Protein–RNA interactions for Protein: O95398

RAPGEF3, Rap guanine nucleotide exchange factor 3, humanhuman

Predictions only

Length 923 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
RAPGEF3O95398 KRT3-201ENST00000417996 2319 ntAPPRIS P1 TSL 1 (best) BASIC26.45■■□□□ 1.82
RAPGEF3O95398 TRMT2A-203ENST00000404751 2498 ntAPPRIS ALT2 TSL 2 BASIC26.45■■□□□ 1.82
RAPGEF3O95398 LGALS9C-201ENST00000328114 1730 ntAPPRIS P2 TSL 1 (best) BASIC26.45■■□□□ 1.82
RAPGEF3O95398 R3HDML-201ENST00000217043 1377 ntAPPRIS P1 TSL 1 (best) BASIC26.45■■□□□ 1.82
RAPGEF3O95398 CLDN6-201ENST00000328796 1369 ntAPPRIS P1 TSL 1 (best) BASIC26.45■■□□□ 1.82
RAPGEF3O95398 USP39-201ENST00000323701 2177 ntAPPRIS P1 TSL 1 (best) BASIC26.44■■□□□ 1.82
RAPGEF3O95398 BID-204ENST00000399767 2129 ntTSL 2 BASIC26.44■■□□□ 1.82
RAPGEF3O95398 LTK-202ENST00000355166 2940 ntAPPRIS ALT2 TSL 1 (best) BASIC26.44■■□□□ 1.82
RAPGEF3O95398 FAM234A-202ENST00000301679 1936 ntTSL 2 BASIC26.44■■□□□ 1.82
RAPGEF3O95398 RUNDC3B-203ENST00000394654 2064 ntAPPRIS P4 TSL 2 BASIC26.44■■□□□ 1.82
RAPGEF3O95398 VMA21-202ENST00000370361 693 ntTSL 5 BASIC26.44■■□□□ 1.82
RAPGEF3O95398 LRRC37A5P-201ENST00000374304 1103 ntTSL 1 (best) BASIC26.44■■□□□ 1.82
RAPGEF3O95398 AC002056.1-201ENST00000395613 760 ntBASIC26.44■■□□□ 1.82
RAPGEF3O95398 FYCO1-203ENST00000438446 1072 ntTSL 5 BASIC26.44■■□□□ 1.82
RAPGEF3O95398 FGFR2-211ENST00000369059 3003 ntTSL 5 BASIC26.44■■□□□ 1.82
RAPGEF3O95398 TSNAXIP1-202ENST00000415766 2338 ntAPPRIS ALT2 TSL 2 BASIC26.44■■□□□ 1.82
RAPGEF3O95398 PITPNB-205ENST00000455418 2963 ntAPPRIS ALT1 TSL 5 BASIC26.43■■□□□ 1.82
RAPGEF3O95398 ACHE-205ENST00000419336 1906 ntTSL 1 (best) BASIC26.43■■□□□ 1.82
RAPGEF3O95398 AC002310.2-202ENST00000492040 1488 ntTSL 1 (best) BASIC26.43■■□□□ 1.82
RAPGEF3O95398 DUOXA1-202ENST00000430224 1317 ntTSL 1 (best) BASIC26.43■■□□□ 1.82
RAPGEF3O95398 TMTC1-203ENST00000539277 2758 ntAPPRIS P2 TSL 1 (best) BASIC26.43■■□□□ 1.82
RAPGEF3O95398 DNAAF4-202ENST00000348518 1897 ntAPPRIS P1 TSL 5 BASIC26.43■■□□□ 1.82
RAPGEF3O95398 ESPN-205ENST00000461727 1869 ntTSL 1 (best) BASIC26.43■■□□□ 1.82
RAPGEF3O95398 CHST1-201ENST00000308064 2718 ntAPPRIS P1 TSL 1 (best) BASIC26.43■■□□□ 1.82
RAPGEF3O95398 SSR4-204ENST00000370087 745 ntAPPRIS P1 TSL 3 BASIC26.43■■□□□ 1.82
RAPGEF3O95398 TFPT-203ENST00000391759 1205 ntAPPRIS P3 TSL 1 (best) BASIC26.43■■□□□ 1.82
RAPGEF3O95398 AL137003.1-201ENST00000423260 491 ntTSL 5 BASIC26.43■■□□□ 1.82
RAPGEF3O95398 AC004865.2-202ENST00000444348 852 ntTSL 3 BASIC26.43■■□□□ 1.82
RAPGEF3O95398 SPDYE11-202ENST00000450699 704 ntBASIC26.43■■□□□ 1.82
RAPGEF3O95398 AC002310.2-201ENST00000486926 950 ntTSL 2 BASIC26.43■■□□□ 1.82
RAPGEF3O95398 STK19B-204ENST00000512515 211 ntBASIC26.43■■□□□ 1.82
RAPGEF3O95398 CR383656.12-201ENST00000549567 513 ntBASIC26.43■■□□□ 1.82
RAPGEF3O95398 RPL28-209ENST00000560055 670 ntTSL 3 BASIC26.43■■□□□ 1.82
RAPGEF3O95398 SPDYE9P-201ENST00000570642 692 ntBASIC26.43■■□□□ 1.82
RAPGEF3O95398 SPDYE10P-202ENST00000612005 668 ntBASIC26.43■■□□□ 1.82
RAPGEF3O95398 SPDYE8P-202ENST00000612377 668 ntBASIC26.43■■□□□ 1.82
RAPGEF3O95398 FKBP4-208ENST00000630279 156 ntTSL 5 BASIC26.43■■□□□ 1.82
RAPGEF3O95398 ANKMY1-209ENST00000405523 1827 ntTSL 1 (best) BASIC26.43■■□□□ 1.82
RAPGEF3O95398 RNF2-201ENST00000367509 1677 ntTSL 2 BASIC26.43■■□□□ 1.82
RAPGEF3O95398 CLPB-202ENST00000340729 2071 ntTSL 2 BASIC26.43■■□□□ 1.82
RAPGEF3O95398 FAM172A-206ENST00000509163 1369 ntTSL 2 BASIC26.43■■□□□ 1.82
RAPGEF3O95398 ZNF707-201ENST00000358656 2183 ntAPPRIS P1 TSL 2 BASIC26.43■■□□□ 1.82
RAPGEF3O95398 SYT7-206ENST00000540677 2013 ntTSL 1 (best) BASIC26.43■■□□□ 1.82
RAPGEF3O95398 AC087482.1-204ENST00000636067 2431 ntTSL 5 BASIC26.43■■□□□ 1.82
RAPGEF3O95398 CXXC1-202ENST00000412036 2280 ntAPPRIS ALT1 TSL 1 (best) BASIC26.42■■□□□ 1.82
RAPGEF3O95398 MATN4-205ENST00000537548 1991 ntAPPRIS ALT2 TSL 5 BASIC26.42■■□□□ 1.82
RAPGEF3O95398 BRAF-201ENST00000288602 2480 ntAPPRIS P1 TSL 1 (best) BASIC26.42■■□□□ 1.82
RAPGEF3O95398 GCAT-202ENST00000323205 1656 ntTSL 2 BASIC26.42■■□□□ 1.82
RAPGEF3O95398 ZNF787-202ENST00000587279 1657 ntTSL 2 BASIC26.42■■□□□ 1.82
RAPGEF3O95398 CD99L2-202ENST00000355149 1278 ntAPPRIS ALT2 TSL 1 (best) BASIC26.42■■□□□ 1.82
RAPGEF3O95398 ADIRF-201ENST00000372013 917 ntAPPRIS P1 TSL 1 (best) BASIC26.42■■□□□ 1.82
RAPGEF3O95398 RPL30-202ENST00000396070 440 ntTSL 2 BASIC26.42■■□□□ 1.82
RAPGEF3O95398 KRT18P32-201ENST00000424695 1287 ntBASIC26.42■■□□□ 1.82
RAPGEF3O95398 AC082651.1-201ENST00000478468 832 ntTSL 1 (best) BASIC26.42■■□□□ 1.82
RAPGEF3O95398 AC125807.1-201ENST00000483097 614 ntBASIC26.42■■□□□ 1.82
RAPGEF3O95398 LACTB2-203ENST00000522447 1034 ntAPPRIS P1 TSL 2 BASIC26.42■■□□□ 1.82
RAPGEF3O95398 AP000275.2-202ENST00000553001 929 ntTSL 5 BASIC26.42■■□□□ 1.82
RAPGEF3O95398 AC243562.1-201ENST00000560672 389 ntBASIC26.42■■□□□ 1.82
RAPGEF3O95398 GMFG-207ENST00000598034 1028 ntAPPRIS ALT1 TSL 1 (best) BASIC26.42■■□□□ 1.82
RAPGEF3O95398 AC092070.4-201ENST00000599803 507 ntTSL 5 BASIC26.42■■□□□ 1.82
RAPGEF3O95398 TMIGD2-203ENST00000600114 489 ntAPPRIS ALT2 TSL 1 (best) BASIC26.42■■□□□ 1.82
RAPGEF3O95398 C9orf43-202ENST00000374165 2049 ntAPPRIS P1 TSL 1 (best) BASIC26.42■■□□□ 1.82
RAPGEF3O95398 LAPTM4B-204ENST00000619747 2758 ntTSL 1 (best) BASIC26.42■■□□□ 1.82
RAPGEF3O95398 MAP4K1-203ENST00000586296 1363 ntTSL 5 BASIC26.42■■□□□ 1.82
RAPGEF3O95398 ADGRB1-202ENST00000517894 6241 ntAPPRIS P1 TSL 5 BASIC26.42■■□□□ 1.82
RAPGEF3O95398 PAQR9-201ENST00000340634 2452 ntAPPRIS P1 BASIC26.42■■□□□ 1.82
RAPGEF3O95398 PEX16-201ENST00000241041 1479 ntTSL 1 (best) BASIC26.42■■□□□ 1.82
RAPGEF3O95398 LYPLA2-205ENST00000374514 1810 ntAPPRIS P1 TSL 1 (best) BASIC26.42■■□□□ 1.82
RAPGEF3O95398 MFSD2A-203ENST00000420632 1914 ntTSL 2 BASIC26.41■■□□□ 1.82
RAPGEF3O95398 ERLEC1-202ENST00000378239 2271 ntAPPRIS ALT2 TSL 1 (best) BASIC26.41■■□□□ 1.82
RAPGEF3O95398 NARFL-201ENST00000251588 2112 ntAPPRIS P1 TSL 1 (best) BASIC26.41■■□□□ 1.82
RAPGEF3O95398 LPAR1-201ENST00000358883 2687 ntAPPRIS P2 TSL 2 BASIC26.41■■□□□ 1.82
RAPGEF3O95398 CABP2-201ENST00000294288 925 ntTSL 1 (best) BASIC26.41■■□□□ 1.82
RAPGEF3O95398 CD99L2-206ENST00000466436 988 ntAPPRIS P4 TSL 1 (best) BASIC26.41■■□□□ 1.82
RAPGEF3O95398 AL133467.1-201ENST00000554161 993 ntTSL 2 BASIC26.41■■□□□ 1.82
RAPGEF3O95398 SERF2-217ENST00000630046 862 ntTSL 5 BASIC26.41■■□□□ 1.82
RAPGEF3O95398 AC087500.1-202ENST00000571689 1715 ntTSL 1 (best) BASIC26.41■■□□□ 1.82
RAPGEF3O95398 CGREF1-205ENST00000404694 1376 ntAPPRIS ALT2 TSL 2 BASIC26.41■■□□□ 1.82
RAPGEF3O95398 TINAGL1-201ENST00000271064 2187 ntAPPRIS P3 TSL 1 (best) BASIC26.41■■□□□ 1.82
RAPGEF3O95398 MAGI2-217ENST00000629359 6704 ntTSL 5 BASIC26.41■■□□□ 1.82
RAPGEF3O95398 PARP16-202ENST00000444347 2352 ntTSL 2 BASIC26.41■■□□□ 1.82
RAPGEF3O95398 MLX-201ENST00000246912 2586 ntAPPRIS P3 TSL 1 (best) BASIC26.41■■□□□ 1.82
RAPGEF3O95398 TTC29-201ENST00000325106 1785 ntAPPRIS P3 TSL 1 (best) BASIC26.41■■□□□ 1.82
RAPGEF3O95398 TTC29-205ENST00000504425 1777 ntAPPRIS ALT2 TSL 5 BASIC26.41■■□□□ 1.82
RAPGEF3O95398 ISL2-201ENST00000290759 1881 ntAPPRIS P1 TSL 1 (best) BASIC26.4■■□□□ 1.82
RAPGEF3O95398 CERKL-205ENST00000409440 2425 ntTSL 2 BASIC26.4■■□□□ 1.82
RAPGEF3O95398 PQLC2L-201ENST00000312275 1201 ntAPPRIS ALT2 TSL 1 (best) BASIC26.4■■□□□ 1.82
RAPGEF3O95398 NME1-NME2-202ENST00000393193 1021 ntAPPRIS P2 TSL 2 BASIC26.4■■□□□ 1.82
RAPGEF3O95398 LINC01972-201ENST00000422271 553 ntTSL 3 BASIC26.4■■□□□ 1.82
RAPGEF3O95398 DICER1-AS1-202ENST00000439819 810 ntTSL 3 BASIC26.4■■□□□ 1.82
RAPGEF3O95398 RNASET2-206ENST00000476238 887 ntAPPRIS P1 TSL 5 BASIC26.4■■□□□ 1.82
RAPGEF3O95398 AL132711.1-201ENST00000557546 722 ntTSL 3 BASIC26.4■■□□□ 1.82
RAPGEF3O95398 COX5A-203ENST00000564811 568 ntAPPRIS P1 TSL 1 (best) BASIC26.4■■□□□ 1.82
RAPGEF3O95398 MIR6752-201ENST00000618442 71 ntBASIC26.4■■□□□ 1.82
RAPGEF3O95398 VGLL4-211ENST00000430365 1377 ntAPPRIS P1 TSL 2 BASIC26.4■■□□□ 1.82
RAPGEF3O95398 ACP6-201ENST00000392988 1555 ntTSL 1 (best) BASIC26.4■■□□□ 1.82
RAPGEF3O95398 AC009336.1-201ENST00000608941 1553 ntBASIC26.4■■□□□ 1.82
RAPGEF3O95398 CHAC1-204ENST00000617768 1560 ntTSL 1 (best) BASIC26.4■■□□□ 1.82
RAPGEF3O95398 SGCE-206ENST00000445866 1666 ntTSL 5 BASIC26.4■■□□□ 1.82
RAPGEF3O95398 SEPT2-203ENST00000391971 3315 ntAPPRIS P1 TSL 1 (best) BASIC26.4■■□□□ 1.82
Retrieved 100 of 98,524 protein–RNA pairs in 35.3 ms