Protein–RNA interactions for Protein: P16234

PDGFRA, Platelet-derived growth factor receptor alpha, humanhuman

Predictions only

Length 1,089 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
PDGFRAP16234 UBE3A-201ENST00000232165 5051 ntAPPRIS P3 TSL 5 BASIC18.68■□□□□ 0.58
PDGFRAP16234 RPS6KA5-201ENST00000418736 2249 ntTSL 1 (best) BASIC18.68■□□□□ 0.58
PDGFRAP16234 ZNF500-202ENST00000545009 2440 ntTSL 2 BASIC18.68■□□□□ 0.58
PDGFRAP16234 MRPS34-201ENST00000177742 1040 ntTSL 1 (best) BASIC18.68■□□□□ 0.58
PDGFRAP16234 PGLS-201ENST00000252603 1028 ntAPPRIS P1 TSL 1 (best) BASIC18.68■□□□□ 0.58
PDGFRAP16234 KCNK7-202ENST00000342202 1283 ntTSL 1 (best) BASIC18.68■□□□□ 0.58
PDGFRAP16234 CXorf40A-202ENST00000393985 1148 ntAPPRIS P3 TSL 1 (best) BASIC18.68■□□□□ 0.58
PDGFRAP16234 ATP5G2P1-201ENST00000433580 426 ntBASIC18.68■□□□□ 0.58
PDGFRAP16234 BOC-211ENST00000484034 1286 ntTSL 1 (best) BASIC18.68■□□□□ 0.58
PDGFRAP16234 HNF4A-208ENST00000609795 1192 ntTSL 1 (best) BASIC18.68■□□□□ 0.58
PDGFRAP16234 TXNDC12-205ENST00000610127 806 ntTSL 2 BASIC18.68■□□□□ 0.58
PDGFRAP16234 AL592071.1-201ENST00000611956 408 ntBASIC18.68■□□□□ 0.58
PDGFRAP16234 MRPS5-201ENST00000272418 1652 ntAPPRIS P1 TSL 1 (best) BASIC18.68■□□□□ 0.58
PDGFRAP16234 PRELID3A-203ENST00000587735 1694 ntTSL 1 (best) BASIC18.68■□□□□ 0.58
PDGFRAP16234 FZR1-203ENST00000441788 5212 ntAPPRIS P3 TSL 1 (best) BASIC18.68■□□□□ 0.58
PDGFRAP16234 LUC7L-202ENST00000337351 2097 ntTSL 1 (best) BASIC18.68■□□□□ 0.58
PDGFRAP16234 UBE2D2-202ENST00000398733 2702 ntAPPRIS P2 TSL 1 (best) BASIC18.68■□□□□ 0.58
PDGFRAP16234 CLK2-202ENST00000361168 1934 ntAPPRIS P3 TSL 1 (best) BASIC18.68■□□□□ 0.58
PDGFRAP16234 IMP4-201ENST00000259239 1740 ntAPPRIS P1 TSL 1 (best) BASIC18.68■□□□□ 0.58
PDGFRAP16234 PSRC1-204ENST00000369909 1742 ntAPPRIS P3 TSL 1 (best) BASIC18.68■□□□□ 0.58
PDGFRAP16234 PACRGL-203ENST00000444671 1720 ntTSL 2 BASIC18.68■□□□□ 0.58
PDGFRAP16234 MYOG-201ENST00000241651 1528 ntAPPRIS P1 TSL 1 (best) BASIC18.68■□□□□ 0.58
PDGFRAP16234 DNASE1L2-201ENST00000320700 1326 ntTSL 1 (best) BASIC18.68■□□□□ 0.58
PDGFRAP16234 PIK3R2-201ENST00000222254 4033 ntAPPRIS P1 TSL 1 (best) BASIC18.68■□□□□ 0.58
PDGFRAP16234 CACNA1A-247ENST00000637769 8648 ntAPPRIS ALT2 TSL 1 (best) BASIC18.68■□□□□ 0.58
PDGFRAP16234 GLYCTK-201ENST00000305690 1371 ntTSL 5 BASIC18.68■□□□□ 0.58
PDGFRAP16234 RBFADN-201ENST00000562391 1350 ntTSL 1 (best) BASIC18.68■□□□□ 0.58
PDGFRAP16234 MARK2-207ENST00000502399 2885 ntAPPRIS ALT2 TSL 5 BASIC18.67■□□□□ 0.58
PDGFRAP16234 MSC-201ENST00000325509 2023 ntAPPRIS P1 TSL 1 (best) BASIC18.67■□□□□ 0.58
PDGFRAP16234 OR6D1P-202ENST00000641007 5290 ntBASIC18.67■□□□□ 0.58
PDGFRAP16234 SIGIRR-201ENST00000332725 1639 ntAPPRIS P1 TSL 2 BASIC18.67■□□□□ 0.58
PDGFRAP16234 CRMP1-202ENST00000397890 2911 ntAPPRIS P1 TSL 1 (best) BASIC18.67■□□□□ 0.58
PDGFRAP16234 SH3BP5-203ENST00000408919 1880 ntTSL 1 (best) BASIC18.67■□□□□ 0.58
PDGFRAP16234 NKIRAS1-207ENST00000437230 1898 ntAPPRIS ALT1 TSL 5 BASIC18.67■□□□□ 0.58
PDGFRAP16234 AP005717.1-201ENST00000500705 1899 ntTSL 5 BASIC18.67■□□□□ 0.58
PDGFRAP16234 SNED1-204ENST00000401884 4538 ntAPPRIS ALT2 TSL 5 BASIC18.67■□□□□ 0.58
PDGFRAP16234 LINC00896-202ENST00000609602 2128 ntBASIC18.67■□□□□ 0.58
PDGFRAP16234 PTCHD3-202ENST00000622555 1720 ntTSL 1 (best) BASIC18.67■□□□□ 0.58
PDGFRAP16234 RPL8-202ENST00000394920 965 ntAPPRIS P1 TSL 1 (best) BASIC18.67■□□□□ 0.58
PDGFRAP16234 CHCHD2P8-201ENST00000429873 447 ntBASIC18.67■□□□□ 0.58
PDGFRAP16234 AP002383.4-201ENST00000442518 975 ntBASIC18.67■□□□□ 0.58
PDGFRAP16234 AL162258.2-202ENST00000469931 831 ntTSL 5 BASIC18.67■□□□□ 0.58
PDGFRAP16234 KRT18P56-201ENST00000507275 550 ntBASIC18.67■□□□□ 0.58
PDGFRAP16234 AC106791.1-202ENST00000508281 1148 ntTSL 2 BASIC18.67■□□□□ 0.58
PDGFRAP16234 HOXB8-203ENST00000576562 743 ntAPPRIS ALT1 TSL 2 BASIC18.67■□□□□ 0.58
PDGFRAP16234 LINC00910-203ENST00000587874 544 ntTSL 4 BASIC18.67■□□□□ 0.58
PDGFRAP16234 LINC01714-202ENST00000635451 896 ntTSL 5 BASIC18.67■□□□□ 0.58
PDGFRAP16234 PIF1-201ENST00000268043 2687 ntAPPRIS P1 TSL 1 (best) BASIC18.67■□□□□ 0.58
PDGFRAP16234 POLR1D-221ENST00000637180 2262 ntTSL 5 BASIC18.67■□□□□ 0.58
PDGFRAP16234 RBM17-201ENST00000379888 2755 ntAPPRIS P1 TSL 1 (best) BASIC18.67■□□□□ 0.58
PDGFRAP16234 ECE2-201ENST00000324557 1823 ntTSL 1 (best) BASIC18.67■□□□□ 0.58
PDGFRAP16234 FDXR-202ENST00000413947 1809 ntTSL 2 BASIC18.67■□□□□ 0.58
PDGFRAP16234 ZDHHC8P1-204ENST00000433168 2309 ntTSL 2 BASIC18.67■□□□□ 0.58
PDGFRAP16234 ZNF454-202ENST00000519564 2142 ntAPPRIS P1 TSL 2 BASIC18.67■□□□□ 0.58
PDGFRAP16234 ZNF211-211ENST00000541801 2629 ntAPPRIS ALT2 TSL 3 BASIC18.67■□□□□ 0.58
PDGFRAP16234 IL18BP-207ENST00000404792 2172 ntAPPRIS P2 TSL 1 (best) BASIC18.66■□□□□ 0.58
PDGFRAP16234 TRAF3IP1-201ENST00000373327 4279 ntAPPRIS P3 TSL 1 (best) BASIC18.66■□□□□ 0.58
PDGFRAP16234 SLC39A1-210ENST00000617697 2214 ntAPPRIS P1 TSL 5 BASIC18.66■□□□□ 0.58
PDGFRAP16234 AC026471.1-201ENST00000564629 3026 ntBASIC18.66■□□□□ 0.58
PDGFRAP16234 KDM1A-202ENST00000400181 3059 ntAPPRIS ALT2 TSL 1 (best) BASIC18.66■□□□□ 0.58
PDGFRAP16234 PRPF31-202ENST00000391755 1767 ntTSL 5 BASIC18.66■□□□□ 0.58
PDGFRAP16234 QPRT-202ENST00000395384 2343 ntAPPRIS P1 TSL 1 (best) BASIC18.66■□□□□ 0.58
PDGFRAP16234 TUFM-201ENST00000313511 2071 ntAPPRIS P1 TSL 1 (best) BASIC18.66■□□□□ 0.58
PDGFRAP16234 ADK-202ENST00000372734 2083 ntAPPRIS ALT1 TSL 1 (best) BASIC18.66■□□□□ 0.58
PDGFRAP16234 AC133561.2-201ENST00000380145 1802 ntTSL 2 BASIC18.66■□□□□ 0.58
PDGFRAP16234 ABHD14B-203ENST00000395008 1818 ntAPPRIS P1 TSL 1 (best) BASIC18.66■□□□□ 0.58
PDGFRAP16234 EFCAB2-203ENST00000366523 1233 ntAPPRIS P1 TSL 3 BASIC18.66■□□□□ 0.58
PDGFRAP16234 INPP5F-203ENST00000369081 874 ntTSL 1 (best) BASIC18.66■□□□□ 0.58
PDGFRAP16234 NEURL2-201ENST00000372518 1278 ntAPPRIS P1 TSL 1 (best) BASIC18.66■□□□□ 0.58
PDGFRAP16234 MPIG6B-205ENST00000375810 910 ntAPPRIS ALT2 TSL 1 (best) BASIC18.66■□□□□ 0.58
PDGFRAP16234 SPEG-204ENST00000396689 1274 ntTSL 1 (best) BASIC18.66■□□□□ 0.58
PDGFRAP16234 SSR4P1-202ENST00000429427 967 ntTSL 5 BASIC18.66■□□□□ 0.58
PDGFRAP16234 ZNF655-218ENST00000454654 571 ntTSL 4 BASIC18.66■□□□□ 0.58
PDGFRAP16234 AC010655.4-201ENST00000462662 707 ntTSL 4 BASIC18.66■□□□□ 0.58
PDGFRAP16234 MTG1-205ENST00000477902 1283 ntTSL 3 BASIC18.66■□□□□ 0.58
PDGFRAP16234 TNNT1-204ENST00000585321 995 ntAPPRIS ALT2 TSL 5 BASIC18.66■□□□□ 0.58
PDGFRAP16234 AP002414.4-201ENST00000589764 1148 ntBASIC18.66■□□□□ 0.58
PDGFRAP16234 RNF166-203ENST00000541206 2419 ntTSL 2 BASIC18.66■□□□□ 0.58
PDGFRAP16234 HECTD2-203ENST00000371681 2175 ntTSL 2 BASIC18.66■□□□□ 0.58
PDGFRAP16234 PTTG1IP-201ENST00000330938 2760 ntAPPRIS P1 TSL 1 (best) BASIC18.66■□□□□ 0.58
PDGFRAP16234 CCDC157-203ENST00000405659 3052 ntAPPRIS P3 TSL 1 (best) BASIC18.66■□□□□ 0.58
PDGFRAP16234 HLA-A-203ENST00000376809 1611 ntAPPRIS P1 BASIC18.66■□□□□ 0.58
PDGFRAP16234 RAB4B-EGLN2-201ENST00000594136 2554 ntAPPRIS P1 TSL 2 BASIC18.66■□□□□ 0.58
PDGFRAP16234 SLCO6A1-202ENST00000389019 2340 ntTSL 1 (best) BASIC18.66■□□□□ 0.58
PDGFRAP16234 CTSB-204ENST00000453527 2011 ntAPPRIS P1 TSL 2 BASIC18.66■□□□□ 0.58
PDGFRAP16234 RAB28-202ENST00000330852 1715 ntAPPRIS ALT1 TSL 1 (best) BASIC18.66■□□□□ 0.58
PDGFRAP16234 SCNN1D-201ENST00000325425 2679 ntAPPRIS ALT2 TSL 1 (best) BASIC18.66■□□□□ 0.58
PDGFRAP16234 TOR3A-203ENST00000367627 2724 ntAPPRIS P1 TSL 1 (best) BASIC18.65■□□□□ 0.58
PDGFRAP16234 NETO1-201ENST00000327305 3058 ntAPPRIS P1 TSL 1 (best) BASIC18.65■□□□□ 0.58
PDGFRAP16234 POLD4-205ENST00000529704 1486 ntTSL 2 BASIC18.65■□□□□ 0.58
PDGFRAP16234 TMEM110-201ENST00000355083 4769 ntAPPRIS P1 TSL 1 (best) BASIC18.65■□□□□ 0.58
PDGFRAP16234 KCNC2-203ENST00000393288 2485 ntAPPRIS ALT2 TSL 1 (best) BASIC18.65■□□□□ 0.58
PDGFRAP16234 PLCB3-204ENST00000540288 4469 ntAPPRIS P1 TSL 1 (best) BASIC18.65■□□□□ 0.58
PDGFRAP16234 LTV1-201ENST00000367576 1847 ntAPPRIS P1 TSL 1 (best) BASIC18.65■□□□□ 0.58
PDGFRAP16234 CHRD-202ENST00000348986 3155 ntAPPRIS ALT2 TSL 5 BASIC18.65■□□□□ 0.58
PDGFRAP16234 AC068446.2-201ENST00000500487 2165 ntTSL 2 BASIC18.65■□□□□ 0.58
PDGFRAP16234 ZNF22-201ENST00000298299 2551 ntAPPRIS P1 TSL 1 (best) BASIC18.65■□□□□ 0.58
PDGFRAP16234 ARHGEF18-201ENST00000319670 5212 ntAPPRIS P3 TSL 1 (best) BASIC18.65■□□□□ 0.58
PDGFRAP16234 OPRK1-202ENST00000520287 1602 ntAPPRIS P1 TSL 1 (best) BASIC18.65■□□□□ 0.58
PDGFRAP16234 ELANE-201ENST00000263621 920 ntAPPRIS P1 TSL 1 (best) BASIC18.65■□□□□ 0.58
Retrieved 100 of 98,524 protein–RNA pairs in 41.2 ms