Protein–RNA interactions for Protein: O75400

PRPF40A, Pre-mRNA-processing factor 40 homolog A, humanhuman

Known RBP Predictions only

Length 957 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
PRPF40AO75400 CDX4-201ENST00000373514 1515 ntAPPRIS P1 TSL 1 (best) BASIC20.72■□□□□ 0.91
PRPF40AO75400 ASL-204ENST00000395331 1538 ntTSL 5 BASIC20.72■□□□□ 0.91
PRPF40AO75400 WDR37-206ENST00000620998 1303 ntTSL 5 BASIC20.72■□□□□ 0.91
PRPF40AO75400 BMPER-201ENST00000297161 5031 ntAPPRIS P1 TSL 1 (best) BASIC20.72■□□□□ 0.91
PRPF40AO75400 ACTG1-201ENST00000331925 1994 ntAPPRIS P1 TSL 1 (best) BASIC20.72■□□□□ 0.91
PRPF40AO75400 SLC22A18-203ENST00000380574 1755 ntAPPRIS P1 TSL 1 (best) BASIC20.72■□□□□ 0.91
PRPF40AO75400 RRM2-202ENST00000360566 3673 ntTSL 1 (best) BASIC20.72■□□□□ 0.91
PRPF40AO75400 ACP6-201ENST00000392988 1555 ntTSL 1 (best) BASIC20.72■□□□□ 0.91
PRPF40AO75400 DBX1-201ENST00000524983 1380 ntAPPRIS P1 TSL 5 BASIC20.72■□□□□ 0.91
PRPF40AO75400 MEG3-205ENST00000412736 1615 ntTSL 2 BASIC20.71■□□□□ 0.91
PRPF40AO75400 PRPF31-203ENST00000419967 2269 ntTSL 5 BASIC20.71■□□□□ 0.91
PRPF40AO75400 PFKFB3-215ENST00000536985 2094 ntTSL 2 BASIC20.71■□□□□ 0.91
PRPF40AO75400 DNAAF4-202ENST00000348518 1897 ntAPPRIS P1 TSL 5 BASIC20.71■□□□□ 0.91
PRPF40AO75400 PPP1R3B-202ENST00000519699 2334 ntAPPRIS P1 TSL 2 BASIC20.71■□□□□ 0.91
PRPF40AO75400 CCDC142-201ENST00000290418 2835 ntAPPRIS P2 TSL 2 BASIC20.71■□□□□ 0.91
PRPF40AO75400 CENPA-202ENST00000335756 1452 ntAPPRIS P1 TSL 1 (best) BASIC20.71■□□□□ 0.91
PRPF40AO75400 DAPK2-205ENST00000558069 1473 ntTSL 5 BASIC20.71■□□□□ 0.91
PRPF40AO75400 PRRT2-219ENST00000637565 1733 ntTSL 5 BASIC20.71■□□□□ 0.91
PRPF40AO75400 UNC93B2-201ENST00000285383 730 ntBASIC20.71■□□□□ 0.91
PRPF40AO75400 AC073343.2-203ENST00000366167 564 ntTSL 4 BASIC20.71■□□□□ 0.91
PRPF40AO75400 PMVK-201ENST00000368467 1280 ntAPPRIS P1 TSL 1 (best) BASIC20.71■□□□□ 0.91
PRPF40AO75400 PLEKHB2-203ENST00000404460 1167 ntTSL 2 BASIC20.71■□□□□ 0.91
PRPF40AO75400 HYAL3-203ENST00000415204 959 ntTSL 1 (best) BASIC20.71■□□□□ 0.91
PRPF40AO75400 AC136628.4-201ENST00000520758 535 ntTSL 2 BASIC20.71■□□□□ 0.91
PRPF40AO75400 RPS20-210ENST00000523936 899 ntTSL 2 BASIC20.71■□□□□ 0.91
PRPF40AO75400 TRIM27-201ENST00000377194 2686 ntTSL 1 (best) BASIC20.71■□□□□ 0.91
PRPF40AO75400 LRP8-207ENST00000465675 2670 ntTSL 2 BASIC20.71■□□□□ 0.91
PRPF40AO75400 C12orf29-201ENST00000356891 2919 ntAPPRIS P1 TSL 1 (best) BASIC20.71■□□□□ 0.91
PRPF40AO75400 GOSR1-201ENST00000225724 6039 ntAPPRIS P3 TSL 1 (best) BASIC20.71■□□□□ 0.91
PRPF40AO75400 NTRK1-202ENST00000368196 2701 ntAPPRIS ALT2 TSL 1 (best) BASIC20.71■□□□□ 0.91
PRPF40AO75400 ARF1-214ENST00000541182 2006 ntAPPRIS P1 TSL 2 BASIC20.71■□□□□ 0.91
PRPF40AO75400 SLC45A1-202ENST00000471889 2784 ntTSL 5 BASIC20.71■□□□□ 0.91
PRPF40AO75400 BAIAP2-205ENST00000435091 2129 ntAPPRIS ALT2 TSL 1 (best) BASIC20.71■□□□□ 0.91
PRPF40AO75400 WDR18-202ENST00000585809 1608 ntAPPRIS P1 TSL 1 (best) BASIC20.71■□□□□ 0.91
PRPF40AO75400 FAM227A-201ENST00000355830 2417 ntAPPRIS P5 TSL 5 BASIC20.7■□□□□ 0.91
PRPF40AO75400 MAP7-209ENST00000618822 4497 ntAPPRIS ALT2 TSL 5 BASIC20.7■□□□□ 0.91
PRPF40AO75400 GBA2-201ENST00000378088 1672 ntTSL 2 BASIC20.7■□□□□ 0.91
PRPF40AO75400 RASGRP2-206ENST00000377494 2983 ntAPPRIS ALT1 TSL 2 BASIC20.7■□□□□ 0.9
PRPF40AO75400 MAEA-202ENST00000303400 2222 ntAPPRIS P1 TSL 1 (best) BASIC20.7■□□□□ 0.9
PRPF40AO75400 SLC6A17-201ENST00000331565 6427 ntAPPRIS P1 TSL 2 BASIC20.7■□□□□ 0.9
PRPF40AO75400 TRMT44-201ENST00000389737 2799 ntAPPRIS P2 TSL 5 BASIC20.7■□□□□ 0.9
PRPF40AO75400 FBXL20-205ENST00000583610 1739 ntAPPRIS P1 TSL 2 BASIC20.7■□□□□ 0.9
PRPF40AO75400 VPS37A-201ENST00000324849 4906 ntAPPRIS P1 TSL 1 (best) BASIC20.7■□□□□ 0.9
PRPF40AO75400 TMEM127-202ENST00000432959 3099 ntAPPRIS P1 TSL 1 (best) BASIC20.7■□□□□ 0.9
PRPF40AO75400 SEPHS2-201ENST00000478753 2551 ntAPPRIS P1 BASIC20.7■□□□□ 0.9
PRPF40AO75400 FAM57B-202ENST00000380495 2313 ntAPPRIS P1 TSL 1 (best) BASIC20.7■□□□□ 0.9
PRPF40AO75400 F11R-202ENST00000368026 4835 ntAPPRIS P1 TSL 1 (best) BASIC20.7■□□□□ 0.9
PRPF40AO75400 LITAF-209ENST00000571688 2632 ntAPPRIS P1 TSL 1 (best) BASIC20.7■□□□□ 0.9
PRPF40AO75400 KRT79-201ENST00000330553 2068 ntAPPRIS P1 TSL 1 (best) BASIC20.7■□□□□ 0.9
PRPF40AO75400 PCDHB19P-201ENST00000570871 2371 ntBASIC20.7■□□□□ 0.9
PRPF40AO75400 CDHR4-201ENST00000343366 1188 ntTSL 1 (best) BASIC20.7■□□□□ 0.9
PRPF40AO75400 DAB1-202ENST00000371230 1150 ntTSL 5 BASIC20.7■□□□□ 0.9
PRPF40AO75400 UBB-203ENST00000395839 1012 ntAPPRIS P1 TSL 2 BASIC20.7■□□□□ 0.9
PRPF40AO75400 AC211429.1-201ENST00000415277 523 ntBASIC20.7■□□□□ 0.9
PRPF40AO75400 ECEL1P3-201ENST00000427961 737 ntBASIC20.7■□□□□ 0.9
PRPF40AO75400 USP46-AS1-201ENST00000503051 1048 ntTSL 3 BASIC20.7■□□□□ 0.9
PRPF40AO75400 IGHMBP2-205ENST00000539224 785 ntTSL 3 BASIC20.7■□□□□ 0.9
PRPF40AO75400 PHOSPHO2-206ENST00000616481 1252 ntAPPRIS P1 TSL 3 BASIC20.7■□□□□ 0.9
PRPF40AO75400 PHOSPHO2-208ENST00000617738 1053 ntAPPRIS P1 TSL 2 BASIC20.7■□□□□ 0.9
PRPF40AO75400 SNX16-201ENST00000345957 1853 ntAPPRIS P1 TSL 1 (best) BASIC20.7■□□□□ 0.9
PRPF40AO75400 SNTB2-201ENST00000336278 9789 ntAPPRIS P1 TSL 1 (best) BASIC20.7■□□□□ 0.9
PRPF40AO75400 SMARCB1-204ENST00000407422 1643 ntAPPRIS ALT1 TSL 1 (best) BASIC20.7■□□□□ 0.9
PRPF40AO75400 HLA-J-201ENST00000462773 1622 ntBASIC20.7■□□□□ 0.9
PRPF40AO75400 SSX2IP-210ENST00000605755 1933 ntTSL 2 BASIC20.7■□□□□ 0.9
PRPF40AO75400 HMGXB3-206ENST00000613459 5567 ntAPPRIS ALT2 TSL 5 BASIC20.7■□□□□ 0.9
PRPF40AO75400 SYT8-202ENST00000381968 1424 ntAPPRIS P2 TSL 5 BASIC20.7■□□□□ 0.9
PRPF40AO75400 KRT8P7-201ENST00000533003 1432 ntBASIC20.7■□□□□ 0.9
PRPF40AO75400 DAPK1-207ENST00000469640 5899 ntTSL 5 BASIC20.7■□□□□ 0.9
PRPF40AO75400 JADE3-204ENST00000614628 4934 ntAPPRIS P1 TSL 1 (best) BASIC20.7■□□□□ 0.9
PRPF40AO75400 TBXAS1-206ENST00000425687 2080 ntTSL 1 (best) BASIC20.69■□□□□ 0.9
PRPF40AO75400 C3orf58-201ENST00000315691 4346 ntAPPRIS P1 TSL 1 (best) BASIC20.69■□□□□ 0.9
PRPF40AO75400 PRSS16-201ENST00000230582 2716 ntAPPRIS P1 TSL 1 (best) BASIC20.69■□□□□ 0.9
PRPF40AO75400 NGFR-202ENST00000504201 1840 ntTSL 2 BASIC20.69■□□□□ 0.9
PRPF40AO75400 JKAMP-202ENST00000356057 2524 ntTSL 1 (best) BASIC20.69■□□□□ 0.9
PRPF40AO75400 ARHGAP33-201ENST00000007510 2545 ntAPPRIS ALT2 TSL 5 BASIC20.69■□□□□ 0.9
PRPF40AO75400 AGER-205ENST00000375069 1538 ntTSL 1 (best) BASIC20.69■□□□□ 0.9
PRPF40AO75400 AC002310.5-201ENST00000569360 1515 ntAPPRIS P1 TSL 2 BASIC20.69■□□□□ 0.9
PRPF40AO75400 ETV7-204ENST00000373738 1570 ntTSL 1 (best) BASIC20.69■□□□□ 0.9
PRPF40AO75400 ETV7-207ENST00000620358 1599 ntTSL 1 (best) BASIC20.69■□□□□ 0.9
PRPF40AO75400 BLOC1S5-202ENST00000397457 2684 ntAPPRIS P1 TSL 1 (best) BASIC20.69■□□□□ 0.9
PRPF40AO75400 MVK-201ENST00000228510 1956 ntAPPRIS P1 TSL 1 (best) BASIC20.69■□□□□ 0.9
PRPF40AO75400 TMEM175-222ENST00000622959 1967 ntTSL 1 (best) BASIC20.69■□□□□ 0.9
PRPF40AO75400 PNOC-201ENST00000301908 1200 ntAPPRIS P1 TSL 1 (best) BASIC20.69■□□□□ 0.9
PRPF40AO75400 GPM6B-204ENST00000398361 1033 ntTSL 2 BASIC20.69■□□□□ 0.9
PRPF40AO75400 AL162231.1-203ENST00000416454 465 ntAPPRIS ALT2 TSL 2 BASIC20.69■□□□□ 0.9
PRPF40AO75400 CA15P1-201ENST00000481698 905 ntBASIC20.69■□□□□ 0.9
PRPF40AO75400 NEURL1B-202ENST00000520919 1089 ntTSL 1 (best) BASIC20.69■□□□□ 0.9
PRPF40AO75400 GCHFR-205ENST00000559932 695 ntTSL 2 BASIC20.69■□□□□ 0.9
PRPF40AO75400 AC027796.4-201ENST00000575741 874 ntTSL 5 BASIC20.69■□□□□ 0.9
PRPF40AO75400 CIRBP-217ENST00000588230 1013 ntTSL 5 BASIC20.69■□□□□ 0.9
PRPF40AO75400 TPSB2-201ENST00000606293 1165 ntAPPRIS ALT2 TSL 1 (best) BASIC20.69■□□□□ 0.9
PRPF40AO75400 RRAGD-202ENST00000369415 4900 ntAPPRIS P1 TSL 1 (best) BASIC20.69■□□□□ 0.9
PRPF40AO75400 FSCN1-201ENST00000382361 2777 ntAPPRIS P1 TSL 1 (best) BASIC20.69■□□□□ 0.9
PRPF40AO75400 INF2-204ENST00000398337 1689 ntTSL 1 (best) BASIC20.69■□□□□ 0.9
PRPF40AO75400 C15orf38-AP3S2-201ENST00000398333 2439 ntAPPRIS P1 TSL 2 BASIC20.69■□□□□ 0.9
PRPF40AO75400 TMEM59L-205ENST00000600490 1717 ntAPPRIS P1 TSL 5 BASIC20.69■□□□□ 0.9
PRPF40AO75400 ASL-201ENST00000304874 2143 ntAPPRIS P1 TSL 1 (best) BASIC20.69■□□□□ 0.9
PRPF40AO75400 RENBP-202ENST00000393700 1388 ntAPPRIS P1 TSL 1 (best) BASIC20.69■□□□□ 0.9
PRPF40AO75400 PML-206ENST00000395135 2199 ntAPPRIS ALT2 TSL 1 (best) BASIC20.69■□□□□ 0.9
PRPF40AO75400 LMF1-201ENST00000262301 2621 ntAPPRIS P1 TSL 5 BASIC20.69■□□□□ 0.9
Retrieved 100 of 98,524 protein–RNA pairs in 44.8 ms