Protein–RNA interactions for Protein: Q86VN1

VPS36, Vacuolar protein-sorting-associated protein 36, humanhuman

Predictions only

Length 386 aa.

Download Table  
Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
VPS36Q86VN1 MRPL4-201ENST00000253099 1455 ntAPPRIS P2 TSL 1 (best) BASIC26.29■■□□□ 1.8
VPS36Q86VN1 CIB2-202ENST00000539011 1511 ntTSL 1 (best) BASIC26.29■■□□□ 1.8
VPS36Q86VN1 FBXL8-201ENST00000258200 1658 ntAPPRIS P1 TSL 1 (best) BASIC26.28■■□□□ 1.8
VPS36Q86VN1 NRM-201ENST00000259953 1755 ntAPPRIS P2 TSL 2 BASIC26.28■■□□□ 1.8
VPS36Q86VN1 SLC16A11-202ENST00000447225 1779 ntAPPRIS ALT2 TSL 5 BASIC26.28■■□□□ 1.8
VPS36Q86VN1 ST7L-206ENST00000369666 1815 ntTSL 1 (best) BASIC26.28■■□□□ 1.8
VPS36Q86VN1 LAGE3-201ENST00000357360 949 ntAPPRIS P1 TSL 1 (best) BASIC26.28■■□□□ 1.8
VPS36Q86VN1 CASP9-202ENST00000348549 1621 ntTSL 1 (best) BASIC26.28■■□□□ 1.8
VPS36Q86VN1 RINL-208ENST00000598904 1846 ntAPPRIS P3 TSL 5 BASIC26.28■■□□□ 1.8
VPS36Q86VN1 KAZALD1-201ENST00000370200 1913 ntAPPRIS P1 TSL 1 (best) BASIC26.27■■□□□ 1.8
VPS36Q86VN1 EVA1C-201ENST00000300255 1998 ntAPPRIS P3 TSL 1 (best) BASIC26.27■■□□□ 1.8
VPS36Q86VN1 TSGA13-204ENST00000456951 2046 ntAPPRIS P2 TSL 2 BASIC26.27■■□□□ 1.8
VPS36Q86VN1 SNHG7-204ENST00000447221 2157 ntTSL 2 BASIC26.27■■□□□ 1.8
VPS36Q86VN1 AC096888.1-201ENST00000487097 565 ntTSL 4 BASIC26.27■■□□□ 1.8
VPS36Q86VN1 U2AF2-206ENST00000590551 1104 ntTSL 3 BASIC26.27■■□□□ 1.8
VPS36Q86VN1 SLC25A23-203ENST00000334510 1424 ntTSL 1 (best) BASIC26.27■■□□□ 1.8
VPS36Q86VN1 RRAD-202ENST00000420652 1476 ntAPPRIS P1 TSL 1 (best) BASIC26.27■■□□□ 1.8
VPS36Q86VN1 SSBP4-201ENST00000270061 1768 ntAPPRIS P3 TSL 1 (best) BASIC26.27■■□□□ 1.8
VPS36Q86VN1 RAP2A-201ENST00000245304 5487 ntAPPRIS P1 TSL 1 (best) BASIC26.27■■□□□ 1.8
VPS36Q86VN1 HSF1-204ENST00000528838 2142 ntAPPRIS P1 TSL 1 (best) BASIC26.27■■□□□ 1.8
VPS36Q86VN1 SOX1-201ENST00000330949 2842 ntAPPRIS P1 BASIC26.26■■□□□ 1.79
VPS36Q86VN1 WIPI2-204ENST00000404704 1663 ntTSL 5 BASIC26.26■■□□□ 1.79
VPS36Q86VN1 KDM4C-203ENST00000401787 1406 ntTSL 1 (best) BASIC26.26■■□□□ 1.79
VPS36Q86VN1 EBPL-201ENST00000242827 914 ntAPPRIS P1 TSL 1 (best) BASIC26.26■■□□□ 1.79
VPS36Q86VN1 PKDCC-201ENST00000294964 2502 ntAPPRIS P1 TSL 1 (best) BASIC26.26■■□□□ 1.79
VPS36Q86VN1 KAT8-206ENST00000543774 1846 ntAPPRIS P1 TSL 5 BASIC26.25■■□□□ 1.79
VPS36Q86VN1 DHRS13-203ENST00000426464 1569 ntTSL 2 BASIC26.25■■□□□ 1.79
VPS36Q86VN1 CACNA1H-201ENST00000348261 8208 ntAPPRIS P4 TSL 1 (best) BASIC26.25■■□□□ 1.79
VPS36Q86VN1 C5orf66-AS1-201ENST00000507035 843 ntTSL 2 BASIC26.25■■□□□ 1.79
VPS36Q86VN1 GNPTG-204ENST00000527137 386 ntTSL 2 BASIC26.25■■□□□ 1.79
VPS36Q86VN1 GYG2-205ENST00000398806 1956 ntAPPRIS ALT2 TSL 1 (best) BASIC26.25■■□□□ 1.79
VPS36Q86VN1 KLF3-AS1-202ENST00000440181 2368 ntTSL 2 BASIC26.25■■□□□ 1.79
VPS36Q86VN1 EMC10-206ENST00000598585 1610 ntAPPRIS ALT2 TSL 5 BASIC26.25■■□□□ 1.79
VPS36Q86VN1 VSTM2L-202ENST00000373461 1959 ntAPPRIS P1 TSL 1 (best) BASIC26.24■■□□□ 1.79
VPS36Q86VN1 LDLRAD3-203ENST00000528989 1879 ntTSL 1 (best) BASIC26.24■■□□□ 1.79
VPS36Q86VN1 FBXL6-201ENST00000331890 1785 ntAPPRIS P3 TSL 1 (best) BASIC26.24■■□□□ 1.79
VPS36Q86VN1 CABP1-202ENST00000316803 1658 ntTSL 1 (best) BASIC26.24■■□□□ 1.79
VPS36Q86VN1 SH3GL1-201ENST00000269886 2516 ntAPPRIS P1 TSL 1 (best) BASIC26.24■■□□□ 1.79
VPS36Q86VN1 PORCN-202ENST00000355961 1848 ntAPPRIS ALT1 TSL 1 (best) BASIC26.23■■□□□ 1.79
VPS36Q86VN1 PPP1R14C-201ENST00000361131 2152 ntAPPRIS P1 TSL 1 (best) BASIC26.23■■□□□ 1.79
VPS36Q86VN1 BTBD6-203ENST00000392554 2176 ntAPPRIS P2 TSL 1 (best) BASIC26.23■■□□□ 1.79
VPS36Q86VN1 C12orf75-201ENST00000443585 1366 ntAPPRIS P1 TSL 2 BASIC26.23■■□□□ 1.79
VPS36Q86VN1 HS3ST6-201ENST00000454677 1273 ntAPPRIS P1 TSL 1 (best) BASIC26.23■■□□□ 1.79
VPS36Q86VN1 MTMR1-214ENST00000542156 1227 ntTSL 1 (best) BASIC26.23■■□□□ 1.79
VPS36Q86VN1 DUX4L11-201ENST00000611504 1267 ntBASIC26.23■■□□□ 1.79
VPS36Q86VN1 DUX4L12-201ENST00000614593 1267 ntBASIC26.23■■□□□ 1.79
VPS36Q86VN1 DUX4L14-201ENST00000621227 1267 ntBASIC26.23■■□□□ 1.79
VPS36Q86VN1 C9orf50-201ENST00000372478 1620 ntAPPRIS P2 TSL 2 BASIC26.23■■□□□ 1.79
VPS36Q86VN1 BTBD7-201ENST00000298896 2621 ntTSL 1 (best) BASIC26.23■■□□□ 1.79
VPS36Q86VN1 CAMK1D-203ENST00000615792 1725 ntTSL 5 BASIC26.22■■□□□ 1.79
VPS36Q86VN1 LMTK3-201ENST00000270238 4972 ntAPPRIS P2 TSL 1 (best) BASIC26.22■■□□□ 1.79
VPS36Q86VN1 LAPTM4B-203ENST00000521545 915 ntAPPRIS P1 TSL 1 (best) BASIC26.22■■□□□ 1.79
VPS36Q86VN1 RABL6-202ENST00000357466 1820 ntAPPRIS ALT2 TSL 1 (best) BASIC26.22■■□□□ 1.79
VPS36Q86VN1 LACTBL1-202ENST00000618559 1500 ntAPPRIS ALT2 TSL 5 BASIC26.22■■□□□ 1.79
VPS36Q86VN1 TBL1X-201ENST00000217964 5871 ntTSL 1 (best) BASIC26.21■■□□□ 1.79
VPS36Q86VN1 SLC25A10-202ENST00000350690 1885 ntAPPRIS P1 TSL 1 (best) BASIC26.21■■□□□ 1.79
VPS36Q86VN1 TMCO6-201ENST00000252100 1834 ntTSL 1 (best) BASIC26.21■■□□□ 1.79
VPS36Q86VN1 AC020928.2-201ENST00000588717 2197 ntBASIC26.21■■□□□ 1.79
VPS36Q86VN1 FBXL20-203ENST00000577399 1620 ntTSL 5 BASIC26.21■■□□□ 1.79
VPS36Q86VN1 TSPOAP1-AS1-205ENST00000580022 2337 ntTSL 2 BASIC26.2■■□□□ 1.79
VPS36Q86VN1 AC148477.6-201ENST00000623746 465 ntBASIC26.2■■□□□ 1.78
VPS36Q86VN1 ATP8B2-201ENST00000368487 1523 ntTSL 1 (best) BASIC26.19■■□□□ 1.78
VPS36Q86VN1 MIR219A2-201ENST00000608502 1504 ntBASIC26.19■■□□□ 1.78
VPS36Q86VN1 SURF1-201ENST00000371974 1093 ntAPPRIS P1 TSL 1 (best) BASIC26.19■■□□□ 1.78
VPS36Q86VN1 CAAP1-205ENST00000520187 773 ntTSL 5 BASIC26.19■■□□□ 1.78
VPS36Q86VN1 SURF1-205ENST00000615505 991 ntTSL 1 (best) BASIC26.19■■□□□ 1.78
VPS36Q86VN1 C16orf72-201ENST00000327827 5953 ntAPPRIS P1 TSL 1 (best) BASIC26.19■■□□□ 1.78
VPS36Q86VN1 CRELD2-203ENST00000404488 1577 ntAPPRIS ALT2 TSL 1 (best) BASIC26.18■■□□□ 1.78
VPS36Q86VN1 STARD10-220ENST00000545082 1085 ntTSL 3 BASIC26.18■■□□□ 1.78
VPS36Q86VN1 C8orf58-206ENST00000614574 1955 ntAPPRIS ALT2 TSL 5 BASIC26.17■■□□□ 1.78
VPS36Q86VN1 GTF2IP1-204ENST00000616377 2632 ntTSL 2 BASIC26.17■■□□□ 1.78
VPS36Q86VN1 RANBP1-202ENST00000402752 1132 ntAPPRIS ALT1 TSL 1 (best) BASIC26.17■■□□□ 1.78
VPS36Q86VN1 DDX42-201ENST00000359353 2783 ntTSL 5 BASIC26.16■■□□□ 1.78
VPS36Q86VN1 SNX5-201ENST00000377759 2270 ntAPPRIS P1 TSL 1 (best) BASIC26.16■■□□□ 1.78
VPS36Q86VN1 RFWD2-201ENST00000308769 2124 ntTSL 1 (best) BASIC26.16■■□□□ 1.78
VPS36Q86VN1 CTXN1-201ENST00000318978 1274 ntAPPRIS P1 TSL 1 (best) BASIC26.16■■□□□ 1.78
VPS36Q86VN1 BIN1-211ENST00000409400 2143 ntTSL 1 (best) BASIC26.16■■□□□ 1.78
VPS36Q86VN1 FSD1-204ENST00000597590 1634 ntTSL 5 BASIC26.16■■□□□ 1.78
VPS36Q86VN1 FAM220A-206ENST00000616824 2211 ntTSL 1 (best) BASIC26.16■■□□□ 1.78
VPS36Q86VN1 TRIM54-201ENST00000296098 2027 ntTSL 1 (best) BASIC26.15■■□□□ 1.78
VPS36Q86VN1 C2CD4D-201ENST00000454109 1757 ntAPPRIS P1 TSL 2 BASIC26.15■■□□□ 1.78
VPS36Q86VN1 NELFB-201ENST00000343053 2698 ntAPPRIS ALT2 TSL 1 (best) BASIC26.15■■□□□ 1.78
VPS36Q86VN1 MXD3-201ENST00000423571 1534 ntTSL 2 BASIC26.15■■□□□ 1.78
VPS36Q86VN1 YRDC-201ENST00000373044 1826 ntAPPRIS P1 TSL 1 (best) BASIC26.15■■□□□ 1.78
VPS36Q86VN1 LSM6-202ENST00000502781 1352 ntAPPRIS P1 TSL 1 (best) BASIC26.15■■□□□ 1.78
VPS36Q86VN1 ZDHHC16-206ENST00000370854 1798 ntAPPRIS P4 TSL 1 (best) BASIC26.15■■□□□ 1.78
VPS36Q86VN1 HAS1-205ENST00000601714 2086 ntTSL 1 (best) BASIC26.15■■□□□ 1.78
VPS36Q86VN1 KREMEN2-205ENST00000575769 1922 ntAPPRIS ALT2 TSL 1 (best) BASIC26.14■■□□□ 1.78
VPS36Q86VN1 AURKAIP1-203ENST00000338370 1072 ntAPPRIS P1 TSL 1 (best) BASIC26.14■■□□□ 1.78
VPS36Q86VN1 HES6-205ENST00000409356 528 ntTSL 2 BASIC26.14■■□□□ 1.78
VPS36Q86VN1 AC187653.1-201ENST00000506382 702 ntAPPRIS P1 TSL 5 BASIC26.14■■□□□ 1.78
VPS36Q86VN1 LINC01896-206ENST00000575722 1256 ntTSL 2 BASIC26.14■■□□□ 1.78
VPS36Q86VN1 KLC1-203ENST00000347839 2271 ntTSL 5 BASIC26.14■■□□□ 1.77
VPS36Q86VN1 CADPS-203ENST00000383710 5471 ntAPPRIS ALT2 TSL 1 (best) BASIC26.13■■□□□ 1.77
VPS36Q86VN1 GDF1-201ENST00000247005 2517 ntAPPRIS P1 TSL 1 (best) BASIC26.13■■□□□ 1.77
VPS36Q86VN1 CERS1-204ENST00000623882 2517 ntTSL 1 (best) BASIC26.13■■□□□ 1.77
VPS36Q86VN1 HLA-V-202ENST00000446817 847 ntBASIC26.13■■□□□ 1.77
VPS36Q86VN1 MBOAT7-201ENST00000245615 2529 ntAPPRIS P1 TSL 1 (best) BASIC26.13■■□□□ 1.77
VPS36Q86VN1 MAZ-202ENST00000322945 2532 ntAPPRIS ALT2 TSL 1 (best) BASIC26.13■■□□□ 1.77
VPS36Q86VN1 POLR3H-201ENST00000337566 1330 ntTSL 1 (best) BASIC26.13■■□□□ 1.77
Retrieved 100 of 98,524 protein–RNA pairs in 22.7 ms