Protein–RNA interactions for Protein: O75631

UPK3A, Uroplakin-3a, humanhuman

Predictions only

Length 287 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
UPK3AO75631 KIF13A-207ENST00000502704 1330 ntTSL 1 (best) BASIC22.01■■□□□ 1.11
UPK3AO75631 CAPNS1-215ENST00000628018 1509 ntAPPRIS ALT2 TSL 5 BASIC22.01■■□□□ 1.11
UPK3AO75631 KDM4C-203ENST00000401787 1406 ntTSL 1 (best) BASIC22■■□□□ 1.11
UPK3AO75631 TAF10-201ENST00000299424 1215 ntAPPRIS P1 TSL 1 (best) BASIC22■■□□□ 1.11
UPK3AO75631 HSD17B12-202ENST00000395700 994 ntTSL 1 (best) BASIC22■■□□□ 1.11
UPK3AO75631 WDR86-204ENST00000477459 1428 ntTSL 2 BASIC21.99■■□□□ 1.11
UPK3AO75631 AC135731.1-201ENST00000569415 2548 ntBASIC21.99■■□□□ 1.11
UPK3AO75631 ARHGEF7-206ENST00000375741 5525 ntTSL 1 (best) BASIC21.99■■□□□ 1.11
UPK3AO75631 MED25-210ENST00000612854 801 ntTSL 5 BASIC21.99■■□□□ 1.11
UPK3AO75631 MED25-213ENST00000620467 1293 ntTSL 1 (best) BASIC21.99■■□□□ 1.11
UPK3AO75631 MED25-214ENST00000622402 642 ntTSL 5 BASIC21.99■■□□□ 1.11
UPK3AO75631 EMC10-206ENST00000598585 1610 ntAPPRIS ALT2 TSL 5 BASIC21.98■■□□□ 1.11
UPK3AO75631 KCNG2-201ENST00000316249 1401 ntAPPRIS P1 TSL 1 (best) BASIC21.98■■□□□ 1.11
UPK3AO75631 KCTD15-206ENST00000588881 1211 ntAPPRIS P1 TSL 2 BASIC21.98■■□□□ 1.11
UPK3AO75631 WHAMMP3-201ENST00000611636 1609 ntBASIC21.98■■□□□ 1.11
UPK3AO75631 PAPD7-201ENST00000230859 5459 ntTSL 1 (best) BASIC21.97■■□□□ 1.11
UPK3AO75631 CIB2-202ENST00000539011 1511 ntTSL 1 (best) BASIC21.97■■□□□ 1.11
UPK3AO75631 TPT1-202ENST00000379055 948 ntTSL 2 BASIC21.97■■□□□ 1.11
UPK3AO75631 NREP-216ENST00000508870 540 ntAPPRIS P1 TSL 4 BASIC21.97■■□□□ 1.11
UPK3AO75631 AC016595.1-201ENST00000559410 383 ntTSL 3 BASIC21.97■■□□□ 1.11
UPK3AO75631 SRP68-213ENST00000629930 165 ntTSL 5 BASIC21.97■■□□□ 1.11
UPK3AO75631 TTBK2-207ENST00000567840 1961 ntTSL 1 (best) BASIC21.97■■□□□ 1.11
UPK3AO75631 ACSS1-203ENST00000432802 2438 ntTSL 2 BASIC21.97■■□□□ 1.11
UPK3AO75631 YBX2-201ENST00000007699 1590 ntAPPRIS P1 TSL 1 (best) BASIC21.96■■□□□ 1.11
UPK3AO75631 CNNM2-201ENST00000369875 2059 ntTSL 1 (best) BASIC21.96■■□□□ 1.11
UPK3AO75631 HOXD-AS2-201ENST00000426965 927 ntTSL 1 (best) BASIC21.96■■□□□ 1.11
UPK3AO75631 R3HDM4-208ENST00000626716 138 ntTSL 5 BASIC21.96■■□□□ 1.11
UPK3AO75631 POU2F2-208ENST00000529952 1716 ntAPPRIS ALT2 TSL 1 (best) BASIC21.96■■□□□ 1.11
UPK3AO75631 C19orf47-202ENST00000392035 2126 ntAPPRIS ALT2 TSL 1 (best) BASIC21.95■■□□□ 1.11
UPK3AO75631 PPM1B-202ENST00000345249 1713 ntTSL 1 (best) BASIC21.95■■□□□ 1.1
UPK3AO75631 ALG2-203ENST00000476832 1880 ntAPPRIS P1 TSL 1 (best) BASIC21.95■■□□□ 1.1
UPK3AO75631 SPIRE1-202ENST00000409402 5665 ntAPPRIS ALT2 TSL 1 (best) BASIC21.95■■□□□ 1.1
UPK3AO75631 PKIG-207ENST00000372894 1191 ntAPPRIS P1 TSL 1 (best) BASIC21.95■■□□□ 1.1
UPK3AO75631 MDFIC-203ENST00000423503 474 ntTSL 1 (best) BASIC21.95■■□□□ 1.1
UPK3AO75631 SLC15A3-201ENST00000227880 2115 ntAPPRIS P1 TSL 1 (best) BASIC21.95■■□□□ 1.1
UPK3AO75631 PIP4K2B-204ENST00000619039 5734 ntAPPRIS P1 TSL 1 (best) BASIC21.95■■□□□ 1.1
UPK3AO75631 ACSS1-202ENST00000376726 2244 ntTSL 2 BASIC21.95■■□□□ 1.1
UPK3AO75631 FAM220A-206ENST00000616824 2211 ntTSL 1 (best) BASIC21.95■■□□□ 1.1
UPK3AO75631 LINC00588-201ENST00000521663 1875 ntTSL 2 BASIC21.94■■□□□ 1.1
UPK3AO75631 AC145676.1-201ENST00000514988 2004 ntBASIC21.94■■□□□ 1.1
UPK3AO75631 DEAF1-201ENST00000382409 2500 ntAPPRIS P1 TSL 1 (best) BASIC21.94■■□□□ 1.1
UPK3AO75631 MAP4K3-211ENST00000484274 407 ntTSL 2 BASIC21.94■■□□□ 1.1
UPK3AO75631 GTF2IP1-204ENST00000616377 2632 ntTSL 2 BASIC21.94■■□□□ 1.1
UPK3AO75631 CBWD5-202ENST00000377384 1347 ntTSL 1 (best) BASIC21.94■■□□□ 1.1
UPK3AO75631 AL359258.2-201ENST00000564063 1566 ntBASIC21.94■■□□□ 1.1
UPK3AO75631 CDC16-211ENST00000628084 2058 ntTSL 5 BASIC21.94■■□□□ 1.1
UPK3AO75631 CLPTM1L-201ENST00000320895 2500 ntAPPRIS P1 TSL 1 (best) BASIC21.93■■□□□ 1.1
UPK3AO75631 BCL7B-202ENST00000411832 1458 ntTSL 2 BASIC21.93■■□□□ 1.1
UPK3AO75631 KLHL21-203ENST00000463043 667 ntTSL 5 BASIC21.93■■□□□ 1.1
UPK3AO75631 ZBTB25-202ENST00000555220 1440 ntTSL 1 (best) BASIC21.93■■□□□ 1.1
UPK3AO75631 ANKS3-203ENST00000450067 2272 ntTSL 5 BASIC21.92■■□□□ 1.1
UPK3AO75631 FOXA3-201ENST00000302177 1989 ntAPPRIS P1 TSL 1 (best) BASIC21.92■■□□□ 1.1
UPK3AO75631 SLC12A2-202ENST00000343225 5509 ntAPPRIS ALT2 TSL 1 (best) BASIC21.92■■□□□ 1.1
UPK3AO75631 CLDND1-226ENST00000513287 999 ntAPPRIS P1 TSL 2 BASIC21.92■■□□□ 1.1
UPK3AO75631 DDX42-201ENST00000359353 2783 ntTSL 5 BASIC21.92■■□□□ 1.1
UPK3AO75631 ABHD12-202ENST00000376542 1725 ntTSL 1 (best) BASIC21.92■■□□□ 1.1
UPK3AO75631 FKBP1A-204ENST00000400137 1622 ntAPPRIS P1 TSL 1 (best) BASIC21.91■■□□□ 1.1
UPK3AO75631 ST6GALNAC6-204ENST00000373144 2406 ntAPPRIS ALT1 TSL 1 (best) BASIC21.91■■□□□ 1.1
UPK3AO75631 BTBD6-204ENST00000463376 2195 ntAPPRIS ALT2 TSL 2 BASIC21.91■■□□□ 1.1
UPK3AO75631 DLX2-202ENST00000466293 1852 ntTSL 2 BASIC21.91■■□□□ 1.1
UPK3AO75631 PPAN-202ENST00000393793 1575 ntTSL 5 BASIC21.91■■□□□ 1.1
UPK3AO75631 NREP-202ENST00000379671 2581 ntAPPRIS P1 TSL 1 (best) BASIC21.91■■□□□ 1.1
UPK3AO75631 BAMBI-201ENST00000375533 1877 ntAPPRIS P1 TSL 1 (best) BASIC21.9■■□□□ 1.1
UPK3AO75631 C12orf75-201ENST00000443585 1366 ntAPPRIS P1 TSL 2 BASIC21.9■■□□□ 1.1
UPK3AO75631 MRPL51-201ENST00000229238 1234 ntAPPRIS P1 TSL 1 (best) BASIC21.9■■□□□ 1.1
UPK3AO75631 AC126177.7-201ENST00000547904 679 ntBASIC21.9■■□□□ 1.1
UPK3AO75631 FEZ2-204ENST00000405912 1931 ntTSL 1 (best) BASIC21.9■■□□□ 1.1
UPK3AO75631 ARHGEF7-205ENST00000375739 5375 ntTSL 1 (best) BASIC21.9■■□□□ 1.1
UPK3AO75631 PDK1-202ENST00000392571 1515 ntAPPRIS ALT2 TSL 1 (best) BASIC21.9■■□□□ 1.1
UPK3AO75631 CRTAP-202ENST00000449224 1811 ntAPPRIS ALT2 TSL 2 BASIC21.9■■□□□ 1.1
UPK3AO75631 SH3GL1-201ENST00000269886 2516 ntAPPRIS P1 TSL 1 (best) BASIC21.89■■□□□ 1.1
UPK3AO75631 IZUMO4-202ENST00000395301 1021 ntAPPRIS ALT2 TSL 1 (best) BASIC21.89■■□□□ 1.09
UPK3AO75631 TBX2-AS1-202ENST00000589814 539 ntTSL 3 BASIC21.89■■□□□ 1.09
UPK3AO75631 SOD3-201ENST00000382120 1526 ntAPPRIS P1 TSL 1 (best) BASIC21.89■■□□□ 1.09
UPK3AO75631 KLF3-AS1-202ENST00000440181 2368 ntTSL 2 BASIC21.89■■□□□ 1.09
UPK3AO75631 SPG21-201ENST00000204566 1822 ntAPPRIS P1 TSL 1 (best) BASIC21.88■■□□□ 1.09
UPK3AO75631 PPP1R14C-201ENST00000361131 2152 ntAPPRIS P1 TSL 1 (best) BASIC21.88■■□□□ 1.09
UPK3AO75631 LDLRAD3-203ENST00000528989 1879 ntTSL 1 (best) BASIC21.88■■□□□ 1.09
UPK3AO75631 RNF175-201ENST00000347063 1604 ntAPPRIS P1 TSL 1 (best) BASIC21.88■■□□□ 1.09
UPK3AO75631 SKOR2-203ENST00000620245 3048 ntAPPRIS ALT2 TSL 5 BASIC21.87■■□□□ 1.09
UPK3AO75631 CEP120-209ENST00000515110 606 ntTSL 3 BASIC21.87■■□□□ 1.09
UPK3AO75631 AC060814.1-201ENST00000554326 538 ntBASIC21.87■■□□□ 1.09
UPK3AO75631 TTC39C-209ENST00000584250 1048 ntTSL 1 (best) BASIC21.87■■□□□ 1.09
UPK3AO75631 GATA2-AS1-202ENST00000468377 1578 ntTSL 2 BASIC21.87■■□□□ 1.09
UPK3AO75631 AP004609.3-201ENST00000610705 1884 ntBASIC21.86■■□□□ 1.09
UPK3AO75631 EIF5A-208ENST00000573542 1089 ntAPPRIS P1 TSL 2 BASIC21.86■■□□□ 1.09
UPK3AO75631 AC022413.1-201ENST00000624602 984 ntBASIC21.86■■□□□ 1.09
UPK3AO75631 NELFB-201ENST00000343053 2698 ntAPPRIS ALT2 TSL 1 (best) BASIC21.85■■□□□ 1.09
UPK3AO75631 DNAH9-209ENST00000579828 1986 ntTSL 2 BASIC21.85■■□□□ 1.09
UPK3AO75631 TMEM114-202ENST00000568335 899 ntTSL 3 BASIC21.85■■□□□ 1.09
UPK3AO75631 BLOC1S3-202ENST00000587722 732 ntAPPRIS P1 BASIC21.85■■□□□ 1.09
UPK3AO75631 MORF4L1-202ENST00000379535 2274 ntTSL 2 BASIC21.85■■□□□ 1.09
UPK3AO75631 MBOAT7-201ENST00000245615 2529 ntAPPRIS P1 TSL 1 (best) BASIC21.84■■□□□ 1.09
UPK3AO75631 PMS1-220ENST00000618056 1468 ntTSL 5 BASIC21.84■■□□□ 1.09
UPK3AO75631 UBE2J2-202ENST00000349431 1733 ntAPPRIS P1 TSL 1 (best) BASIC21.84■■□□□ 1.09
UPK3AO75631 ABHD17AP3-201ENST00000503096 1137 ntBASIC21.84■■□□□ 1.09
UPK3AO75631 PQLC3-201ENST00000295083 1830 ntAPPRIS P1 TSL 1 (best) BASIC21.84■■□□□ 1.09
UPK3AO75631 SP5-201ENST00000375281 2033 ntAPPRIS P1 TSL 1 (best) BASIC21.84■■□□□ 1.09
UPK3AO75631 HSF1-204ENST00000528838 2142 ntAPPRIS P1 TSL 1 (best) BASIC21.83■■□□□ 1.09
UPK3AO75631 FGF20-201ENST00000180166 1688 ntAPPRIS P1 TSL 1 (best) BASIC21.83■■□□□ 1.09
Retrieved 100 of 98,524 protein–RNA pairs in 20.1 ms