Protein–RNA interactions for Protein: P48380

RFX3, Transcription factor RFX3, humanhuman

Predictions only

Length 749 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
RFX3P48380 QPRT-202ENST00000395384 2343 ntAPPRIS P1 TSL 1 (best) BASIC16.75■□□□□ 0.27
RFX3P48380 FAM53A-207ENST00000489363 2776 ntTSL 2 BASIC16.75■□□□□ 0.27
RFX3P48380 COL18A1-203ENST00000359759 6586 ntAPPRIS ALT2 TSL 5 BASIC16.75■□□□□ 0.27
RFX3P48380 ZNF697-201ENST00000421812 5041 ntAPPRIS P1 TSL 3 BASIC16.75■□□□□ 0.27
RFX3P48380 ZNF496-201ENST00000294753 5336 ntAPPRIS P1 TSL 1 (best) BASIC16.75■□□□□ 0.27
RFX3P48380 LHFPL6-201ENST00000379589 2110 ntAPPRIS P1 TSL 1 (best) BASIC16.75■□□□□ 0.27
RFX3P48380 PLD3-207ENST00000409735 2140 ntAPPRIS P1 TSL 1 (best) BASIC16.75■□□□□ 0.27
RFX3P48380 CLPB-212ENST00000543042 2133 ntTSL 2 BASIC16.75■□□□□ 0.27
RFX3P48380 STUM-201ENST00000366788 7705 ntAPPRIS P2 TSL 5 BASIC16.75■□□□□ 0.27
RFX3P48380 POLI-207ENST00000579434 2705 ntTSL 1 (best) BASIC16.75■□□□□ 0.27
RFX3P48380 EGLN1-201ENST00000366641 7097 ntAPPRIS P1 TSL 1 (best) BASIC16.75■□□□□ 0.27
RFX3P48380 WDR59-202ENST00000536050 1752 ntTSL 2 BASIC16.74■□□□□ 0.27
RFX3P48380 MRPL10-203ENST00000414011 1622 ntTSL 3 BASIC16.74■□□□□ 0.27
RFX3P48380 ZZZ3-201ENST00000370798 2468 ntTSL 1 (best) BASIC16.74■□□□□ 0.27
RFX3P48380 CCM2-207ENST00000475551 2471 ntAPPRIS ALT2 TSL 2 BASIC16.74■□□□□ 0.27
RFX3P48380 AC067852.2-201ENST00000590513 2313 ntBASIC16.74■□□□□ 0.27
RFX3P48380 SEMA5B-202ENST00000357599 4792 ntAPPRIS P3 TSL 1 (best) BASIC16.74■□□□□ 0.27
RFX3P48380 PAK4-209ENST00000599470 1715 ntTSL 1 (best) BASIC16.74■□□□□ 0.27
RFX3P48380 ELP5-204ENST00000396628 1423 ntAPPRIS P2 TSL 1 (best) BASIC16.74■□□□□ 0.27
RFX3P48380 DGUOK-201ENST00000264093 1144 ntAPPRIS P1 TSL 1 (best) BASIC16.74■□□□□ 0.27
RFX3P48380 PYDC1-201ENST00000302964 813 ntAPPRIS P1 TSL 1 (best) BASIC16.74■□□□□ 0.27
RFX3P48380 HOPX-201ENST00000317745 1129 ntAPPRIS P1 TSL 1 (best) BASIC16.74■□□□□ 0.27
RFX3P48380 GSTO2-201ENST00000338595 1179 ntAPPRIS P1 TSL 1 (best) BASIC16.74■□□□□ 0.27
RFX3P48380 DGUOK-202ENST00000348222 880 ntTSL 2 BASIC16.74■□□□□ 0.27
RFX3P48380 SUV39H2-204ENST00000378325 1292 ntTSL 1 (best) BASIC16.74■□□□□ 0.27
RFX3P48380 AC093901.1-201ENST00000414886 778 ntTSL 5 BASIC16.74■□□□□ 0.27
RFX3P48380 AC004540.1-201ENST00000439120 891 ntTSL 2 BASIC16.74■□□□□ 0.27
RFX3P48380 ELOVL2-AS1-202ENST00000456616 903 ntTSL 1 (best) BASIC16.74■□□□□ 0.27
RFX3P48380 AP003733.1-201ENST00000491725 852 ntBASIC16.74■□□□□ 0.27
RFX3P48380 DUX4-205ENST00000570263 768 ntAPPRIS ALT2 TSL 1 (best) BASIC16.74■□□□□ 0.27
RFX3P48380 RPARP-AS1-206ENST00000596366 631 ntTSL 3 BASIC16.74■□□□□ 0.27
RFX3P48380 DGUOK-208ENST00000629438 1029 ntTSL 1 (best) BASIC16.74■□□□□ 0.27
RFX3P48380 AP5S1-201ENST00000246041 1960 ntAPPRIS P1 TSL 4 BASIC16.74■□□□□ 0.27
RFX3P48380 ZIC3-202ENST00000370606 1968 ntTSL 5 BASIC16.74■□□□□ 0.27
RFX3P48380 TOP1MT-218ENST00000523676 1982 ntTSL 5 BASIC16.74■□□□□ 0.27
RFX3P48380 PHF1-201ENST00000374512 2224 ntTSL 1 (best) BASIC16.74■□□□□ 0.27
RFX3P48380 MCOLN1-201ENST00000264079 2082 ntAPPRIS P1 TSL 1 (best) BASIC16.74■□□□□ 0.27
RFX3P48380 RNF113B-201ENST00000267291 1376 ntAPPRIS P1 TSL 1 (best) BASIC16.74■□□□□ 0.27
RFX3P48380 FIBIN-201ENST00000318627 1938 ntAPPRIS P1 BASIC16.74■□□□□ 0.27
RFX3P48380 TMEM59L-201ENST00000262817 1613 ntAPPRIS P1 TSL 1 (best) BASIC16.74■□□□□ 0.27
RFX3P48380 ARSE-201ENST00000381134 1853 ntAPPRIS P1 TSL 1 (best) BASIC16.73■□□□□ 0.27
RFX3P48380 CXXC1-202ENST00000412036 2280 ntAPPRIS ALT1 TSL 1 (best) BASIC16.73■□□□□ 0.27
RFX3P48380 ERI1-203ENST00000519292 2107 ntAPPRIS P1 TSL 2 BASIC16.73■□□□□ 0.27
RFX3P48380 TRIM36-202ENST00000379617 1322 ntTSL 2 BASIC16.73■□□□□ 0.27
RFX3P48380 NOX4-201ENST00000263317 2388 ntAPPRIS P1 TSL 1 (best) BASIC16.73■□□□□ 0.27
RFX3P48380 PPAN-P2RY11-201ENST00000393796 2385 ntAPPRIS P1 TSL 1 (best) BASIC16.73■□□□□ 0.27
RFX3P48380 GOLGA6L2-204ENST00000567107 3030 ntAPPRIS P2 TSL 5 BASIC16.73■□□□□ 0.27
RFX3P48380 COPS7A-210ENST00000539735 1832 ntAPPRIS P1 TSL 5 BASIC16.73■□□□□ 0.27
RFX3P48380 TBXA2R-204ENST00000589966 1814 ntTSL 1 (best) BASIC16.73■□□□□ 0.27
RFX3P48380 TNKS1BP1-207ENST00000532437 5952 ntAPPRIS P2 TSL 1 (best) BASIC16.73■□□□□ 0.27
RFX3P48380 FERMT2-204ENST00000399304 2082 ntTSL 1 (best) BASIC16.73■□□□□ 0.27
RFX3P48380 RPL3-201ENST00000216146 1442 ntAPPRIS P1 TSL 1 (best) BASIC16.73■□□□□ 0.27
RFX3P48380 STAC3-201ENST00000332782 1656 ntAPPRIS P1 TSL 2 BASIC16.73■□□□□ 0.27
RFX3P48380 CALHM3-201ENST00000369783 1652 ntAPPRIS P1 TSL 1 (best) BASIC16.73■□□□□ 0.27
RFX3P48380 AC132938.6-201ENST00000623828 1655 ntBASIC16.73■□□□□ 0.27
RFX3P48380 CCDC157-203ENST00000405659 3052 ntAPPRIS P3 TSL 1 (best) BASIC16.73■□□□□ 0.27
RFX3P48380 SLX1B-SULT1A4-201ENST00000344620 2424 ntTSL 2 BASIC16.73■□□□□ 0.27
RFX3P48380 HLA-F-217ENST00000334668 1283 ntAPPRIS ALT2 BASIC16.73■□□□□ 0.27
RFX3P48380 BIRC7-203ENST00000395306 593 ntTSL 2 BASIC16.73■□□□□ 0.27
RFX3P48380 UBE2J2-205ENST00000400930 1021 ntTSL 5 BASIC16.73■□□□□ 0.27
RFX3P48380 AL035541.1-201ENST00000424850 823 ntTSL 2 BASIC16.73■□□□□ 0.27
RFX3P48380 HLA-F-220ENST00000434407 884 ntBASIC16.73■□□□□ 0.27
RFX3P48380 AC026471.3-201ENST00000565137 578 ntTSL 2 BASIC16.73■□□□□ 0.27
RFX3P48380 LINC00092-202ENST00000580908 580 ntTSL 2 BASIC16.73■□□□□ 0.27
RFX3P48380 H3F3B-206ENST00000587560 551 ntAPPRIS P1 TSL 2 BASIC16.73■□□□□ 0.27
RFX3P48380 NTF6B-201ENST00000591913 560 ntBASIC16.73■□□□□ 0.27
RFX3P48380 COLCA2-205ENST00000614153 1264 ntTSL 3 BASIC16.73■□□□□ 0.27
RFX3P48380 LITAF-220ENST00000620789 692 ntTSL 5 BASIC16.73■□□□□ 0.27
RFX3P48380 DFFB-212ENST00000625756 649 ntTSL 5 BASIC16.73■□□□□ 0.27
RFX3P48380 FLJ13224-201ENST00000313737 1514 ntBASIC16.73■□□□□ 0.27
RFX3P48380 APBB1IP-201ENST00000356785 1513 ntTSL 1 (best) BASIC16.73■□□□□ 0.27
RFX3P48380 SDC1-203ENST00000403076 1523 ntTSL 1 (best) BASIC16.73■□□□□ 0.27
RFX3P48380 HOTTIP-202ENST00000472494 2285 ntTSL 2 BASIC16.73■□□□□ 0.27
RFX3P48380 CLIP4-201ENST00000320081 4293 ntAPPRIS P1 TSL 1 (best) BASIC16.73■□□□□ 0.27
RFX3P48380 CD14-201ENST00000302014 1886 ntAPPRIS P1 TSL 1 (best) BASIC16.73■□□□□ 0.27
RFX3P48380 ACVRL1-202ENST00000419526 1356 ntTSL 2 BASIC16.73■□□□□ 0.27
RFX3P48380 TAF15-211ENST00000604841 2140 ntAPPRIS ALT2 TSL 1 (best) BASIC16.73■□□□□ 0.27
RFX3P48380 TOR3A-203ENST00000367627 2724 ntAPPRIS P1 TSL 1 (best) BASIC16.73■□□□□ 0.27
RFX3P48380 MARVELD3-202ENST00000299952 2214 ntAPPRIS ALT2 TSL 2 BASIC16.73■□□□□ 0.27
RFX3P48380 ZNF416-201ENST00000196489 2561 ntAPPRIS P1 TSL 1 (best) BASIC16.73■□□□□ 0.27
RFX3P48380 CHRD-202ENST00000348986 3155 ntAPPRIS ALT2 TSL 5 BASIC16.73■□□□□ 0.27
RFX3P48380 SRRM2-AS1-203ENST00000571305 1344 ntTSL 2 BASIC16.72■□□□□ 0.27
RFX3P48380 AC090206.1-201ENST00000615734 1678 ntTSL 5 BASIC16.72■□□□□ 0.27
RFX3P48380 SQOR-201ENST00000260324 2003 ntAPPRIS P1 TSL 1 (best) BASIC16.72■□□□□ 0.27
RFX3P48380 PDE4D-204ENST00000358923 2969 ntTSL 1 (best) BASIC16.72■□□□□ 0.27
RFX3P48380 LIFR-202ENST00000453190 4253 ntAPPRIS P1 TSL 2 BASIC16.72■□□□□ 0.27
RFX3P48380 CD209-210ENST00000601951 1439 ntAPPRIS ALT2 TSL 1 (best) BASIC16.72■□□□□ 0.27
RFX3P48380 CACNA1G-201ENST00000352832 7848 ntAPPRIS ALT2 TSL 1 (best) BASIC16.72■□□□□ 0.27
RFX3P48380 TMTC2-201ENST00000321196 5681 ntAPPRIS P1 TSL 1 (best) BASIC16.72■□□□□ 0.27
RFX3P48380 NFATC1-206ENST00000542384 2142 ntAPPRIS ALT2 TSL 1 (best) BASIC16.72■□□□□ 0.27
RFX3P48380 WNT8A-204ENST00000506684 1543 ntTSL 1 (best) BASIC16.72■□□□□ 0.27
RFX3P48380 GFY-201ENST00000576655 1876 ntAPPRIS P1 TSL 5 BASIC16.72■□□□□ 0.27
RFX3P48380 STX3-201ENST00000337979 3299 ntAPPRIS P1 TSL 1 (best) BASIC16.72■□□□□ 0.27
RFX3P48380 SCT-201ENST00000176195 366 ntAPPRIS P1 TSL 1 (best) BASIC16.72■□□□□ 0.27
RFX3P48380 ZNF414-201ENST00000255616 1178 ntTSL 1 (best) BASIC16.72■□□□□ 0.27
RFX3P48380 NUDT8-201ENST00000301490 809 ntAPPRIS P3 TSL 1 (best) BASIC16.72■□□□□ 0.27
RFX3P48380 AGTRAP-201ENST00000314340 1107 ntAPPRIS P3 TSL 1 (best) BASIC16.72■□□□□ 0.27
RFX3P48380 MRPL24-202ENST00000368211 883 ntAPPRIS P1 TSL 1 (best) BASIC16.72■□□□□ 0.27
RFX3P48380 TNFRSF10C-202ENST00000397703 1242 ntTSL 2 BASIC16.72■□□□□ 0.27
RFX3P48380 MEAF6-205ENST00000448519 666 ntAPPRIS ALT1 TSL 1 (best) BASIC16.72■□□□□ 0.27
Retrieved 100 of 98,524 protein–RNA pairs in 27.4 ms