Protein–RNA interactions for Protein: O75351

VPS4B, Vacuolar protein sorting-associated protein 4B, humanhuman

Predictions only

Length 444 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
VPS4BO75351 TRIM73-203ENST00000437796 1169 ntAPPRIS P2 TSL 1 (best) BASIC17.47■□□□□ 0.39
VPS4BO75351 AL445472.1-201ENST00000452532 1007 ntTSL 2 BASIC17.47■□□□□ 0.39
VPS4BO75351 TRMT112-203ENST00000535750 823 ntTSL 2 BASIC17.47■□□□□ 0.39
VPS4BO75351 AL132780.2-201ENST00000557615 1021 ntTSL 3 BASIC17.47■□□□□ 0.39
VPS4BO75351 MRPL46-202ENST00000558531 1002 ntTSL 2 BASIC17.47■□□□□ 0.39
VPS4BO75351 ZNF444P1-201ENST00000559497 298 ntBASIC17.47■□□□□ 0.39
VPS4BO75351 ETFA-216ENST00000560726 942 ntTSL 3 BASIC17.47■□□□□ 0.39
VPS4BO75351 AC005606.2-201ENST00000564438 614 ntTSL 2 BASIC17.47■□□□□ 0.39
VPS4BO75351 ATP5D-207ENST00000591660 637 ntAPPRIS P1 TSL 3 BASIC17.47■□□□□ 0.39
VPS4BO75351 AP2S1-204ENST00000597020 707 ntTSL 1 (best) BASIC17.47■□□□□ 0.39
VPS4BO75351 TMEM65-201ENST00000297632 9029 ntAPPRIS P1 TSL 1 (best) BASIC17.47■□□□□ 0.39
VPS4BO75351 EMD-202ENST00000369842 1379 ntAPPRIS P1 TSL 1 (best) BASIC17.47■□□□□ 0.39
VPS4BO75351 SPAG4-201ENST00000374273 1453 ntAPPRIS P1 TSL 1 (best) BASIC17.47■□□□□ 0.39
VPS4BO75351 PDE9A-206ENST00000380328 1875 ntTSL 1 (best) BASIC17.47■□□□□ 0.39
VPS4BO75351 SLC22A11-202ENST00000377581 1975 ntTSL 5 BASIC17.47■□□□□ 0.39
VPS4BO75351 LEMD2-214ENST00000614475 2883 ntAPPRIS P1 TSL 5 BASIC17.47■□□□□ 0.39
VPS4BO75351 GGA1-203ENST00000343632 3159 ntAPPRIS P1 TSL 1 (best) BASIC17.47■□□□□ 0.39
VPS4BO75351 KANK1-204ENST00000382293 5249 ntTSL 1 (best) BASIC17.47■□□□□ 0.39
VPS4BO75351 NYX-201ENST00000342595 2713 ntAPPRIS P1 TSL 1 (best) BASIC17.47■□□□□ 0.39
VPS4BO75351 OPN5-204ENST00000489301 1931 ntAPPRIS ALT2 TSL 5 BASIC17.47■□□□□ 0.39
VPS4BO75351 RUNX2-201ENST00000359524 5390 ntTSL 1 (best) BASIC17.47■□□□□ 0.39
VPS4BO75351 PSRC1-204ENST00000369909 1742 ntAPPRIS P3 TSL 1 (best) BASIC17.47■□□□□ 0.39
VPS4BO75351 TRAF3IP1-201ENST00000373327 4279 ntAPPRIS P3 TSL 1 (best) BASIC17.47■□□□□ 0.39
VPS4BO75351 AC022898.2-201ENST00000616822 1312 ntBASIC17.47■□□□□ 0.39
VPS4BO75351 RNF217-211ENST00000560949 5145 ntAPPRIS ALT2 TSL 5 BASIC17.46■□□□□ 0.39
VPS4BO75351 DIABLO-206ENST00000443649 2250 ntAPPRIS P1 TSL 2 BASIC17.46■□□□□ 0.39
VPS4BO75351 PRKAG1-206ENST00000548065 2071 ntAPPRIS P1 TSL 1 (best) BASIC17.46■□□□□ 0.39
VPS4BO75351 ADGRG2-208ENST00000379873 4698 ntTSL 1 (best) BASIC17.46■□□□□ 0.39
VPS4BO75351 GCDH-201ENST00000222214 1956 ntAPPRIS P1 TSL 1 (best) BASIC17.46■□□□□ 0.39
VPS4BO75351 NAT9-201ENST00000357814 1875 ntTSL 1 (best) BASIC17.46■□□□□ 0.39
VPS4BO75351 ATP1B1-201ENST00000367815 1883 ntAPPRIS P1 TSL 1 (best) BASIC17.46■□□□□ 0.39
VPS4BO75351 VRK3-225ENST00000601912 1668 ntAPPRIS ALT2 TSL 5 BASIC17.46■□□□□ 0.39
VPS4BO75351 NDFIP1-201ENST00000253814 3851 ntAPPRIS P1 TSL 1 (best) BASIC17.46■□□□□ 0.39
VPS4BO75351 OGFOD2-205ENST00000454694 1488 ntTSL 1 (best) BASIC17.46■□□□□ 0.39
VPS4BO75351 RCC1-202ENST00000373832 2424 ntAPPRIS P1 TSL 1 (best) BASIC17.46■□□□□ 0.39
VPS4BO75351 GRIN3B-201ENST00000234389 3281 ntAPPRIS P1 TSL 1 (best) BASIC17.46■□□□□ 0.39
VPS4BO75351 KMT5A-201ENST00000330479 3069 ntAPPRIS ALT2 TSL 1 (best) BASIC17.46■□□□□ 0.39
VPS4BO75351 CFL1-201ENST00000308162 1234 ntAPPRIS P1 TSL 1 (best) BASIC17.46■□□□□ 0.39
VPS4BO75351 CD1E-211ENST00000368166 1271 ntTSL 1 (best) BASIC17.46■□□□□ 0.39
VPS4BO75351 MED4-202ENST00000378586 931 ntAPPRIS ALT2 TSL 2 BASIC17.46■□□□□ 0.39
VPS4BO75351 ROMO1-205ENST00000397416 288 ntAPPRIS P1 TSL 3 BASIC17.46■□□□□ 0.39
VPS4BO75351 SMYD3-204ENST00000403792 1209 ntTSL 1 (best) BASIC17.46■□□□□ 0.39
VPS4BO75351 CT47A4-201ENST00000415858 1298 ntAPPRIS P1 TSL 1 (best) BASIC17.46■□□□□ 0.39
VPS4BO75351 CT47A9-201ENST00000417256 1298 ntAPPRIS P1 TSL 1 (best) BASIC17.46■□□□□ 0.39
VPS4BO75351 CT47A6-201ENST00000419194 1298 ntAPPRIS P1 TSL 5 BASIC17.46■□□□□ 0.39
VPS4BO75351 AC012618.3-203ENST00000426044 917 ntTSL 2 BASIC17.46■□□□□ 0.39
VPS4BO75351 CT47A10-201ENST00000430448 1298 ntAPPRIS P1 TSL 1 (best) BASIC17.46■□□□□ 0.39
VPS4BO75351 GRAMD4P1-201ENST00000435181 1110 ntBASIC17.46■□□□□ 0.39
VPS4BO75351 AC074183.1-201ENST00000439105 782 ntTSL 5 BASIC17.46■□□□□ 0.39
VPS4BO75351 CT47A5-201ENST00000439466 1298 ntAPPRIS P1 TSL 1 (best) BASIC17.46■□□□□ 0.39
VPS4BO75351 CT47A3-201ENST00000441330 1298 ntAPPRIS P1 TSL 1 (best) BASIC17.46■□□□□ 0.39
VPS4BO75351 AC005091.1-201ENST00000441955 1190 ntTSL 3 BASIC17.46■□□□□ 0.39
VPS4BO75351 AC112907.2-201ENST00000448639 330 ntBASIC17.46■□□□□ 0.39
VPS4BO75351 CT47A8-201ENST00000457977 1298 ntAPPRIS P1 TSL 1 (best) BASIC17.46■□□□□ 0.39
VPS4BO75351 CT47A2-201ENST00000458218 1298 ntAPPRIS P1 TSL 1 (best) BASIC17.46■□□□□ 0.39
VPS4BO75351 FAM104A-205ENST00000581110 512 ntTSL 2 BASIC17.46■□□□□ 0.39
VPS4BO75351 SMN2-213ENST00000614240 804 ntAPPRIS ALT2 TSL 5 BASIC17.46■□□□□ 0.39
VPS4BO75351 SPACA6-213ENST00000637797 1073 ntAPPRIS P1 TSL 1 (best) BASIC17.46■□□□□ 0.39
VPS4BO75351 AC013275.1-201ENST00000413602 2019 ntTSL 1 (best) BASIC17.46■□□□□ 0.39
VPS4BO75351 RNF222-201ENST00000344001 2786 ntAPPRIS P1 BASIC17.46■□□□□ 0.39
VPS4BO75351 A4GALT-202ENST00000381278 1935 ntAPPRIS P1 TSL 5 BASIC17.46■□□□□ 0.39
VPS4BO75351 WDSUB1-203ENST00000392796 1812 ntAPPRIS P1 TSL 2 BASIC17.46■□□□□ 0.39
VPS4BO75351 LRP4-201ENST00000378623 8076 ntAPPRIS P1 TSL 1 (best) BASIC17.46■□□□□ 0.39
VPS4BO75351 PTP4A1-201ENST00000370651 5088 ntAPPRIS P1 TSL 1 (best) BASIC17.46■□□□□ 0.39
VPS4BO75351 AC108860.2-201ENST00000562760 2183 ntBASIC17.46■□□□□ 0.39
VPS4BO75351 NOMO3-201ENST00000263012 3911 ntAPPRIS ALT2 TSL 1 (best) BASIC17.46■□□□□ 0.39
VPS4BO75351 GSTZ1-204ENST00000393734 1424 ntTSL 5 BASIC17.46■□□□□ 0.39
VPS4BO75351 NOS3-210ENST00000484524 2537 ntTSL 1 (best) BASIC17.46■□□□□ 0.38
VPS4BO75351 STX17-205ENST00000525640 2523 ntAPPRIS P1 TSL 2 BASIC17.46■□□□□ 0.38
VPS4BO75351 MAPT-205ENST00000351559 5811 ntAPPRIS ALT2 TSL 1 (best) BASIC17.46■□□□□ 0.38
VPS4BO75351 SEPT2-245ENST00000616972 3446 ntTSL 2 BASIC17.46■□□□□ 0.38
VPS4BO75351 SEMA3B-202ENST00000418576 1765 ntTSL 2 BASIC17.45■□□□□ 0.38
VPS4BO75351 FYTTD1-205ENST00000424384 1758 ntTSL 2 BASIC17.45■□□□□ 0.38
VPS4BO75351 STRN4-201ENST00000263280 3210 ntAPPRIS P3 TSL 1 (best) BASIC17.45■□□□□ 0.38
VPS4BO75351 SPNS1-202ENST00000323081 2102 ntTSL 2 BASIC17.45■□□□□ 0.38
VPS4BO75351 ASCC2-223ENST00000542393 2594 ntTSL 2 BASIC17.45■□□□□ 0.38
VPS4BO75351 FCGRT-202ENST00000426395 1559 ntAPPRIS P1 TSL 1 (best) BASIC17.45■□□□□ 0.38
VPS4BO75351 CFC1-202ENST00000615342 1554 ntTSL 5 BASIC17.45■□□□□ 0.38
VPS4BO75351 CFC1B-202ENST00000619050 1554 ntTSL 5 BASIC17.45■□□□□ 0.38
VPS4BO75351 AL138688.1-201ENST00000624851 1594 ntBASIC17.45■□□□□ 0.38
VPS4BO75351 ZBTB4-202ENST00000380599 5866 ntAPPRIS P1 TSL 1 (best) BASIC17.45■□□□□ 0.38
VPS4BO75351 SSX2IP-210ENST00000605755 1933 ntTSL 2 BASIC17.45■□□□□ 0.38
VPS4BO75351 MYBPH-201ENST00000255416 1805 ntAPPRIS P1 TSL 1 (best) BASIC17.45■□□□□ 0.38
VPS4BO75351 FDXR-205ENST00000544854 1827 ntTSL 2 BASIC17.45■□□□□ 0.38
VPS4BO75351 WNT9B-201ENST00000290015 1376 ntAPPRIS P1 TSL 1 (best) BASIC17.45■□□□□ 0.38
VPS4BO75351 CSNK2A2-201ENST00000262506 1701 ntAPPRIS P1 TSL 1 (best) BASIC17.45■□□□□ 0.38
VPS4BO75351 HOXA-AS3-205ENST00000524304 2063 ntTSL 2 BASIC17.45■□□□□ 0.38
VPS4BO75351 PAFAH1B3-201ENST00000262890 1003 ntAPPRIS P1 TSL 1 (best) BASIC17.45■□□□□ 0.38
VPS4BO75351 TMEM88-201ENST00000301599 875 ntAPPRIS P1 TSL 1 (best) BASIC17.45■□□□□ 0.38
VPS4BO75351 ILF2-202ENST00000368681 726 ntTSL 2 BASIC17.45■□□□□ 0.38
VPS4BO75351 RPUSD3-201ENST00000383820 1225 ntAPPRIS P1 TSL 1 (best) BASIC17.45■□□□□ 0.38
VPS4BO75351 FXN-203ENST00000396366 922 ntTSL 2 BASIC17.45■□□□□ 0.38
VPS4BO75351 C21orf91-202ENST00000400558 1090 ntTSL 1 (best) BASIC17.45■□□□□ 0.38
VPS4BO75351 ZNF706-206ENST00000519744 785 ntTSL 3 BASIC17.45■□□□□ 0.38
VPS4BO75351 PRELID1P1-202ENST00000567272 903 ntBASIC17.45■□□□□ 0.38
VPS4BO75351 AC020558.2-201ENST00000582325 795 ntTSL 3 BASIC17.45■□□□□ 0.38
VPS4BO75351 FXYD7-203ENST00000586063 456 ntAPPRIS ALT2 TSL 3 BASIC17.45■□□□□ 0.38
VPS4BO75351 GFOD2-207ENST00000602855 819 ntTSL 3 BASIC17.45■□□□□ 0.38
VPS4BO75351 ANKRD36-207ENST00000639293 1168 ntAPPRIS ALT2 TSL 5 BASIC17.45■□□□□ 0.38
VPS4BO75351 LRRFIP2-209ENST00000440230 1989 ntTSL 5 BASIC17.45■□□□□ 0.38
Retrieved 100 of 98,524 protein–RNA pairs in 59.1 ms