■□□□□ 0.6
LHX1P48742 LYRM9-203ENST00000460380 2196 ntTSL 2 BASIC18.78■□□□□ 0.6
LHX1P48742 AC010198.1-201ENST00000500076 1552 ntTSL 1 (best) BASIC18.78■□□□□ 0.6
LHX1P48742 NABP2-201ENST00000267023 1417 ntAPPRIS P1 TSL 1 (best) BASIC18.78■□□□□ 0.6
LHX1P48742 MOV10L1-203ENST00000395852 1422 ntTSL 2 BASIC18.78■□□□□ 0.6
LHX1P48742 FAM206A-201ENST00000322940 2134 ntAPPRIS P1 TSL 1 (best) BASIC18.78■□□□□ 0.6
LHX1P48742 BAIAP2L2-202ENST00000381669 2146 ntAPPRIS P2 TSL 1 (best) BASIC18.78■□□□□ 0.6
LHX1P48742 UPK3A-202ENST00000396082 627 ntAPPRIS ALT2 TSL 1 (best) BASIC18.78■□□□□ 0.6
Retrieved 100 of 98,524 protein–RNA pairs in 43.6 ms