Protein–RNA interactions for Protein: O60391

GRIN3B, Glutamate receptor ionotropic, NMDA 3B, humanhuman

Predictions only

Length 1,043 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
GRIN3BO60391 UPP1-201ENST00000331803 1932 ntAPPRIS P1 TSL 1 (best) BASIC21.53■■□□□ 1.04
GRIN3BO60391 TCAIM-203ENST00000396078 2178 ntTSL 1 (best) BASIC21.53■■□□□ 1.04
GRIN3BO60391 VAMP4-202ENST00000367740 1193 ntAPPRIS ALT1 TSL 1 (best) BASIC21.53■■□□□ 1.04
GRIN3BO60391 AC108047.1-201ENST00000457407 404 ntTSL 2 BASIC21.53■■□□□ 1.04
GRIN3BO60391 GMFG-207ENST00000598034 1028 ntAPPRIS ALT1 TSL 1 (best) BASIC21.53■■□□□ 1.04
GRIN3BO60391 MTX1-207ENST00000609421 1085 ntAPPRIS P1 TSL 1 (best) BASIC21.53■■□□□ 1.04
GRIN3BO60391 EBF1-202ENST00000380654 2345 ntTSL 1 (best) BASIC21.53■■□□□ 1.04
GRIN3BO60391 SLC25A22-228ENST00000628067 2692 ntAPPRIS P1 TSL 1 (best) BASIC21.53■■□□□ 1.04
GRIN3BO60391 PLEKHG2-202ENST00000409797 2205 ntAPPRIS ALT2 TSL 2 BASIC21.53■■□□□ 1.04
GRIN3BO60391 NOTCH2NL-201ENST00000362074 1874 ntAPPRIS P2 TSL 1 (best) BASIC21.53■■□□□ 1.04
GRIN3BO60391 FAM189B-201ENST00000350210 2379 ntTSL 1 (best) BASIC21.53■■□□□ 1.04
GRIN3BO60391 ZDHHC14-203ENST00000359775 7380 ntAPPRIS P1 TSL 1 (best) BASIC21.53■■□□□ 1.04
GRIN3BO60391 FAM120A-201ENST00000277165 5118 ntAPPRIS P1 TSL 1 (best) BASIC21.53■■□□□ 1.04
GRIN3BO60391 FBP1-201ENST00000375326 1462 ntAPPRIS P1 TSL 1 (best) BASIC21.52■■□□□ 1.04
GRIN3BO60391 AC087500.1-202ENST00000571689 1715 ntTSL 1 (best) BASIC21.52■■□□□ 1.04
GRIN3BO60391 AEBP2-204ENST00000398864 5099 ntAPPRIS P4 TSL 1 (best) BASIC21.52■■□□□ 1.04
GRIN3BO60391 PIGF-201ENST00000281382 1372 ntAPPRIS P1 TSL 1 (best) BASIC21.52■■□□□ 1.04
GRIN3BO60391 CORO1B-201ENST00000341356 1881 ntAPPRIS P1 TSL 1 (best) BASIC21.52■■□□□ 1.04
GRIN3BO60391 COPS7A-222ENST00000626119 1768 ntTSL 3 BASIC21.52■■□□□ 1.04
GRIN3BO60391 ZSCAN2-203ENST00000334141 993 ntTSL 1 (best) BASIC21.52■■□□□ 1.04
GRIN3BO60391 TNNT3-204ENST00000381558 1258 ntAPPRIS ALT2 TSL 5 BASIC21.52■■□□□ 1.04
GRIN3BO60391 ADM2-201ENST00000395737 535 ntAPPRIS P1 TSL 1 (best) BASIC21.52■■□□□ 1.04
GRIN3BO60391 AL365255.1-202ENST00000413887 363 ntTSL 5 BASIC21.52■■□□□ 1.04
GRIN3BO60391 FALEC-201ENST00000416894 566 ntTSL 3 BASIC21.52■■□□□ 1.04
GRIN3BO60391 AC124057.1-201ENST00000433035 404 ntTSL 5 BASIC21.52■■□□□ 1.04
GRIN3BO60391 SLC22A18-206ENST00000449793 1225 ntTSL 5 BASIC21.52■■□□□ 1.04
GRIN3BO60391 DNAJC19-208ENST00000486355 828 ntTSL 2 BASIC21.52■■□□□ 1.04
GRIN3BO60391 DNAJC19-209ENST00000491873 769 ntTSL 2 BASIC21.52■■□□□ 1.04
GRIN3BO60391 SNCA-209ENST00000506244 570 ntAPPRIS P1 TSL 2 BASIC21.52■■□□□ 1.04
GRIN3BO60391 RPL10P19-202ENST00000520582 722 ntTSL 3 BASIC21.52■■□□□ 1.04
GRIN3BO60391 AC069120.2-201ENST00000524091 540 ntBASIC21.52■■□□□ 1.04
GRIN3BO60391 AP003068.1-201ENST00000528887 544 ntTSL 4 BASIC21.52■■□□□ 1.04
GRIN3BO60391 WASHC3-213ENST00000545679 865 ntTSL 2 BASIC21.52■■□□□ 1.04
GRIN3BO60391 IFI27-210ENST00000616764 716 ntAPPRIS P2 TSL 2 BASIC21.52■■□□□ 1.04
GRIN3BO60391 HIST1H2AK-201ENST00000618958 393 ntAPPRIS P1 BASIC21.52■■□□□ 1.04
GRIN3BO60391 IFI27-213ENST00000620066 719 ntAPPRIS ALT2 TSL 1 (best) BASIC21.52■■□□□ 1.04
GRIN3BO60391 DPH1-201ENST00000263083 2221 ntAPPRIS P2 TSL 1 (best) BASIC21.52■■□□□ 1.04
GRIN3BO60391 WWOX-203ENST00000406884 1701 ntTSL 1 (best) BASIC21.52■■□□□ 1.03
GRIN3BO60391 SH3BP5-203ENST00000408919 1880 ntTSL 1 (best) BASIC21.52■■□□□ 1.03
GRIN3BO60391 PNCK-203ENST00000370145 1455 ntTSL 2 BASIC21.52■■□□□ 1.03
GRIN3BO60391 FGFR1-214ENST00000447712 5900 ntAPPRIS P3 TSL 1 (best) BASIC21.51■■□□□ 1.03
GRIN3BO60391 BYSL-201ENST00000230340 2029 ntAPPRIS P1 TSL 1 (best) BASIC21.51■■□□□ 1.03
GRIN3BO60391 NSUN2-206ENST00000506139 2619 ntAPPRIS ALT2 TSL 2 BASIC21.51■■□□□ 1.03
GRIN3BO60391 AC141586.3-201ENST00000562166 1838 ntBASIC21.51■■□□□ 1.03
GRIN3BO60391 AIP-201ENST00000279146 1221 ntAPPRIS P1 TSL 1 (best) BASIC21.51■■□□□ 1.03
GRIN3BO60391 ASB16-201ENST00000293414 2139 ntAPPRIS P1 TSL 1 (best) BASIC21.51■■□□□ 1.03
GRIN3BO60391 LSM1-201ENST00000311351 1147 ntAPPRIS P1 TSL 1 (best) BASIC21.51■■□□□ 1.03
GRIN3BO60391 SNCG-201ENST00000348795 684 ntTSL 2 BASIC21.51■■□□□ 1.03
GRIN3BO60391 PLAC9P1-202ENST00000433290 400 ntTSL 2 BASIC21.51■■□□□ 1.03
GRIN3BO60391 LINC01818-201ENST00000437118 368 ntTSL 2 BASIC21.51■■□□□ 1.03
GRIN3BO60391 AL513480.1-201ENST00000451731 511 ntBASIC21.51■■□□□ 1.03
GRIN3BO60391 PSEN2-206ENST00000472139 1163 ntTSL 5 BASIC21.51■■□□□ 1.03
GRIN3BO60391 UBE2H-204ENST00000473814 535 ntTSL 1 (best) BASIC21.51■■□□□ 1.03
GRIN3BO60391 INS-205ENST00000512523 297 ntTSL 1 (best) BASIC21.51■■□□□ 1.03
GRIN3BO60391 RPL28-209ENST00000560055 670 ntTSL 3 BASIC21.51■■□□□ 1.03
GRIN3BO60391 ELOF1-205ENST00000589171 743 ntTSL 3 BASIC21.51■■□□□ 1.03
GRIN3BO60391 AC017083.2-201ENST00000608069 979 ntBASIC21.51■■□□□ 1.03
GRIN3BO60391 RBM14-202ENST00000393979 1426 ntTSL 1 (best) BASIC21.51■■□□□ 1.03
GRIN3BO60391 AC008677.1-201ENST00000519230 1561 ntBASIC21.51■■□□□ 1.03
GRIN3BO60391 SIGIRR-203ENST00000431843 1720 ntAPPRIS P1 TSL 1 (best) BASIC21.51■■□□□ 1.03
GRIN3BO60391 SH3BP2-202ENST00000435136 2318 ntAPPRIS P3 TSL 2 BASIC21.51■■□□□ 1.03
GRIN3BO60391 SRSF4-201ENST00000373795 2387 ntAPPRIS P2 TSL 1 (best) BASIC21.51■■□□□ 1.03
GRIN3BO60391 NGEF-202ENST00000373552 2286 ntAPPRIS P1 TSL 2 BASIC21.5■■□□□ 1.03
GRIN3BO60391 IFRD2-202ENST00000417626 2109 ntTSL 1 (best) BASIC21.5■■□□□ 1.03
GRIN3BO60391 LETM1-201ENST00000302787 5462 ntAPPRIS P1 TSL 1 (best) BASIC21.5■■□□□ 1.03
GRIN3BO60391 ESR2-201ENST00000267525 1518 ntTSL 1 (best) BASIC21.5■■□□□ 1.03
GRIN3BO60391 TDG-209ENST00000544861 1387 ntTSL 2 BASIC21.5■■□□□ 1.03
GRIN3BO60391 RNH1-204ENST00000397614 1864 ntAPPRIS P1 TSL 5 BASIC21.5■■□□□ 1.03
GRIN3BO60391 PITPNB-205ENST00000455418 2963 ntAPPRIS ALT1 TSL 5 BASIC21.5■■□□□ 1.03
GRIN3BO60391 BCS1L-202ENST00000392109 1583 ntAPPRIS P1 TSL 1 (best) BASIC21.5■■□□□ 1.03
GRIN3BO60391 BCS1L-204ENST00000392111 1584 ntAPPRIS P1 TSL 1 (best) BASIC21.5■■□□□ 1.03
GRIN3BO60391 LIM2-201ENST00000221973 983 ntTSL 1 (best) BASIC21.5■■□□□ 1.03
GRIN3BO60391 MECP2-203ENST00000407218 1174 ntTSL 5 BASIC21.5■■□□□ 1.03
GRIN3BO60391 AL645941.1-201ENST00000415875 338 ntTSL 3 BASIC21.5■■□□□ 1.03
GRIN3BO60391 AL160408.2-201ENST00000436039 693 ntTSL 3 BASIC21.5■■□□□ 1.03
GRIN3BO60391 Z98749.2-207ENST00000443658 679 ntTSL 2 BASIC21.5■■□□□ 1.03
GRIN3BO60391 AC091133.3-201ENST00000504865 432 ntTSL 5 BASIC21.5■■□□□ 1.03
GRIN3BO60391 AC083973.1-206ENST00000518213 815 ntTSL 3 BASIC21.5■■□□□ 1.03
GRIN3BO60391 MTFR1L-218ENST00000526894 733 ntTSL 4 BASIC21.5■■□□□ 1.03
GRIN3BO60391 ZNF576-206ENST00000533118 867 ntAPPRIS P1 TSL 2 BASIC21.5■■□□□ 1.03
GRIN3BO60391 HILS1-202ENST00000545329 423 ntBASIC21.5■■□□□ 1.03
GRIN3BO60391 AP000275.2-202ENST00000553001 929 ntTSL 5 BASIC21.5■■□□□ 1.03
GRIN3BO60391 AC090515.4-201ENST00000558042 450 ntTSL 3 BASIC21.5■■□□□ 1.03
GRIN3BO60391 SIGLEC7-205ENST00000600577 616 ntTSL 1 (best) BASIC21.5■■□□□ 1.03
GRIN3BO60391 AC004233.3-201ENST00000607794 1269 ntBASIC21.5■■□□□ 1.03
GRIN3BO60391 TMEM178A-206ENST00000618232 1286 ntTSL 5 BASIC21.5■■□□□ 1.03
GRIN3BO60391 SNX12-206ENST00000622259 661 ntTSL 5 BASIC21.5■■□□□ 1.03
GRIN3BO60391 UNC5C-202ENST00000504962 1789 ntTSL 2 BASIC21.5■■□□□ 1.03
GRIN3BO60391 RBM45-207ENST00000616198 1788 ntAPPRIS ALT1 TSL 1 (best) BASIC21.5■■□□□ 1.03
GRIN3BO60391 ALDOA-221ENST00000566897 2448 ntAPPRIS P2 TSL 2 BASIC21.5■■□□□ 1.03
GRIN3BO60391 DVL3-203ENST00000431765 2294 ntTSL 5 BASIC21.5■■□□□ 1.03
GRIN3BO60391 KIF25-203ENST00000443060 1613 ntAPPRIS P1 TSL 5 BASIC21.5■■□□□ 1.03
GRIN3BO60391 TNFRSF14-AS1-205ENST00000449660 1629 ntTSL 2 BASIC21.5■■□□□ 1.03
GRIN3BO60391 IMPDH1-214ENST00000496200 2283 ntTSL 2 BASIC21.5■■□□□ 1.03
GRIN3BO60391 SHB-201ENST00000377707 2783 ntAPPRIS P1 TSL 1 (best) BASIC21.5■■□□□ 1.03
GRIN3BO60391 CHST8-203ENST00000438847 2133 ntAPPRIS P1 TSL 1 (best) BASIC21.5■■□□□ 1.03
GRIN3BO60391 FUBP3-201ENST00000319725 3124 ntAPPRIS P1 TSL 1 (best) BASIC21.5■■□□□ 1.03
GRIN3BO60391 PCDHAC2-203ENST00000615316 3011 ntBASIC21.5■■□□□ 1.03
GRIN3BO60391 KCNJ10-208ENST00000639408 1546 ntTSL 5 BASIC21.5■■□□□ 1.03
GRIN3BO60391 EXO5-202ENST00000358527 1892 ntAPPRIS P1 TSL 1 (best) BASIC21.49■■□□□ 1.03
Retrieved 100 of 98,524 protein–RNA pairs in 40.2 ms