Protein–RNA interactions for Protein: P55318

FOXA3, Hepatocyte nuclear factor 3-gamma, humanhuman

Predicted RBP Predictions only

Length 350 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
FOXA3P55318 BIN1-207ENST00000357970 2497 ntTSL 1 (best) BASIC18.28■□□□□ 0.52
FOXA3P55318 ZDHHC16-206ENST00000370854 1798 ntAPPRIS P4 TSL 1 (best) BASIC18.27■□□□□ 0.52
FOXA3P55318 AKT1S1-203ENST00000391831 2025 ntAPPRIS P1 TSL 2 BASIC18.27■□□□□ 0.52
FOXA3P55318 RAX2-202ENST00000555978 2145 ntAPPRIS P1 TSL 1 (best) BASIC18.27■□□□□ 0.52
FOXA3P55318 SNX21-204ENST00000372542 1824 ntAPPRIS P1 TSL 2 BASIC18.27■□□□□ 0.52
FOXA3P55318 DDAH2-212ENST00000375789 1688 ntAPPRIS P1 TSL 2 BASIC18.27■□□□□ 0.52
FOXA3P55318 DDAH2-213ENST00000375792 1688 ntAPPRIS P1 TSL 1 (best) BASIC18.27■□□□□ 0.52
FOXA3P55318 RPUSD1-201ENST00000007264 2050 ntAPPRIS P1 TSL 2 BASIC18.27■□□□□ 0.51
FOXA3P55318 USP12-201ENST00000282344 4511 ntAPPRIS P1 TSL 1 (best) BASIC18.27■□□□□ 0.51
FOXA3P55318 FZD9-201ENST00000344575 2338 ntAPPRIS P1 BASIC18.27■□□□□ 0.51
FOXA3P55318 KCNG1-201ENST00000371571 2211 ntAPPRIS P1 TSL 1 (best) BASIC18.26■□□□□ 0.51
FOXA3P55318 SOX10-201ENST00000360880 2861 ntAPPRIS P1 TSL 1 (best) BASIC18.26■□□□□ 0.51
FOXA3P55318 SOX10-202ENST00000396884 2879 ntAPPRIS P1 TSL 1 (best) BASIC18.26■□□□□ 0.51
FOXA3P55318 HSD11B1L-202ENST00000339423 1660 ntAPPRIS P3 TSL 1 (best) BASIC18.26■□□□□ 0.51
FOXA3P55318 SCX-201ENST00000567180 999 ntAPPRIS P1 TSL 1 (best) BASIC18.26■□□□□ 0.51
FOXA3P55318 R3HCC1-201ENST00000265806 1773 ntAPPRIS ALT2 TSL 1 (best) BASIC18.26■□□□□ 0.51
FOXA3P55318 RING1-201ENST00000374656 1752 ntAPPRIS P1 TSL 1 (best) BASIC18.26■□□□□ 0.51
FOXA3P55318 R3HDM4-203ENST00000587975 1765 ntTSL 3 BASIC18.26■□□□□ 0.51
FOXA3P55318 YRDC-201ENST00000373044 1826 ntAPPRIS P1 TSL 1 (best) BASIC18.26■□□□□ 0.51
FOXA3P55318 AC133561.1-201ENST00000568600 2415 ntBASIC18.25■□□□□ 0.51
FOXA3P55318 TTC3-225ENST00000540756 2025 ntTSL 2 BASIC18.25■□□□□ 0.51
FOXA3P55318 AUTS2-202ENST00000403018 957 ntTSL 1 (best) BASIC18.25■□□□□ 0.51
FOXA3P55318 AL109917.1-201ENST00000412228 906 ntTSL 2 BASIC18.25■□□□□ 0.51
FOXA3P55318 GABBR2-201ENST00000259455 5788 ntAPPRIS P1 TSL 1 (best) BASIC18.25■□□□□ 0.51
FOXA3P55318 BIN1-211ENST00000409400 2143 ntTSL 1 (best) BASIC18.25■□□□□ 0.51
FOXA3P55318 MARCKSL1-201ENST00000329421 1699 ntAPPRIS P1 TSL 1 (best) BASIC18.25■□□□□ 0.51
FOXA3P55318 RAB11FIP1-203ENST00000522727 1866 ntTSL 1 (best) BASIC18.24■□□□□ 0.51
FOXA3P55318 AC142472.1-201ENST00000612013 1741 ntBASIC18.24■□□□□ 0.51
FOXA3P55318 TARSL2-207ENST00000615656 2356 ntAPPRIS ALT2 TSL 5 BASIC18.24■□□□□ 0.51
FOXA3P55318 TSPAN10-203ENST00000574882 1837 ntAPPRIS P2 TSL 1 (best) BASIC18.23■□□□□ 0.51
FOXA3P55318 C8orf58-201ENST00000289989 2016 ntAPPRIS P3 TSL 5 BASIC18.23■□□□□ 0.51
FOXA3P55318 REPS2-202ENST00000357277 7953 ntAPPRIS P3 TSL 1 (best) BASIC18.23■□□□□ 0.51
FOXA3P55318 ONECUT3-201ENST00000382349 8318 ntAPPRIS P1 TSL 5 BASIC18.23■□□□□ 0.51
FOXA3P55318 ST3GAL5-268ENST00000640982 2465 ntAPPRIS ALT2 TSL 5 BASIC18.23■□□□□ 0.51
FOXA3P55318 FEZ1-201ENST00000278919 1748 ntAPPRIS P1 TSL 1 (best) BASIC18.23■□□□□ 0.51
FOXA3P55318 ZNRF1-201ENST00000320619 2479 ntTSL 1 (best) BASIC18.23■□□□□ 0.51
FOXA3P55318 P4HA3-201ENST00000331597 2274 ntAPPRIS P1 TSL 1 (best) BASIC18.23■□□□□ 0.51
FOXA3P55318 RNPEP-202ENST00000367286 2282 ntTSL 5 BASIC18.23■□□□□ 0.51
FOXA3P55318 ARMC6-201ENST00000269932 2412 ntAPPRIS P1 TSL 5 BASIC18.22■□□□□ 0.51
FOXA3P55318 GRK4-204ENST00000503518 2136 ntTSL 1 (best) BASIC18.22■□□□□ 0.51
FOXA3P55318 DACT1-201ENST00000335867 2571 ntAPPRIS P3 TSL 1 (best) BASIC18.22■□□□□ 0.51
FOXA3P55318 IL13RA1-201ENST00000371642 1096 ntTSL 1 (best) BASIC18.22■□□□□ 0.51
FOXA3P55318 THRA-209ENST00000584985 2421 ntTSL 1 (best) BASIC18.22■□□□□ 0.51
FOXA3P55318 NOCT-201ENST00000280614 1952 ntAPPRIS P1 TSL 1 (best) BASIC18.22■□□□□ 0.51
FOXA3P55318 CCDC154-201ENST00000389176 2212 ntAPPRIS P5 TSL 5 BASIC18.22■□□□□ 0.51
FOXA3P55318 GTF2E2-201ENST00000355904 1762 ntAPPRIS P1 TSL 1 (best) BASIC18.22■□□□□ 0.51
FOXA3P55318 CAPN10-207ENST00000391984 2644 ntAPPRIS P2 TSL 1 (best) BASIC18.21■□□□□ 0.51
FOXA3P55318 AZIN2-201ENST00000294517 2182 ntAPPRIS P1 TSL 1 (best) BASIC18.21■□□□□ 0.51
FOXA3P55318 PTPN2-202ENST00000327283 1706 ntAPPRIS P1 TSL 1 (best) BASIC18.21■□□□□ 0.51
FOXA3P55318 CPOX-201ENST00000264193 2825 ntAPPRIS P1 TSL 1 (best) BASIC18.21■□□□□ 0.51
FOXA3P55318 LINC01089-207ENST00000538335 630 ntTSL 3 BASIC18.21■□□□□ 0.51
FOXA3P55318 RFFL-206ENST00000447669 2030 ntAPPRIS P1 TSL 5 BASIC18.21■□□□□ 0.51
FOXA3P55318 MED17-227ENST00000640521 2047 ntTSL 5 BASIC18.21■□□□□ 0.51
FOXA3P55318 SNF8-202ENST00000502492 2319 ntAPPRIS P3 TSL 1 (best) BASIC18.21■□□□□ 0.51
FOXA3P55318 FRMD8-203ENST00000416776 1818 ntTSL 2 BASIC18.21■□□□□ 0.51
FOXA3P55318 TMEM150C-201ENST00000449862 1990 ntAPPRIS P1 TSL 1 (best) BASIC18.21■□□□□ 0.5
FOXA3P55318 SLC35A2-207ENST00000445167 1739 ntTSL 1 (best) BASIC18.2■□□□□ 0.5
FOXA3P55318 WRNIP1-205ENST00000618555 2651 ntAPPRIS P1 TSL 1 (best) BASIC18.2■□□□□ 0.5
FOXA3P55318 CABLES1-201ENST00000256925 5002 ntAPPRIS P4 TSL 1 (best) BASIC18.2■□□□□ 0.5
FOXA3P55318 SAMD4B-208ENST00000598913 2877 ntAPPRIS ALT1 TSL 1 (best) BASIC18.2■□□□□ 0.5
FOXA3P55318 NMB-202ENST00000394588 1017 ntTSL 1 (best) BASIC18.2■□□□□ 0.5
FOXA3P55318 ANKRD16-201ENST00000191063 1567 ntTSL 3 BASIC18.2■□□□□ 0.5
FOXA3P55318 BCAP31-201ENST00000345046 1589 ntAPPRIS P1 TSL 1 (best) BASIC18.2■□□□□ 0.5
FOXA3P55318 C3orf80-201ENST00000326474 2718 ntAPPRIS P1 BASIC18.2■□□□□ 0.5
FOXA3P55318 CASP9-202ENST00000348549 1621 ntTSL 1 (best) BASIC18.2■□□□□ 0.5
FOXA3P55318 MNX1-207ENST00000543409 1620 ntAPPRIS ALT2 TSL 1 (best) BASIC18.2■□□□□ 0.5
FOXA3P55318 PREB-202ENST00000406567 1910 ntTSL 5 BASIC18.19■□□□□ 0.5
FOXA3P55318 AUTS2-203ENST00000406775 5950 ntAPPRIS ALT2 TSL 1 (best) BASIC18.19■□□□□ 0.5
FOXA3P55318 TMEM150A-202ENST00000334462 1518 ntAPPRIS P1 TSL 1 (best) BASIC18.19■□□□□ 0.5
FOXA3P55318 STOML1-202ENST00000316911 1891 ntTSL 1 (best) BASIC18.19■□□□□ 0.5
FOXA3P55318 MAPK8IP1P1-201ENST00000574657 1439 ntBASIC18.19■□□□□ 0.5
FOXA3P55318 AP000547.3-202ENST00000592107 1019 ntTSL 1 (best) BASIC18.19■□□□□ 0.5
FOXA3P55318 NAB1-202ENST00000409581 2360 ntAPPRIS P3 TSL 2 BASIC18.19■□□□□ 0.5
FOXA3P55318 SRPK3-205ENST00000393786 1900 ntAPPRIS ALT2 TSL 1 (best) BASIC18.19■□□□□ 0.5
FOXA3P55318 MMD-201ENST00000262065 2735 ntAPPRIS P1 TSL 1 (best) BASIC18.19■□□□□ 0.5
FOXA3P55318 ATP5A1-220ENST00000593152 2258 ntTSL 2 BASIC18.19■□□□□ 0.5
FOXA3P55318 AC010501.1-201ENST00000606270 1962 ntBASIC18.19■□□□□ 0.5
FOXA3P55318 SOS2-201ENST00000216373 5498 ntAPPRIS P1 TSL 1 (best) BASIC18.19■□□□□ 0.5
FOXA3P55318 CRTAP-202ENST00000449224 1811 ntAPPRIS ALT2 TSL 2 BASIC18.19■□□□□ 0.5
FOXA3P55318 AL139125.2-201ENST00000623134 1869 ntBASIC18.18■□□□□ 0.5
FOXA3P55318 AL357033.1-201ENST00000370520 1933 ntTSL 2 BASIC18.18■□□□□ 0.5
FOXA3P55318 RABGGTA-202ENST00000399409 2265 ntAPPRIS P1 TSL 1 (best) BASIC18.18■□□□□ 0.5
FOXA3P55318 JMJD8-202ENST00000562111 823 ntTSL 2 BASIC18.18■□□□□ 0.5
FOXA3P55318 WHAMMP2-203ENST00000563942 1603 ntBASIC18.18■□□□□ 0.5
FOXA3P55318 DCUN1D5-201ENST00000260247 1337 ntAPPRIS P1 TSL 1 (best) BASIC18.18■□□□□ 0.5
FOXA3P55318 APBA3-201ENST00000316757 2075 ntAPPRIS P1 TSL 1 (best) BASIC18.18■□□□□ 0.5
FOXA3P55318 TMEM268-202ENST00000374049 4578 ntAPPRIS ALT1 TSL 5 BASIC18.17■□□□□ 0.5
FOXA3P55318 RCC1L-205ENST00000618035 1409 ntTSL 1 (best) BASIC18.17■□□□□ 0.5
FOXA3P55318 SMOX-202ENST00000305958 2233 ntAPPRIS P1 TSL 1 (best) BASIC18.17■□□□□ 0.5
FOXA3P55318 TMEM44-202ENST00000347147 2245 ntAPPRIS P1 TSL 1 (best) BASIC18.17■□□□□ 0.5
FOXA3P55318 CEBPB-AS1-201ENST00000613921 2648 ntTSL 3 BASIC18.17■□□□□ 0.5
FOXA3P55318 NRM-201ENST00000259953 1755 ntAPPRIS P2 TSL 2 BASIC18.17■□□□□ 0.5
FOXA3P55318 TTC9-201ENST00000256367 5217 ntAPPRIS P1 TSL 1 (best) BASIC18.16■□□□□ 0.5
FOXA3P55318 U2AF1-204ENST00000459639 1675 ntTSL 1 (best) BASIC18.16■□□□□ 0.5
FOXA3P55318 U2AF1L5-204ENST00000623375 1675 ntTSL 1 (best) BASIC18.16■□□□□ 0.5
FOXA3P55318 IRF2BP1-201ENST00000302165 2564 ntAPPRIS P1 BASIC18.16■□□□□ 0.5
FOXA3P55318 NRG2-203ENST00000340391 1944 ntTSL 5 BASIC18.16■□□□□ 0.5
FOXA3P55318 VSTM2L-202ENST00000373461 1959 ntAPPRIS P1 TSL 1 (best) BASIC18.16■□□□□ 0.5
FOXA3P55318 DPF1-206ENST00000420980 2227 ntTSL 1 (best) BASIC18.16■□□□□ 0.5
FOXA3P55318 CFAP73-201ENST00000335621 1514 ntAPPRIS P1 TSL 5 BASIC18.16■□□□□ 0.5
Retrieved 100 of 98,524 protein–RNA pairs in 163.1 ms