Protein–RNA interactions for Protein: O43542

XRCC3, DNA repair protein XRCC3, humanhuman

Predictions only

Length 346 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
XRCC3O43542 MED17-227ENST00000640521 2047 ntTSL 5 BASIC20.97■□□□□ 0.95
XRCC3O43542 WHAMMP3-201ENST00000611636 1609 ntBASIC20.96■□□□□ 0.95
XRCC3O43542 RAP2A-201ENST00000245304 5487 ntAPPRIS P1 TSL 1 (best) BASIC20.96■□□□□ 0.95
XRCC3O43542 PCOLCE2-201ENST00000295992 2021 ntAPPRIS P1 TSL 1 (best) BASIC20.96■□□□□ 0.95
XRCC3O43542 PSMG4-205ENST00000419065 629 ntTSL 2 BASIC20.96■□□□□ 0.95
XRCC3O43542 SIN3B-209ENST00000596802 2556 ntTSL 1 (best) BASIC20.96■□□□□ 0.95
XRCC3O43542 CRIM1-201ENST00000280527 5912 ntAPPRIS P1 TSL 1 (best) BASIC20.96■□□□□ 0.95
XRCC3O43542 CBLN2-209ENST00000585159 2406 ntAPPRIS P1 TSL 1 (best) BASIC20.96■□□□□ 0.95
XRCC3O43542 ZNRF1-201ENST00000320619 2479 ntTSL 1 (best) BASIC20.96■□□□□ 0.95
XRCC3O43542 PPP1R3F-205ENST00000495799 1537 ntTSL 1 (best) BASIC20.95■□□□□ 0.94
XRCC3O43542 GPR25-201ENST00000304244 1224 ntAPPRIS P1 BASIC20.95■□□□□ 0.94
XRCC3O43542 SRPK3-205ENST00000393786 1900 ntAPPRIS ALT2 TSL 1 (best) BASIC20.95■□□□□ 0.94
XRCC3O43542 FBXL6-201ENST00000331890 1785 ntAPPRIS P3 TSL 1 (best) BASIC20.95■□□□□ 0.94
XRCC3O43542 ST7L-206ENST00000369666 1815 ntTSL 1 (best) BASIC20.94■□□□□ 0.94
XRCC3O43542 PEX26-202ENST00000399744 1672 ntAPPRIS P1 TSL 1 (best) BASIC20.94■□□□□ 0.94
XRCC3O43542 FTCDNL1-201ENST00000416668 944 ntTSL 1 (best) BASIC20.94■□□□□ 0.94
XRCC3O43542 BIN1-205ENST00000351659 2365 ntTSL 1 (best) BASIC20.94■□□□□ 0.94
XRCC3O43542 GSR-205ENST00000541648 1410 ntTSL 1 (best) BASIC20.94■□□□□ 0.94
XRCC3O43542 CACNA1H-201ENST00000348261 8208 ntAPPRIS P4 TSL 1 (best) BASIC20.94■□□□□ 0.94
XRCC3O43542 ATAD3B-201ENST00000308647 2448 ntAPPRIS P1 TSL 1 (best) BASIC20.94■□□□□ 0.94
XRCC3O43542 EZH2-208ENST00000483967 2466 ntAPPRIS ALT1 TSL 2 BASIC20.94■□□□□ 0.94
XRCC3O43542 IRX4-202ENST00000505790 2538 ntAPPRIS P1 TSL 1 (best) BASIC20.94■□□□□ 0.94
XRCC3O43542 DYRK2-203ENST00000393555 2209 ntAPPRIS ALT1 TSL 1 (best) BASIC20.93■□□□□ 0.94
XRCC3O43542 MAD2L2-205ENST00000376669 864 ntTSL 3 BASIC20.93■□□□□ 0.94
XRCC3O43542 ZFAND2B-204ENST00000409217 886 ntTSL 2 BASIC20.93■□□□□ 0.94
XRCC3O43542 RAX2-202ENST00000555978 2145 ntAPPRIS P1 TSL 1 (best) BASIC20.93■□□□□ 0.94
XRCC3O43542 AC006455.5-202ENST00000615248 2284 ntTSL 1 (best) BASIC20.93■□□□□ 0.94
XRCC3O43542 LHX3-201ENST00000371746 2403 ntAPPRIS P1 TSL 1 (best) BASIC20.93■□□□□ 0.94
XRCC3O43542 HAS2-AS1-201ENST00000514180 1656 ntTSL 1 (best) BASIC20.93■□□□□ 0.94
XRCC3O43542 ARHGEF35-201ENST00000378115 2431 ntAPPRIS P1 TSL 1 (best) BASIC20.92■□□□□ 0.94
XRCC3O43542 R3HDM4-203ENST00000587975 1765 ntTSL 3 BASIC20.92■□□□□ 0.94
XRCC3O43542 MAP3K5-201ENST00000359015 5197 ntAPPRIS P1 TSL 1 (best) BASIC20.91■□□□□ 0.94
XRCC3O43542 VSTM2L-202ENST00000373461 1959 ntAPPRIS P1 TSL 1 (best) BASIC20.91■□□□□ 0.94
XRCC3O43542 PREB-202ENST00000406567 1910 ntTSL 5 BASIC20.91■□□□□ 0.94
XRCC3O43542 TSGA13-204ENST00000456951 2046 ntAPPRIS P2 TSL 2 BASIC20.91■□□□□ 0.94
XRCC3O43542 INAFM1-201ENST00000552360 1255 ntAPPRIS P1 BASIC20.91■□□□□ 0.94
XRCC3O43542 AC097358.2-201ENST00000607541 1159 ntBASIC20.91■□□□□ 0.94
XRCC3O43542 ABHD17C-201ENST00000258884 2368 ntAPPRIS P1 TSL 1 (best) BASIC20.9■□□□□ 0.94
XRCC3O43542 RUNX2-210ENST00000576263 2256 ntTSL 5 BASIC20.9■□□□□ 0.94
XRCC3O43542 APBA3-201ENST00000316757 2075 ntAPPRIS P1 TSL 1 (best) BASIC20.9■□□□□ 0.94
XRCC3O43542 AL357033.1-201ENST00000370520 1933 ntTSL 2 BASIC20.9■□□□□ 0.94
XRCC3O43542 P2RX4-203ENST00000359949 1836 ntTSL 5 BASIC20.9■□□□□ 0.94
XRCC3O43542 NAA50-207ENST00000493900 962 ntAPPRIS ALT1 TSL 2 BASIC20.9■□□□□ 0.94
XRCC3O43542 MIR6090-201ENST00000622481 60 ntBASIC20.9■□□□□ 0.94
XRCC3O43542 RARA-202ENST00000394081 2285 ntTSL 1 (best) BASIC20.9■□□□□ 0.94
XRCC3O43542 SMOX-202ENST00000305958 2233 ntAPPRIS P1 TSL 1 (best) BASIC20.9■□□□□ 0.94
XRCC3O43542 BIN1-206ENST00000352848 2209 ntTSL 1 (best) BASIC20.9■□□□□ 0.94
XRCC3O43542 AC022211.4-201ENST00000625094 2161 ntBASIC20.9■□□□□ 0.94
XRCC3O43542 KRT72-201ENST00000293745 2015 ntAPPRIS P1 TSL 1 (best) BASIC20.9■□□□□ 0.94
XRCC3O43542 C16orf72-201ENST00000327827 5953 ntAPPRIS P1 TSL 1 (best) BASIC20.9■□□□□ 0.94
XRCC3O43542 AL139125.2-201ENST00000623134 1869 ntBASIC20.9■□□□□ 0.94
XRCC3O43542 ANKRD54-201ENST00000215941 2184 ntAPPRIS P1 TSL 1 (best) BASIC20.89■□□□□ 0.94
XRCC3O43542 TBL2-222ENST00000610724 2165 ntTSL 5 BASIC20.89■□□□□ 0.94
XRCC3O43542 KLF15-201ENST00000296233 2574 ntAPPRIS P1 TSL 1 (best) BASIC20.89■□□□□ 0.93
XRCC3O43542 ZNF821-201ENST00000313565 1874 ntTSL 1 (best) BASIC20.89■□□□□ 0.93
XRCC3O43542 SLC25A10-202ENST00000350690 1885 ntAPPRIS P1 TSL 1 (best) BASIC20.89■□□□□ 0.93
XRCC3O43542 C14orf80-203ENST00000354560 1553 ntAPPRIS ALT2 TSL 1 (best) BASIC20.89■□□□□ 0.93
XRCC3O43542 PPAN-202ENST00000393793 1575 ntTSL 5 BASIC20.89■□□□□ 0.93
XRCC3O43542 RINL-208ENST00000598904 1846 ntAPPRIS P3 TSL 5 BASIC20.88■□□□□ 0.93
XRCC3O43542 NSMCE4A-201ENST00000369017 1224 ntTSL 1 (best) BASIC20.88■□□□□ 0.93
XRCC3O43542 GSX2-202ENST00000503800 1181 ntTSL 5 BASIC20.88■□□□□ 0.93
XRCC3O43542 TXNL4A-208ENST00000588162 752 ntTSL 2 BASIC20.88■□□□□ 0.93
XRCC3O43542 FSD1-204ENST00000597590 1634 ntTSL 5 BASIC20.88■□□□□ 0.93
XRCC3O43542 GATA2-AS1-202ENST00000468377 1578 ntTSL 2 BASIC20.88■□□□□ 0.93
XRCC3O43542 AC138932.3-201ENST00000567634 1902 ntBASIC20.88■□□□□ 0.93
XRCC3O43542 MAZ-208ENST00000563402 1461 ntTSL 5 BASIC20.88■□□□□ 0.93
XRCC3O43542 MAZ-210ENST00000566906 1455 ntTSL 5 BASIC20.88■□□□□ 0.93
XRCC3O43542 TWF2-201ENST00000305533 1718 ntAPPRIS P1 TSL 1 (best) BASIC20.87■□□□□ 0.93
XRCC3O43542 LINC02323-201ENST00000559946 1603 ntTSL 3 BASIC20.87■□□□□ 0.93
XRCC3O43542 PPP1R14B-201ENST00000309318 982 ntAPPRIS P1 TSL 1 (best) BASIC20.87■□□□□ 0.93
XRCC3O43542 AC005559.1-201ENST00000589661 871 ntBASIC20.87■□□□□ 0.93
XRCC3O43542 RAB11FIP1-203ENST00000522727 1866 ntTSL 1 (best) BASIC20.87■□□□□ 0.93
XRCC3O43542 CCDC106-202ENST00000586790 2162 ntAPPRIS P1 TSL 1 (best) BASIC20.87■□□□□ 0.93
XRCC3O43542 AP2M1-202ENST00000382456 2091 ntAPPRIS ALT1 TSL 1 (best) BASIC20.87■□□□□ 0.93
XRCC3O43542 SLC30A3-201ENST00000233535 2260 ntAPPRIS P1 TSL 1 (best) BASIC20.87■□□□□ 0.93
XRCC3O43542 AKT1-203ENST00000407796 2710 ntAPPRIS P1 TSL 1 (best) BASIC20.86■□□□□ 0.93
XRCC3O43542 ATP6V0A2-209ENST00000613625 1620 ntTSL 1 (best) BASIC20.86■□□□□ 0.93
XRCC3O43542 TMEM251-202ENST00000415050 1303 ntTSL 2 BASIC20.86■□□□□ 0.93
XRCC3O43542 NOCT-201ENST00000280614 1952 ntAPPRIS P1 TSL 1 (best) BASIC20.86■□□□□ 0.93
XRCC3O43542 PTPN2-202ENST00000327283 1706 ntAPPRIS P1 TSL 1 (best) BASIC20.86■□□□□ 0.93
XRCC3O43542 ABHD12-202ENST00000376542 1725 ntTSL 1 (best) BASIC20.86■□□□□ 0.93
XRCC3O43542 SNF8-202ENST00000502492 2319 ntAPPRIS P3 TSL 1 (best) BASIC20.86■□□□□ 0.93
XRCC3O43542 ARRB2-210ENST00000572457 1660 ntTSL 5 BASIC20.85■□□□□ 0.93
XRCC3O43542 RABGGTA-202ENST00000399409 2265 ntAPPRIS P1 TSL 1 (best) BASIC20.85■□□□□ 0.93
XRCC3O43542 SYT7-203ENST00000539008 2061 ntTSL 5 BASIC20.84■□□□□ 0.93
XRCC3O43542 SCTR-201ENST00000019103 1865 ntAPPRIS P1 TSL 1 (best) BASIC20.84■□□□□ 0.93
XRCC3O43542 RNF19B-203ENST00000373456 2560 ntAPPRIS P3 TSL 1 (best) BASIC20.84■□□□□ 0.93
XRCC3O43542 PEX7-203ENST00000541292 945 ntTSL 5 BASIC20.84■□□□□ 0.93
XRCC3O43542 CALM3-209ENST00000597743 577 ntTSL 4 BASIC20.84■□□□□ 0.93
XRCC3O43542 TMEM150C-201ENST00000449862 1990 ntAPPRIS P1 TSL 1 (best) BASIC20.84■□□□□ 0.93
XRCC3O43542 TMEM202-AS1-202ENST00000565181 2325 ntBASIC20.84■□□□□ 0.93
XRCC3O43542 P4HA3-201ENST00000331597 2274 ntAPPRIS P1 TSL 1 (best) BASIC20.84■□□□□ 0.93
XRCC3O43542 NR2F6-201ENST00000291442 2404 ntAPPRIS P1 TSL 1 (best) BASIC20.84■□□□□ 0.93
XRCC3O43542 SHISA5-201ENST00000296444 2369 ntTSL 1 (best) BASIC20.83■□□□□ 0.93
XRCC3O43542 ZNF747-203ENST00000568028 1511 ntAPPRIS P1 TSL 2 BASIC20.83■□□□□ 0.93
XRCC3O43542 AC113189.4-201ENST00000575331 5553 ntTSL 1 (best) BASIC20.83■□□□□ 0.93
XRCC3O43542 ZNF365-206ENST00000395255 1674 ntTSL 1 (best) BASIC20.83■□□□□ 0.93
XRCC3O43542 C1QTNF1-206ENST00000579760 1672 ntAPPRIS P1 TSL 1 (best) BASIC20.83■□□□□ 0.93
XRCC3O43542 C2orf88-204ENST00000409870 1441 ntAPPRIS P1 TSL 2 BASIC20.83■□□□□ 0.93
XRCC3O43542 SH2D3A-202ENST00000437152 2013 ntTSL 2 BASIC20.83■□□□□ 0.92
Retrieved 100 of 98,524 protein–RNA pairs in 11.3 ms