Protein–RNA interactions for Protein: A6NIU2

LINC01549, Putative uncharacterized protein encoded by LINC01549, humanhuman

Predictions only

Length 74 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
LINC01549A6NIU2 MAT2A-202ENST00000409017 1927 ntTSL 1 (best) BASIC12.68□□□□□ -0.38
LINC01549A6NIU2 RPS6KB1-204ENST00000443572 1913 ntTSL 2 BASIC12.68□□□□□ -0.38
LINC01549A6NIU2 VRK1-201ENST00000216639 1745 ntAPPRIS P1 TSL 1 (best) BASIC12.68□□□□□ -0.38
LINC01549A6NIU2 RDH8-203ENST00000591589 1715 ntAPPRIS P1 TSL 1 (best) BASIC12.68□□□□□ -0.38
LINC01549A6NIU2 WIPF2-210ENST00000585043 2693 ntAPPRIS P2 TSL 1 (best) BASIC12.68□□□□□ -0.38
LINC01549A6NIU2 TTLL10-202ENST00000379289 2259 ntAPPRIS P1 TSL 2 BASIC12.68□□□□□ -0.38
LINC01549A6NIU2 FAM76B-201ENST00000358780 3952 ntAPPRIS P3 TSL 1 (best) BASIC12.68□□□□□ -0.38
LINC01549A6NIU2 ESPN-202ENST00000416731 1338 ntTSL 5 BASIC12.68□□□□□ -0.38
LINC01549A6NIU2 LINC00304-203ENST00000565008 1864 ntBASIC12.68□□□□□ -0.38
LINC01549A6NIU2 SLC26A11-212ENST00000572725 1862 ntAPPRIS P1 TSL 1 (best) BASIC12.68□□□□□ -0.38
LINC01549A6NIU2 KHK-202ENST00000260599 2411 ntAPPRIS ALT1 TSL 1 (best) BASIC12.68□□□□□ -0.38
LINC01549A6NIU2 VRK3-225ENST00000601912 1668 ntAPPRIS ALT2 TSL 5 BASIC12.68□□□□□ -0.38
LINC01549A6NIU2 SPI1-201ENST00000227163 1168 ntAPPRIS ALT1 TSL 2 BASIC12.68□□□□□ -0.38
LINC01549A6NIU2 GPSM1-203ENST00000392944 1111 ntTSL 3 BASIC12.68□□□□□ -0.38
LINC01549A6NIU2 AC079145.1-201ENST00000416575 541 ntTSL 2 BASIC12.68□□□□□ -0.38
LINC01549A6NIU2 AC068831.2-201ENST00000448987 367 ntTSL 2 BASIC12.68□□□□□ -0.38
LINC01549A6NIU2 LGR4-203ENST00000480977 492 ntTSL 2 BASIC12.68□□□□□ -0.38
LINC01549A6NIU2 PYCARD-AS1-201ENST00000561916 1095 ntTSL 2 BASIC12.68□□□□□ -0.38
LINC01549A6NIU2 CDIPT-204ENST00000563415 1047 ntTSL 3 BASIC12.68□□□□□ -0.38
LINC01549A6NIU2 AIPL1-206ENST00000571740 1202 ntAPPRIS ALT2 TSL 1 (best) BASIC12.68□□□□□ -0.38
LINC01549A6NIU2 AC006504.5-207ENST00000586220 487 ntTSL 2 BASIC12.68□□□□□ -0.38
LINC01549A6NIU2 AC012313.6-201ENST00000599889 790 ntTSL 3 BASIC12.68□□□□□ -0.38
LINC01549A6NIU2 AL158152.2-201ENST00000602703 235 ntTSL 3 BASIC12.68□□□□□ -0.38
LINC01549A6NIU2 SQSTM1-216ENST00000626660 274 ntTSL 5 BASIC12.68□□□□□ -0.38
LINC01549A6NIU2 SPON1-201ENST00000576479 4837 ntAPPRIS P1 TSL 1 (best) BASIC12.68□□□□□ -0.38
LINC01549A6NIU2 ASL-201ENST00000304874 2143 ntAPPRIS P1 TSL 1 (best) BASIC12.68□□□□□ -0.38
LINC01549A6NIU2 DYSF-207ENST00000409762 6727 ntAPPRIS ALT2 TSL 1 (best) BASIC12.68□□□□□ -0.38
LINC01549A6NIU2 DYSF-211ENST00000429174 6739 ntAPPRIS ALT2 TSL 1 (best) BASIC12.68□□□□□ -0.38
LINC01549A6NIU2 NACAD-202ENST00000490531 4780 ntAPPRIS P1 TSL 5 BASIC12.68□□□□□ -0.38
LINC01549A6NIU2 PIAS4-201ENST00000262971 3159 ntAPPRIS P1 TSL 1 (best) BASIC12.68□□□□□ -0.38
LINC01549A6NIU2 RAPGEFL1-212ENST00000620260 3855 ntAPPRIS P1 TSL 1 (best) BASIC12.68□□□□□ -0.38
LINC01549A6NIU2 UROS-202ENST00000368778 1556 ntTSL 2 BASIC12.68□□□□□ -0.38
LINC01549A6NIU2 PLEKHG6-203ENST00000396988 2963 ntAPPRIS P1 TSL 2 BASIC12.68□□□□□ -0.38
LINC01549A6NIU2 SLC45A1-202ENST00000471889 2784 ntTSL 5 BASIC12.68□□□□□ -0.38
LINC01549A6NIU2 ARHGAP39-201ENST00000276826 4697 ntAPPRIS ALT2 TSL 2 BASIC12.68□□□□□ -0.38
LINC01549A6NIU2 PDE3A-201ENST00000359062 7576 ntAPPRIS P1 TSL 1 (best) BASIC12.68□□□□□ -0.38
LINC01549A6NIU2 SCAND1-203ENST00000615116 1371 ntAPPRIS P1 TSL 5 BASIC12.68□□□□□ -0.38
LINC01549A6NIU2 DMTN-223ENST00000523782 2235 ntAPPRIS P1 TSL 5 BASIC12.68□□□□□ -0.38
LINC01549A6NIU2 C18orf25-203ENST00000615052 5462 ntAPPRIS P1 TSL 5 BASIC12.68□□□□□ -0.38
LINC01549A6NIU2 CNGB1-201ENST00000251102 5641 ntAPPRIS P3 TSL 1 (best) BASIC12.68□□□□□ -0.38
LINC01549A6NIU2 FAM110A-202ENST00000304189 1856 ntAPPRIS P1 TSL 2 BASIC12.68□□□□□ -0.38
LINC01549A6NIU2 NKIRAS1-208ENST00000443659 2391 ntAPPRIS P2 TSL 5 BASIC12.67□□□□□ -0.38
LINC01549A6NIU2 ERCC2-205ENST00000485403 1538 ntTSL 1 (best) BASIC12.67□□□□□ -0.38
LINC01549A6NIU2 PHF20L1-220ENST00000622263 3375 ntAPPRIS P1 TSL 5 BASIC12.67□□□□□ -0.38
LINC01549A6NIU2 MEI1-215ENST00000540833 2326 ntTSL 5 BASIC12.67□□□□□ -0.38
LINC01549A6NIU2 NGFR-202ENST00000504201 1840 ntTSL 2 BASIC12.67□□□□□ -0.38
LINC01549A6NIU2 DHX36-202ENST00000329463 2985 ntAPPRIS ALT2 TSL 1 (best) BASIC12.67□□□□□ -0.38
LINC01549A6NIU2 HAND2-AS1-202ENST00000502896 5278 ntTSL 1 (best) BASIC12.67□□□□□ -0.38
LINC01549A6NIU2 ELMOD1-202ENST00000443271 1990 ntAPPRIS P1 TSL 2 BASIC12.67□□□□□ -0.38
LINC01549A6NIU2 NUDT17-201ENST00000334513 1473 ntAPPRIS P1 TSL 5 BASIC12.67□□□□□ -0.38
LINC01549A6NIU2 TRAPPC11-202ENST00000357207 4435 ntTSL 1 (best) BASIC12.67□□□□□ -0.38
LINC01549A6NIU2 TTLL10-201ENST00000379288 2114 ntTSL 1 (best) BASIC12.67□□□□□ -0.38
LINC01549A6NIU2 PFKL-201ENST00000349048 2912 ntAPPRIS P1 TSL 1 (best) BASIC12.67□□□□□ -0.38
LINC01549A6NIU2 ADCY1-204ENST00000621543 1647 ntTSL 5 BASIC12.67□□□□□ -0.38
LINC01549A6NIU2 GAS7-213ENST00000580865 2417 ntTSL 1 (best) BASIC12.67□□□□□ -0.38
LINC01549A6NIU2 CNTNAP3B-201ENST00000276974 3240 ntTSL 5 BASIC12.67□□□□□ -0.38
LINC01549A6NIU2 AFTPH-202ENST00000238856 4040 ntAPPRIS P3 TSL 1 (best) BASIC12.67□□□□□ -0.38
LINC01549A6NIU2 KIRREL2-205ENST00000592409 2563 ntAPPRIS ALT2 TSL 1 (best) BASIC12.67□□□□□ -0.38
LINC01549A6NIU2 HACD1-201ENST00000326961 773 ntTSL 2 BASIC12.67□□□□□ -0.38
LINC01549A6NIU2 SPATA2L-202ENST00000335360 1001 ntTSL 1 (best) BASIC12.67□□□□□ -0.38
LINC01549A6NIU2 DGKZ-202ENST00000343674 3816 ntAPPRIS P3 TSL 2 BASIC12.67□□□□□ -0.38
LINC01549A6NIU2 HCFC1R1-202ENST00000354679 765 ntTSL 2 BASIC12.67□□□□□ -0.38
LINC01549A6NIU2 ELP6-205ENST00000439305 880 ntTSL 2 BASIC12.67□□□□□ -0.38
LINC01549A6NIU2 MCCD1P1-208ENST00000445732 328 ntBASIC12.67□□□□□ -0.38
LINC01549A6NIU2 GATS-209ENST00000454084 1030 ntTSL 3 BASIC12.67□□□□□ -0.38
LINC01549A6NIU2 AL359182.2-201ENST00000457720 606 ntTSL 3 BASIC12.67□□□□□ -0.38
LINC01549A6NIU2 ALKBH6-212ENST00000485128 959 ntTSL 5 BASIC12.67□□□□□ -0.38
LINC01549A6NIU2 TMEM218-207ENST00000528724 1117 ntTSL 5 BASIC12.67□□□□□ -0.38
LINC01549A6NIU2 TMEM218-214ENST00000532156 954 ntTSL 1 (best) BASIC12.67□□□□□ -0.38
LINC01549A6NIU2 PLEKHJ1-205ENST00000587394 937 ntTSL 2 BASIC12.67□□□□□ -0.38
LINC01549A6NIU2 EML2-AS1-202ENST00000591087 838 ntTSL 3 BASIC12.67□□□□□ -0.38
LINC01549A6NIU2 AL050303.2-201ENST00000619798 666 ntBASIC12.67□□□□□ -0.38
LINC01549A6NIU2 PLXNC1-201ENST00000258526 7346 ntAPPRIS P1 TSL 1 (best) BASIC12.67□□□□□ -0.38
LINC01549A6NIU2 NEDD4-202ENST00000435532 5869 ntAPPRIS P1 TSL 1 (best) BASIC12.67□□□□□ -0.38
LINC01549A6NIU2 SPIDR-227ENST00000541342 3311 ntAPPRIS ALT2 TSL 2 BASIC12.67□□□□□ -0.38
LINC01549A6NIU2 NAA60-201ENST00000360862 2522 ntTSL 2 BASIC12.67□□□□□ -0.38
LINC01549A6NIU2 NR4A1-204ENST00000394825 2528 ntAPPRIS P1 TSL 1 (best) BASIC12.67□□□□□ -0.38
LINC01549A6NIU2 SRPK1-204ENST00000373825 4592 ntAPPRIS P1 TSL 1 (best) BASIC12.67□□□□□ -0.38
LINC01549A6NIU2 TSPAN3-210ENST00000561277 1592 ntTSL 5 BASIC12.67□□□□□ -0.38
LINC01549A6NIU2 PACRGL-203ENST00000444671 1720 ntTSL 2 BASIC12.67□□□□□ -0.38
LINC01549A6NIU2 KANK2-201ENST00000586659 5162 ntAPPRIS P3 TSL 1 (best) BASIC12.67□□□□□ -0.38
LINC01549A6NIU2 FBXO7-201ENST00000266087 2195 ntAPPRIS P1 TSL 1 (best) BASIC12.67□□□□□ -0.38
LINC01549A6NIU2 PHF1-202ENST00000374516 2330 ntAPPRIS P1 TSL 1 (best) BASIC12.67□□□□□ -0.38
LINC01549A6NIU2 GMDS-AS1-201ENST00000456943 2308 ntTSL 2 BASIC12.67□□□□□ -0.38
LINC01549A6NIU2 CXXC1-201ENST00000285106 2936 ntAPPRIS P3 TSL 1 (best) BASIC12.67□□□□□ -0.38
LINC01549A6NIU2 SLC4A2-214ENST00000485713 4925 ntAPPRIS P3 TSL 1 (best) BASIC12.67□□□□□ -0.38
LINC01549A6NIU2 SERTM1-201ENST00000315190 3207 ntAPPRIS P1 TSL 1 (best) BASIC12.67□□□□□ -0.38
LINC01549A6NIU2 DCAF17-202ENST00000375255 5828 ntAPPRIS P3 TSL 1 (best) BASIC12.67□□□□□ -0.38
LINC01549A6NIU2 HAUS8-202ENST00000448593 1545 ntAPPRIS ALT2 TSL 5 BASIC12.67□□□□□ -0.38
LINC01549A6NIU2 ARHGAP4-204ENST00000393721 2721 ntTSL 5 BASIC12.67□□□□□ -0.38
LINC01549A6NIU2 MGEA5-203ENST00000370094 3314 ntTSL 1 (best) BASIC12.67□□□□□ -0.38
LINC01549A6NIU2 KIF1A-201ENST00000320389 8832 ntAPPRIS P1 TSL 5 BASIC12.66□□□□□ -0.38
LINC01549A6NIU2 TMEM19-201ENST00000266673 5656 ntAPPRIS P1 TSL 1 (best) BASIC12.66□□□□□ -0.38
LINC01549A6NIU2 ZNF786-201ENST00000316286 3144 ntTSL 1 (best) BASIC12.66□□□□□ -0.38
LINC01549A6NIU2 ATP6V0E2-AS1-201ENST00000461019 2973 ntTSL 1 (best) BASIC12.66□□□□□ -0.38
LINC01549A6NIU2 GMIP-204ENST00000587238 2987 ntTSL 1 (best) BASIC12.66□□□□□ -0.38
LINC01549A6NIU2 WASF1-205ENST00000392587 2675 ntAPPRIS P1 TSL 1 (best) BASIC12.66□□□□□ -0.38
LINC01549A6NIU2 LRFN3-201ENST00000246529 2513 ntAPPRIS P1 TSL 1 (best) BASIC12.66□□□□□ -0.38
LINC01549A6NIU2 GUCY1A2-202ENST00000347596 2532 ntTSL 1 (best) BASIC12.66□□□□□ -0.38
LINC01549A6NIU2 AC004951.4-201ENST00000454572 2076 ntTSL 1 (best) BASIC12.66□□□□□ -0.38
Retrieved 100 of 98,524 protein–RNA pairs in 43.1 ms