Protein–RNA interactions for Protein: P28068

HLA-DMB, HLA class II histocompatibility antigen, DM beta chain, humanhuman

Predictions only

Length 263 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HLA-DMBP28068 AC015961.2-201ENST00000589281 701 ntTSL 3 BASIC13.59□□□□□ -0.23
HLA-DMBP28068 SYNGR4-204ENST00000601610 859 ntTSL 3 BASIC13.59□□□□□ -0.23
HLA-DMBP28068 SMIM8-209ENST00000608868 815 ntAPPRIS P1 TSL 5 BASIC13.59□□□□□ -0.23
HLA-DMBP28068 OBP2B-205ENST00000618116 961 ntAPPRIS P1 TSL 1 (best) BASIC13.59□□□□□ -0.23
HLA-DMBP28068 SNX1-208ENST00000559844 1971 ntAPPRIS P1 TSL 1 (best) BASIC13.59□□□□□ -0.23
HLA-DMBP28068 VSIG10L2-202ENST00000638636 2304 ntAPPRIS P1 TSL 5 BASIC13.59□□□□□ -0.23
HLA-DMBP28068 LZTS3-203ENST00000360342 4055 ntTSL 1 (best) BASIC13.59□□□□□ -0.23
HLA-DMBP28068 PBK-203ENST00000522944 1499 ntTSL 2 BASIC13.59□□□□□ -0.23
HLA-DMBP28068 RABL2A-204ENST00000393167 2179 ntAPPRIS P3 TSL 1 (best) BASIC13.59□□□□□ -0.23
HLA-DMBP28068 PBX2-201ENST00000375050 3205 ntAPPRIS P1 TSL 1 (best) BASIC13.59□□□□□ -0.23
HLA-DMBP28068 AC009053.2-201ENST00000563701 2365 ntBASIC13.59□□□□□ -0.23
HLA-DMBP28068 STAC3-201ENST00000332782 1656 ntAPPRIS P1 TSL 2 BASIC13.59□□□□□ -0.23
HLA-DMBP28068 NEK2-205ENST00000540251 1318 ntTSL 1 (best) BASIC13.59□□□□□ -0.23
HLA-DMBP28068 MYH14-203ENST00000425460 6811 ntAPPRIS P3 TSL 5 BASIC13.59□□□□□ -0.23
HLA-DMBP28068 PIP5K1C-205ENST00000589578 2933 ntAPPRIS ALT2 TSL 1 (best) BASIC13.59□□□□□ -0.23
HLA-DMBP28068 LINC00602-201ENST00000629776 2065 ntBASIC13.59□□□□□ -0.23
HLA-DMBP28068 FOXO3-202ENST00000406360 7341 ntAPPRIS P1 TSL 1 (best) BASIC13.59□□□□□ -0.23
HLA-DMBP28068 PSRC1-204ENST00000369909 1742 ntAPPRIS P3 TSL 1 (best) BASIC13.59□□□□□ -0.23
HLA-DMBP28068 WWOX-203ENST00000406884 1701 ntTSL 1 (best) BASIC13.59□□□□□ -0.23
HLA-DMBP28068 SPDYE5-203ENST00000625065 1700 ntAPPRIS P2 TSL 5 BASIC13.59□□□□□ -0.23
HLA-DMBP28068 PRRT2-219ENST00000637565 1733 ntTSL 5 BASIC13.59□□□□□ -0.23
HLA-DMBP28068 UQCC3-202ENST00000531323 2288 ntAPPRIS P1 TSL 3 BASIC13.59□□□□□ -0.23
HLA-DMBP28068 HMGA1-201ENST00000311487 1920 ntAPPRIS P4 TSL 1 (best) BASIC13.58□□□□□ -0.23
HLA-DMBP28068 CREB3L1-206ENST00000621158 2687 ntAPPRIS P1 TSL 1 (best) BASIC13.58□□□□□ -0.23
HLA-DMBP28068 AP003071.5-201ENST00000641568 2695 ntAPPRIS P1 BASIC13.58□□□□□ -0.23
HLA-DMBP28068 PDIA2-202ENST00000404312 1575 ntAPPRIS ALT2 TSL 5 BASIC13.58□□□□□ -0.23
HLA-DMBP28068 AC010198.1-201ENST00000500076 1552 ntTSL 1 (best) BASIC13.58□□□□□ -0.23
HLA-DMBP28068 ARHGAP4-204ENST00000393721 2721 ntTSL 5 BASIC13.58□□□□□ -0.24
HLA-DMBP28068 TAOK2-202ENST00000308893 5169 ntAPPRIS P4 TSL 1 (best) BASIC13.58□□□□□ -0.24
HLA-DMBP28068 GCH1-204ENST00000491895 2943 ntAPPRIS P1 TSL 1 (best) BASIC13.58□□□□□ -0.24
HLA-DMBP28068 PPIF-201ENST00000225174 2190 ntAPPRIS P1 TSL 1 (best) BASIC13.58□□□□□ -0.24
HLA-DMBP28068 PRPF19-201ENST00000227524 2157 ntAPPRIS P1 TSL 1 (best) BASIC13.58□□□□□ -0.24
HLA-DMBP28068 PPM1M-202ENST00000323588 2193 ntAPPRIS P1 TSL 1 (best) BASIC13.58□□□□□ -0.24
HLA-DMBP28068 TRIM73-205ENST00000450434 1425 ntTSL 1 (best) BASIC13.58□□□□□ -0.24
HLA-DMBP28068 ACP5-201ENST00000218758 1630 ntAPPRIS P1 TSL 1 (best) BASIC13.58□□□□□ -0.24
HLA-DMBP28068 AGBL5-202ENST00000360131 3177 ntAPPRIS P3 TSL 1 (best) BASIC13.58□□□□□ -0.24
HLA-DMBP28068 TCTEX1D1-201ENST00000282670 2001 ntAPPRIS P1 TSL 1 (best) BASIC13.58□□□□□ -0.24
HLA-DMBP28068 LRCH2-201ENST00000317135 4929 ntAPPRIS P3 TSL 1 (best) BASIC13.58□□□□□ -0.24
HLA-DMBP28068 RGS14-201ENST00000408923 2415 ntAPPRIS P1 TSL 1 (best) BASIC13.58□□□□□ -0.24
HLA-DMBP28068 GLIS1-201ENST00000312233 2812 ntAPPRIS P2 TSL 2 BASIC13.58□□□□□ -0.24
HLA-DMBP28068 GLIS1-202ENST00000628545 2807 ntAPPRIS ALT2 TSL 5 BASIC13.58□□□□□ -0.24
HLA-DMBP28068 RUNX2-201ENST00000359524 5390 ntTSL 1 (best) BASIC13.58□□□□□ -0.24
HLA-DMBP28068 PITPNA-202ENST00000539476 3612 ntAPPRIS ALT1 TSL 5 BASIC13.58□□□□□ -0.24
HLA-DMBP28068 PAX3-201ENST00000258387 958 ntTSL 1 (best) BASIC13.58□□□□□ -0.24
HLA-DMBP28068 PNOC-201ENST00000301908 1200 ntAPPRIS P1 TSL 1 (best) BASIC13.58□□□□□ -0.24
HLA-DMBP28068 ARMC10P1-201ENST00000313754 855 ntBASIC13.58□□□□□ -0.24
HLA-DMBP28068 FAM212A-201ENST00000333323 1040 ntAPPRIS P1 TSL 1 (best) BASIC13.58□□□□□ -0.24
HLA-DMBP28068 CCK-201ENST00000334681 830 ntAPPRIS P1 TSL 1 (best) BASIC13.58□□□□□ -0.24
HLA-DMBP28068 ICAM1-202ENST00000423829 1296 ntTSL 2 BASIC13.58□□□□□ -0.24
HLA-DMBP28068 LY6E-214ENST00000522971 857 ntAPPRIS P2 TSL 2 BASIC13.58□□□□□ -0.24
HLA-DMBP28068 TMEM9B-AS1-201ENST00000525484 1053 ntTSL 5 BASIC13.58□□□□□ -0.24
HLA-DMBP28068 FOSL1-203ENST00000531493 1200 ntTSL 1 (best) BASIC13.58□□□□□ -0.24
HLA-DMBP28068 H3F3B-206ENST00000587560 551 ntAPPRIS P1 TSL 2 BASIC13.58□□□□□ -0.24
HLA-DMBP28068 AC020911.2-202ENST00000588945 593 ntTSL 3 BASIC13.58□□□□□ -0.24
HLA-DMBP28068 RNF165-206ENST00000590330 1049 ntTSL 2 BASIC13.58□□□□□ -0.24
HLA-DMBP28068 AC009542.2-201ENST00000637483 1189 ntTSL 5 BASIC13.58□□□□□ -0.24
HLA-DMBP28068 RNF187-203ENST00000639044 708 ntAPPRIS P2 TSL 1 (best) BASIC13.58□□□□□ -0.24
HLA-DMBP28068 SLC22A1-203ENST00000457470 1452 ntTSL 5 BASIC13.58□□□□□ -0.24
HLA-DMBP28068 KRAS-203ENST00000556131 1696 ntTSL 1 (best) BASIC13.58□□□□□ -0.24
HLA-DMBP28068 SDF4-201ENST00000263741 2079 ntAPPRIS P3 TSL 1 (best) BASIC13.58□□□□□ -0.24
HLA-DMBP28068 PILRB-208ENST00000452089 2099 ntAPPRIS P2 TSL 2 BASIC13.58□□□□□ -0.24
HLA-DMBP28068 PIP5K1A-207ENST00000441902 2297 ntTSL 2 BASIC13.58□□□□□ -0.24
HLA-DMBP28068 CERCAM-201ENST00000372838 2685 ntAPPRIS P3 TSL 1 (best) BASIC13.58□□□□□ -0.24
HLA-DMBP28068 LPAR5-202ENST00000431922 2695 ntAPPRIS P1 TSL 2 BASIC13.58□□□□□ -0.24
HLA-DMBP28068 RAPGEFL1-212ENST00000620260 3855 ntAPPRIS P1 TSL 1 (best) BASIC13.58□□□□□ -0.24
HLA-DMBP28068 SENP5-201ENST00000323460 6308 ntAPPRIS P1 TSL 1 (best) BASIC13.58□□□□□ -0.24
HLA-DMBP28068 COQ6-201ENST00000334571 2118 ntAPPRIS P1 TSL 1 (best) BASIC13.58□□□□□ -0.24
HLA-DMBP28068 BPHL-203ENST00000380379 1928 ntAPPRIS P1 TSL 1 (best) BASIC13.58□□□□□ -0.24
HLA-DMBP28068 HLA-DQB1-204ENST00000399084 1734 ntAPPRIS P1 BASIC13.58□□□□□ -0.24
HLA-DMBP28068 AP001922.1-201ENST00000499390 1504 ntTSL 1 (best) BASIC13.58□□□□□ -0.24
HLA-DMBP28068 FAM208A-209ENST00000493960 5600 ntAPPRIS P2 TSL 5 BASIC13.58□□□□□ -0.24
HLA-DMBP28068 RASA4-202ENST00000449970 2787 ntAPPRIS ALT1 TSL 2 BASIC13.58□□□□□ -0.24
HLA-DMBP28068 AP5S1-201ENST00000246041 1960 ntAPPRIS P1 TSL 4 BASIC13.58□□□□□ -0.24
HLA-DMBP28068 TMEM175-222ENST00000622959 1967 ntTSL 1 (best) BASIC13.58□□□□□ -0.24
HLA-DMBP28068 FYTTD1-205ENST00000424384 1758 ntTSL 2 BASIC13.58□□□□□ -0.24
HLA-DMBP28068 WNT9B-201ENST00000290015 1376 ntAPPRIS P1 TSL 1 (best) BASIC13.58□□□□□ -0.24
HLA-DMBP28068 MAGI1-213ENST00000483466 4791 ntAPPRIS P3 TSL 1 (best) BASIC13.58□□□□□ -0.24
HLA-DMBP28068 LOXL3-205ENST00000409986 2005 ntTSL 2 BASIC13.57□□□□□ -0.24
HLA-DMBP28068 LINC00167-201ENST00000530583 1419 ntBASIC13.57□□□□□ -0.24
HLA-DMBP28068 MACF1-233ENST00000602421 1423 ntTSL 2 BASIC13.57□□□□□ -0.24
HLA-DMBP28068 LINC01097-201ENST00000627163 2122 ntTSL 2 BASIC13.57□□□□□ -0.24
HLA-DMBP28068 NEURL1B-201ENST00000369800 6424 ntAPPRIS P1 TSL 1 (best) BASIC13.57□□□□□ -0.24
HLA-DMBP28068 RAB8A-201ENST00000300935 2827 ntAPPRIS P1 TSL 1 (best) BASIC13.57□□□□□ -0.24
HLA-DMBP28068 LMNA-208ENST00000448611 1943 ntTSL 2 BASIC13.57□□□□□ -0.24
HLA-DMBP28068 TLK2-201ENST00000326270 3512 ntTSL 1 (best) BASIC13.57□□□□□ -0.24
HLA-DMBP28068 PLEKHG4-205ENST00000450733 4480 ntAPPRIS ALT2 TSL 1 (best) BASIC13.57□□□□□ -0.24
HLA-DMBP28068 NDUFS7-210ENST00000539480 1743 ntTSL 2 BASIC13.57□□□□□ -0.24
HLA-DMBP28068 OGFR-201ENST00000290291 2410 ntAPPRIS P2 TSL 1 (best) BASIC13.57□□□□□ -0.24
HLA-DMBP28068 EDARADD-201ENST00000334232 858 ntTSL 1 (best) BASIC13.57□□□□□ -0.24
HLA-DMBP28068 TRPT1-202ENST00000394546 1058 ntAPPRIS ALT1 TSL 5 BASIC13.57□□□□□ -0.24
HLA-DMBP28068 HAGLR-204ENST00000425005 623 ntTSL 3 BASIC13.57□□□□□ -0.24
HLA-DMBP28068 BX664615.1-201ENST00000443558 458 ntBASIC13.57□□□□□ -0.24
HLA-DMBP28068 AC104596.1-202ENST00000507486 759 ntTSL 3 BASIC13.57□□□□□ -0.24
HLA-DMBP28068 DUTP2-201ENST00000519164 463 ntBASIC13.57□□□□□ -0.24
HLA-DMBP28068 RPL26L1-205ENST00000519974 695 ntAPPRIS P1 TSL 3 BASIC13.57□□□□□ -0.24
HLA-DMBP28068 AC012213.1-202ENST00000523422 449 ntTSL 3 BASIC13.57□□□□□ -0.24
HLA-DMBP28068 C12orf43-206ENST00000537817 1270 ntAPPRIS ALT2 TSL 1 (best) BASIC13.57□□□□□ -0.24
HLA-DMBP28068 TRPT1-210ENST00000541278 941 ntTSL 2 BASIC13.57□□□□□ -0.24
HLA-DMBP28068 TXNL4A-211ENST00000592837 611 ntTSL 2 BASIC13.57□□□□□ -0.24
HLA-DMBP28068 AC022154.1-201ENST00000600303 766 ntTSL 3 BASIC13.57□□□□□ -0.24
Retrieved 100 of 98,524 protein–RNA pairs in 42.9 ms