Protein–RNA interactions for Protein: O95343

SIX3, Homeobox protein SIX3, humanhuman

Predicted RBP Predictions only

Length 332 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SIX3O95343 STARP1-201ENST00000397973 869 ntBASIC17.4■□□□□ 0.38
SIX3O95343 AC117947.1-201ENST00000427448 529 ntBASIC17.4■□□□□ 0.38
SIX3O95343 KRT18P48-201ENST00000434763 852 ntBASIC17.4■□□□□ 0.38
SIX3O95343 SNX5-210ENST00000481323 562 ntTSL 3 BASIC17.4■□□□□ 0.38
SIX3O95343 HELT-202ENST00000505610 846 ntAPPRIS ALT1 TSL 1 (best) BASIC17.4■□□□□ 0.38
SIX3O95343 APBB3-216ENST00000511201 1014 ntTSL 5 BASIC17.4■□□□□ 0.38
SIX3O95343 AC116407.2-201ENST00000613639 860 ntBASIC17.4■□□□□ 0.38
SIX3O95343 ILKAP-212ENST00000622223 1088 ntTSL 1 (best) BASIC17.4■□□□□ 0.38
SIX3O95343 AC073912.3-201ENST00000624414 853 ntBASIC17.4■□□□□ 0.38
SIX3O95343 ISLR2-203ENST00000435464 4259 ntAPPRIS P1 TSL 2 BASIC17.4■□□□□ 0.38
SIX3O95343 HSPB9-201ENST00000565659 1922 ntAPPRIS P1 BASIC17.4■□□□□ 0.38
SIX3O95343 DACH1-202ENST00000613252 5233 ntAPPRIS P2 TSL 1 (best) BASIC17.4■□□□□ 0.38
SIX3O95343 DBNDD2-204ENST00000372712 1537 ntAPPRIS P1 TSL 5 BASIC17.4■□□□□ 0.38
SIX3O95343 RABL6-203ENST00000371663 3078 ntAPPRIS ALT2 TSL 1 (best) BASIC17.4■□□□□ 0.38
SIX3O95343 NUAK1-201ENST00000261402 6828 ntAPPRIS P1 TSL 1 (best) BASIC17.4■□□□□ 0.38
SIX3O95343 CAMK2B-204ENST00000350811 2292 ntAPPRIS P4 TSL 2 BASIC17.4■□□□□ 0.38
SIX3O95343 NGFR-202ENST00000504201 1840 ntTSL 2 BASIC17.4■□□□□ 0.38
SIX3O95343 MAP3K6-201ENST00000357582 4136 ntAPPRIS P1 TSL 1 (best) BASIC17.4■□□□□ 0.38
SIX3O95343 LRFN3-201ENST00000246529 2513 ntAPPRIS P1 TSL 1 (best) BASIC17.4■□□□□ 0.38
SIX3O95343 RASA4-202ENST00000449970 2787 ntAPPRIS ALT1 TSL 2 BASIC17.4■□□□□ 0.38
SIX3O95343 ZNF211-201ENST00000240731 2440 ntAPPRIS P4 TSL 2 BASIC17.39■□□□□ 0.37
SIX3O95343 SMPD4-202ENST00000409031 4896 ntAPPRIS P1 TSL 1 (best) BASIC17.39■□□□□ 0.37
SIX3O95343 AGBL5-202ENST00000360131 3177 ntAPPRIS P3 TSL 1 (best) BASIC17.39■□□□□ 0.37
SIX3O95343 MED29-202ENST00000594368 1471 ntTSL 2 BASIC17.39■□□□□ 0.37
SIX3O95343 RHOV-201ENST00000220507 1705 ntAPPRIS P1 TSL 1 (best) BASIC17.39■□□□□ 0.37
SIX3O95343 PML-205ENST00000395132 1738 ntTSL 1 (best) BASIC17.39■□□□□ 0.37
SIX3O95343 ZSCAN10-207ENST00000575108 2247 ntTSL 2 BASIC17.39■□□□□ 0.37
SIX3O95343 PBX2-201ENST00000375050 3205 ntAPPRIS P1 TSL 1 (best) BASIC17.39■□□□□ 0.37
SIX3O95343 GJA3-201ENST00000241125 5211 ntAPPRIS P1 TSL 3 BASIC17.39■□□□□ 0.37
SIX3O95343 TFRC-202ENST00000392396 5032 ntAPPRIS P3 TSL 1 (best) BASIC17.39■□□□□ 0.37
SIX3O95343 AC022211.2-201ENST00000585075 2527 ntBASIC17.39■□□□□ 0.37
SIX3O95343 FAM9B-202ENST00000362066 2047 ntTSL 2 BASIC17.39■□□□□ 0.37
SIX3O95343 NOL4L-205ENST00000375678 2042 ntAPPRIS ALT2 TSL 2 BASIC17.39■□□□□ 0.37
SIX3O95343 RNH1-205ENST00000397615 2014 ntAPPRIS P1 TSL 1 (best) BASIC17.39■□□□□ 0.37
SIX3O95343 DCHS2-201ENST00000339452 5064 ntTSL 1 (best) BASIC17.39■□□□□ 0.37
SIX3O95343 APBB1IP-201ENST00000356785 1513 ntTSL 1 (best) BASIC17.39■□□□□ 0.37
SIX3O95343 KLK14-201ENST00000156499 1060 ntAPPRIS P1 TSL 1 (best) BASIC17.39■□□□□ 0.37
SIX3O95343 TMEM190-201ENST00000291934 593 ntAPPRIS P1 TSL 1 (best) BASIC17.39■□□□□ 0.37
SIX3O95343 CDC26-201ENST00000374206 872 ntAPPRIS P1 TSL 1 (best) BASIC17.39■□□□□ 0.37
SIX3O95343 TBC1D7-205ENST00000379307 1084 ntTSL 1 (best) BASIC17.39■□□□□ 0.37
SIX3O95343 BX664615.1-201ENST00000443558 458 ntBASIC17.39■□□□□ 0.37
SIX3O95343 AL365295.1-202ENST00000456100 562 ntTSL 4 BASIC17.39■□□□□ 0.37
SIX3O95343 GRP-204ENST00000529320 824 ntAPPRIS ALT2 TSL 1 (best) BASIC17.39■□□□□ 0.37
SIX3O95343 DYNLL1-205ENST00000548342 662 ntAPPRIS P1 TSL 2 BASIC17.39■□□□□ 0.37
SIX3O95343 LINC02317-201ENST00000555413 426 ntTSL 3 BASIC17.39■□□□□ 0.37
SIX3O95343 SLF2-205ENST00000609386 891 ntAPPRIS ALT2 BASIC17.39■□□□□ 0.37
SIX3O95343 SMIM29-209ENST00000636500 1186 ntTSL 1 (best) BASIC17.39■□□□□ 0.37
SIX3O95343 P2RX6-201ENST00000401443 1834 ntAPPRIS ALT2 TSL 1 (best) BASIC17.39■□□□□ 0.37
SIX3O95343 ARPC1B-201ENST00000252725 1551 ntAPPRIS P1 TSL 1 (best) BASIC17.39■□□□□ 0.37
SIX3O95343 BIRC7-202ENST00000342412 1302 ntAPPRIS ALT2 TSL 1 (best) BASIC17.39■□□□□ 0.37
SIX3O95343 FKBP3-202ENST00000396062 1346 ntAPPRIS P1 TSL 1 (best) BASIC17.39■□□□□ 0.37
SIX3O95343 TSNARE1-204ENST00000519651 2110 ntAPPRIS ALT2 TSL 1 (best) BASIC17.39■□□□□ 0.37
SIX3O95343 SNX17-210ENST00000537606 2400 ntTSL 2 BASIC17.39■□□□□ 0.37
SIX3O95343 PRRC2A-201ENST00000376007 6861 ntAPPRIS P1 TSL 1 (best) BASIC17.39■□□□□ 0.37
SIX3O95343 GBA2-201ENST00000378088 1672 ntTSL 2 BASIC17.39■□□□□ 0.37
SIX3O95343 ADGRG2-209ENST00000379876 4779 ntTSL 1 (best) BASIC17.39■□□□□ 0.37
SIX3O95343 P2RY6-207ENST00000538328 1425 ntAPPRIS P1 TSL 3 BASIC17.38■□□□□ 0.37
SIX3O95343 SFT2D3-201ENST00000310981 3735 ntAPPRIS P1 BASIC17.38■□□□□ 0.37
SIX3O95343 SIGIRR-203ENST00000431843 1720 ntAPPRIS P1 TSL 1 (best) BASIC17.38■□□□□ 0.37
SIX3O95343 RTL8B-201ENST00000391440 2026 ntAPPRIS P1 BASIC17.38■□□□□ 0.37
SIX3O95343 DHRS7B-206ENST00000579303 1479 ntAPPRIS ALT1 TSL 5 BASIC17.38■□□□□ 0.37
SIX3O95343 XKR4-203ENST00000622811 3907 ntAPPRIS P1 TSL 5 BASIC17.38■□□□□ 0.37
SIX3O95343 DIP2A-204ENST00000457905 3044 ntTSL 1 (best) BASIC17.38■□□□□ 0.37
SIX3O95343 TNXB-204ENST00000479795 2742 ntTSL 1 (best) BASIC17.38■□□□□ 0.37
SIX3O95343 WDR13-201ENST00000218056 2124 ntAPPRIS P1 TSL 1 (best) BASIC17.38■□□□□ 0.37
SIX3O95343 CYP2D7-208ENST00000614967 1504 ntTSL 5 BASIC17.38■□□□□ 0.37
SIX3O95343 FZR1-203ENST00000441788 5212 ntAPPRIS P3 TSL 1 (best) BASIC17.38■□□□□ 0.37
SIX3O95343 PRORSD1P-202ENST00000563365 2154 ntBASIC17.38■□□□□ 0.37
SIX3O95343 HAS3-205ENST00000569188 2170 ntAPPRIS P1 TSL 2 BASIC17.38■□□□□ 0.37
SIX3O95343 VKORC1-202ENST00000319788 1077 ntTSL 1 (best) BASIC17.38■□□□□ 0.37
SIX3O95343 BOLA3-202ENST00000327428 639 ntAPPRIS P1 TSL 1 (best) BASIC17.38■□□□□ 0.37
SIX3O95343 AC005521.1-201ENST00000393351 872 ntBASIC17.38■□□□□ 0.37
SIX3O95343 SMIM1-201ENST00000444870 546 ntAPPRIS P1 TSL 1 (best) BASIC17.38■□□□□ 0.37
SIX3O95343 KRT18P38-201ENST00000449496 1282 ntBASIC17.38■□□□□ 0.37
SIX3O95343 EIF2AK4-209ENST00000560648 687 ntTSL 3 BASIC17.38■□□□□ 0.37
SIX3O95343 AC011498.2-201ENST00000588798 540 ntTSL 3 BASIC17.38■□□□□ 0.37
SIX3O95343 AC239803.1-201ENST00000594189 1278 ntTSL 5 BASIC17.38■□□□□ 0.37
SIX3O95343 CYB561D2-210ENST00000607121 1004 ntTSL 2 BASIC17.38■□□□□ 0.37
SIX3O95343 LITAF-220ENST00000620789 692 ntTSL 5 BASIC17.38■□□□□ 0.37
SIX3O95343 DNM2-201ENST00000355667 3541 ntTSL 1 (best) BASIC17.38■□□□□ 0.37
SIX3O95343 FLT1-201ENST00000282397 7092 ntAPPRIS P1 TSL 1 (best) BASIC17.38■□□□□ 0.37
SIX3O95343 KCTD15-202ENST00000430256 2555 ntAPPRIS P1 TSL 2 BASIC17.38■□□□□ 0.37
SIX3O95343 TBX18-202ENST00000369663 6245 ntAPPRIS P1 TSL 1 (best) BASIC17.38■□□□□ 0.37
SIX3O95343 PSMD4-201ENST00000368881 1333 ntTSL 5 BASIC17.38■□□□□ 0.37
SIX3O95343 INF2-204ENST00000398337 1689 ntTSL 1 (best) BASIC17.38■□□□□ 0.37
SIX3O95343 SEPHS1-202ENST00000378614 2387 ntTSL 1 (best) BASIC17.38■□□□□ 0.37
SIX3O95343 AGPAT2-201ENST00000371694 1391 ntTSL 1 (best) BASIC17.38■□□□□ 0.37
SIX3O95343 KCNJ2-AS1-201ENST00000590966 2442 ntBASIC17.38■□□□□ 0.37
SIX3O95343 RBCK1-202ENST00000356286 2774 ntAPPRIS P1 TSL 1 (best) BASIC17.38■□□□□ 0.37
SIX3O95343 TTC34-201ENST00000401095 8814 ntAPPRIS ALT2 TSL 5 BASIC17.38■□□□□ 0.37
SIX3O95343 OSBP2-202ENST00000401475 2468 ntTSL 2 BASIC17.38■□□□□ 0.37
SIX3O95343 HNRNPM-217ENST00000620401 2458 ntAPPRIS ALT2 TSL 1 (best) BASIC17.38■□□□□ 0.37
SIX3O95343 QSOX1-201ENST00000367600 2519 ntAPPRIS ALT2 TSL 1 (best) BASIC17.38■□□□□ 0.37
SIX3O95343 DTX2-206ENST00000430490 2623 ntAPPRIS P3 TSL 1 (best) BASIC17.37■□□□□ 0.37
SIX3O95343 GPANK1-201ENST00000375893 1598 ntAPPRIS P1 TSL 5 BASIC17.37■□□□□ 0.37
SIX3O95343 CCDC115-201ENST00000259229 1646 ntAPPRIS P1 TSL 1 (best) BASIC17.37■□□□□ 0.37
SIX3O95343 IFIH1-202ENST00000421365 1617 ntTSL 1 (best) BASIC17.37■□□□□ 0.37
SIX3O95343 METTL9-201ENST00000358154 3256 ntAPPRIS P3 TSL 1 (best) BASIC17.37■□□□□ 0.37
SIX3O95343 EVPL-202ENST00000586740 6223 ntTSL 1 (best) BASIC17.37■□□□□ 0.37
SIX3O95343 ATXN2-227ENST00000616825 4575 ntAPPRIS ALT2 TSL 5 BASIC17.37■□□□□ 0.37
Retrieved 100 of 98,524 protein–RNA pairs in 18.6 ms