Protein–RNA interactions for Protein: P23560

BDNF, Brain-derived neurotrophic factor, humanhuman

Predictions only

Length 247 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
BDNFP23560 PCCB-207ENST00000466072 1844 ntAPPRIS ALT2 TSL 3 BASIC18.74■□□□□ 0.59
BDNFP23560 COPS7A-210ENST00000539735 1832 ntAPPRIS P1 TSL 5 BASIC18.74■□□□□ 0.59
BDNFP23560 AC135050.7-201ENST00000624508 2218 ntBASIC18.74■□□□□ 0.59
BDNFP23560 EFR3A-201ENST00000254624 5438 ntAPPRIS P1 TSL 1 (best) BASIC18.74■□□□□ 0.59
BDNFP23560 BAG5-201ENST00000299204 4848 ntAPPRIS P1 TSL 1 (best) BASIC18.74■□□□□ 0.59
BDNFP23560 COLEC11-206ENST00000403096 1557 ntTSL 1 (best) BASIC18.74■□□□□ 0.59
BDNFP23560 MRPL52-202ENST00000355151 1118 ntAPPRIS ALT1 TSL 1 (best) BASIC18.74■□□□□ 0.59
BDNFP23560 COX5BP2-201ENST00000392354 334 ntBASIC18.74■□□□□ 0.59
BDNFP23560 MRPL52-203ENST00000397496 1111 ntAPPRIS P3 TSL 2 BASIC18.74■□□□□ 0.59
BDNFP23560 MRPL3P1-201ENST00000400109 1033 ntBASIC18.74■□□□□ 0.59
BDNFP23560 SLC9A3R1-202ENST00000413388 1285 ntTSL 2 BASIC18.74■□□□□ 0.59
BDNFP23560 RBM17P3-201ENST00000417687 1192 ntBASIC18.74■□□□□ 0.59
BDNFP23560 TSTD3-201ENST00000452647 962 ntAPPRIS P2 TSL 2 BASIC18.74■□□□□ 0.59
BDNFP23560 FGFR3P6-201ENST00000457012 610 ntBASIC18.74■□□□□ 0.59
BDNFP23560 AL356056.2-201ENST00000506914 669 ntTSL 4 BASIC18.74■□□□□ 0.59
BDNFP23560 IRF8-202ENST00000562492 946 ntTSL 3 BASIC18.74■□□□□ 0.59
BDNFP23560 AC116407.2-201ENST00000613639 860 ntBASIC18.74■□□□□ 0.59
BDNFP23560 AC007040.2-201ENST00000606025 4170 ntAPPRIS P1 TSL 5 BASIC18.74■□□□□ 0.59
BDNFP23560 ZNF397-204ENST00000585800 2046 ntTSL 5 BASIC18.74■□□□□ 0.59
BDNFP23560 NOP9-202ENST00000396802 1942 ntTSL 5 BASIC18.74■□□□□ 0.59
BDNFP23560 PKN1-201ENST00000242783 3069 ntAPPRIS P1 TSL 1 (best) BASIC18.74■□□□□ 0.59
BDNFP23560 C8orf58-207ENST00000615223 1848 ntAPPRIS ALT2 TSL 5 BASIC18.74■□□□□ 0.59
BDNFP23560 UBP1-202ENST00000283629 4148 ntAPPRIS P3 TSL 1 (best) BASIC18.74■□□□□ 0.59
BDNFP23560 DICER1-AS1-204ENST00000554631 1709 ntTSL 2 BASIC18.74■□□□□ 0.59
BDNFP23560 SPDYE5-203ENST00000625065 1700 ntAPPRIS P2 TSL 5 BASIC18.74■□□□□ 0.59
BDNFP23560 TDRKH-207ENST00000458431 2768 ntAPPRIS P2 TSL 1 (best) BASIC18.74■□□□□ 0.59
BDNFP23560 PCCA-202ENST00000376285 2494 ntAPPRIS P1 TSL 1 (best) BASIC18.74■□□□□ 0.59
BDNFP23560 KCNC4-203ENST00000413138 3018 ntAPPRIS ALT2 TSL 5 BASIC18.74■□□□□ 0.59
BDNFP23560 KDELC1-201ENST00000376004 2060 ntAPPRIS P1 TSL 1 (best) BASIC18.73■□□□□ 0.59
BDNFP23560 MIS18BP1-212ENST00000627697 1950 ntTSL 5 BASIC18.73■□□□□ 0.59
BDNFP23560 TAB2-209ENST00000637181 4230 ntAPPRIS P1 TSL 1 (best) BASIC18.73■□□□□ 0.59
BDNFP23560 AL354751.1-201ENST00000412768 1863 ntBASIC18.73■□□□□ 0.59
BDNFP23560 HES1-201ENST00000232424 1578 ntAPPRIS P1 TSL 1 (best) BASIC18.73■□□□□ 0.59
BDNFP23560 FAM213B-201ENST00000378424 2765 ntAPPRIS ALT2 TSL 5 BASIC18.73■□□□□ 0.59
BDNFP23560 CHRFAM7A-202ENST00000397827 2794 ntTSL 5 BASIC18.73■□□□□ 0.59
BDNFP23560 LHFPL6-201ENST00000379589 2110 ntAPPRIS P1 TSL 1 (best) BASIC18.73■□□□□ 0.59
BDNFP23560 ZNF487-202ENST00000437590 2111 ntTSL 2 BASIC18.73■□□□□ 0.59
BDNFP23560 AMZ2-203ENST00000392720 1378 ntAPPRIS P1 TSL 1 (best) BASIC18.73■□□□□ 0.59
BDNFP23560 HCG11-201ENST00000411553 5696 ntBASIC18.73■□□□□ 0.59
BDNFP23560 C11orf80-203ENST00000525449 1821 ntAPPRIS ALT2 TSL 1 (best) BASIC18.73■□□□□ 0.59
BDNFP23560 GML-201ENST00000220940 723 ntAPPRIS P1 TSL 1 (best) BASIC18.73■□□□□ 0.59
BDNFP23560 NXPH2-201ENST00000272641 1052 ntAPPRIS P1 TSL 1 (best) BASIC18.73■□□□□ 0.59
BDNFP23560 FIGNL1-207ENST00000435566 593 ntTSL 4 BASIC18.73■□□□□ 0.59
BDNFP23560 FAM197Y8-203ENST00000450145 560 ntBASIC18.73■□□□□ 0.59
BDNFP23560 PQLC2L-205ENST00000461040 563 ntAPPRIS ALT2 TSL 3 BASIC18.73■□□□□ 0.59
BDNFP23560 AC122714.2-201ENST00000502787 707 ntBASIC18.73■□□□□ 0.59
BDNFP23560 AC003688.1-201ENST00000577138 489 ntAPPRIS P1 TSL 3 BASIC18.73■□□□□ 0.59
BDNFP23560 KCNMA1-278ENST00000640141 5705 ntAPPRIS ALT2 TSL 5 BASIC18.73■□□□□ 0.59
BDNFP23560 BMS1P4-202ENST00000584747 1716 ntTSL 1 (best) BASIC18.73■□□□□ 0.59
BDNFP23560 FAM46A-203ENST00000369756 5537 ntAPPRIS ALT2 TSL 1 (best) BASIC18.73■□□□□ 0.59
BDNFP23560 DSCR9-201ENST00000454482 1644 ntTSL 1 (best) BASIC18.73■□□□□ 0.59
BDNFP23560 DCAF8-218ENST00000610139 1607 ntTSL 1 (best) BASIC18.73■□□□□ 0.59
BDNFP23560 PLA2G4C-222ENST00000599921 1984 ntAPPRIS P3 TSL 1 (best) BASIC18.73■□□□□ 0.59
BDNFP23560 CADPS-201ENST00000283269 4591 ntAPPRIS P4 TSL 1 (best) BASIC18.73■□□□□ 0.59
BDNFP23560 AL445238.1-203ENST00000606050 1525 ntTSL 2 BASIC18.73■□□□□ 0.59
BDNFP23560 SAMD11-212ENST00000617307 2314 ntAPPRIS ALT2 TSL 5 BASIC18.73■□□□□ 0.59
BDNFP23560 NOTCH2NL-201ENST00000362074 1874 ntAPPRIS P2 TSL 1 (best) BASIC18.73■□□□□ 0.59
BDNFP23560 ADAMTS16-203ENST00000511368 2682 ntTSL 1 (best) BASIC18.73■□□□□ 0.59
BDNFP23560 LINC00683-201ENST00000578803 2221 ntTSL 2 BASIC18.73■□□□□ 0.59
BDNFP23560 SIRPAP1-201ENST00000448467 1770 ntBASIC18.73■□□□□ 0.59
BDNFP23560 PLD3-207ENST00000409735 2140 ntAPPRIS P1 TSL 1 (best) BASIC18.73■□□□□ 0.59
BDNFP23560 WSCD1-209ENST00000574232 2129 ntAPPRIS P1 TSL 5 BASIC18.73■□□□□ 0.59
BDNFP23560 C2orf27B-201ENST00000623129 1325 ntTSL 1 (best) BASIC18.73■□□□□ 0.59
BDNFP23560 SLC39A5-201ENST00000266980 2031 ntAPPRIS P1 TSL 1 (best) BASIC18.73■□□□□ 0.59
BDNFP23560 PLCL2-204ENST00000615277 4147 ntAPPRIS ALT2 TSL 1 (best) BASIC18.72■□□□□ 0.59
BDNFP23560 PRSS53-201ENST00000280606 2181 ntAPPRIS P1 TSL 1 (best) BASIC18.72■□□□□ 0.59
BDNFP23560 LYRM9-203ENST00000460380 2196 ntTSL 2 BASIC18.72■□□□□ 0.59
BDNFP23560 TMEM237-213ENST00000621467 1824 ntAPPRIS ALT2 TSL 1 (best) BASIC18.72■□□□□ 0.59
BDNFP23560 KRT6A-201ENST00000330722 2310 ntAPPRIS P1 TSL 1 (best) BASIC18.72■□□□□ 0.59
BDNFP23560 PAN3-AS1-201ENST00000563843 1351 ntBASIC18.72■□□□□ 0.59
BDNFP23560 NOMO1-201ENST00000287667 4355 ntAPPRIS P2 TSL 1 (best) BASIC18.72■□□□□ 0.59
BDNFP23560 RAPGEF5-203ENST00000405243 2800 ntTSL 1 (best) BASIC18.72■□□□□ 0.59
BDNFP23560 AL590648.2-201ENST00000427949 2225 ntTSL 2 BASIC18.72■□□□□ 0.59
BDNFP23560 ZNF133-211ENST00000538547 2245 ntTSL 2 BASIC18.72■□□□□ 0.59
BDNFP23560 LZTS1-203ENST00000522290 1614 ntTSL 1 (best) BASIC18.72■□□□□ 0.59
BDNFP23560 TCEAL2-201ENST00000329035 1080 ntAPPRIS P1 TSL 5 BASIC18.72■□□□□ 0.59
BDNFP23560 IGLL1-202ENST00000330377 901 ntAPPRIS P1 TSL 1 (best) BASIC18.72■□□□□ 0.59
BDNFP23560 MOK-208ENST00000519058 917 ntTSL 2 BASIC18.72■□□□□ 0.59
BDNFP23560 ASB7-203ENST00000558747 2133 ntTSL 5 BASIC18.72■□□□□ 0.59
BDNFP23560 SPAG7-207ENST00000575142 1094 ntTSL 1 (best) BASIC18.72■□□□□ 0.59
BDNFP23560 SLC25A6P4-201ENST00000586535 553 ntBASIC18.72■□□□□ 0.59
BDNFP23560 WDR88-203ENST00000592765 651 ntTSL 5 BASIC18.72■□□□□ 0.59
BDNFP23560 C11orf68-203ENST00000530188 1528 ntAPPRIS ALT2 BASIC18.72■□□□□ 0.59
BDNFP23560 KRT18P55-202ENST00000578578 1546 ntBASIC18.72■□□□□ 0.59
BDNFP23560 NSUN5P2-205ENST00000602348 1776 ntTSL 1 (best) BASIC18.72■□□□□ 0.59
BDNFP23560 TCP11-201ENST00000244645 2018 ntAPPRIS P3 TSL 1 (best) BASIC18.72■□□□□ 0.59
BDNFP23560 RAB11FIP2-202ENST00000369199 6119 ntTSL 1 (best) BASIC18.72■□□□□ 0.59
BDNFP23560 MCUR1-201ENST00000379170 5471 ntAPPRIS P1 TSL 1 (best) BASIC18.72■□□□□ 0.59
BDNFP23560 CD276-201ENST00000318424 2738 ntTSL 5 BASIC18.72■□□□□ 0.59
BDNFP23560 IFFO1-212ENST00000619571 2724 ntTSL 2 BASIC18.72■□□□□ 0.59
BDNFP23560 EMC8-201ENST00000253457 1962 ntAPPRIS P1 TSL 1 (best) BASIC18.72■□□□□ 0.59
BDNFP23560 PEX5L-206ENST00000465751 2147 ntAPPRIS ALT2 TSL 2 BASIC18.71■□□□□ 0.59
BDNFP23560 GPRC5B-201ENST00000300571 5213 ntAPPRIS P2 TSL 1 (best) BASIC18.71■□□□□ 0.59
BDNFP23560 SLCO4A1-201ENST00000217159 2776 ntAPPRIS P1 TSL 1 (best) BASIC18.71■□□□□ 0.59
BDNFP23560 PTGES2-201ENST00000277462 1614 ntTSL 2 BASIC18.71■□□□□ 0.59
BDNFP23560 FOXD4L6-201ENST00000622588 2034 ntAPPRIS P1 BASIC18.71■□□□□ 0.59
BDNFP23560 AKAP17A-201ENST00000313871 3204 ntAPPRIS P2 TSL 1 (best) BASIC18.71■□□□□ 0.59
BDNFP23560 GJB6-204ENST00000400066 1927 ntAPPRIS P1 TSL 1 (best) BASIC18.71■□□□□ 0.59
BDNFP23560 ETFBKMT-202ENST00000395763 2055 ntAPPRIS P1 TSL 1 (best) BASIC18.71■□□□□ 0.59
BDNFP23560 LCE1F-201ENST00000334371 357 ntAPPRIS P1 BASIC18.71■□□□□ 0.59
Retrieved 100 of 98,524 protein–RNA pairs in 26.3 ms