Protein–RNA interactions for Protein: A0A0B4J263

TRAV39, T-cell receptor alpha variable 39 (Fragment), humanhuman

Predictions only

Length 110 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
TRAV39A0A0B4J263 FAM220A-206ENST00000616824 2211 ntTSL 1 (best) BASIC20.47■□□□□ 0.87
TRAV39A0A0B4J263 BICDL2-203ENST00000572449 1984 ntAPPRIS P1 TSL 5 BASIC20.47■□□□□ 0.87
TRAV39A0A0B4J263 GADD45G-201ENST00000252506 1065 ntAPPRIS P1 TSL 1 (best) BASIC20.47■□□□□ 0.87
TRAV39A0A0B4J263 TRIM52-AS1-203ENST00000509252 529 ntTSL 3 BASIC20.47■□□□□ 0.87
TRAV39A0A0B4J263 TSGA13-204ENST00000456951 2046 ntAPPRIS P2 TSL 2 BASIC20.47■□□□□ 0.87
TRAV39A0A0B4J263 AC092803.2-201ENST00000564287 1899 ntBASIC20.47■□□□□ 0.87
TRAV39A0A0B4J263 NRG2-203ENST00000340391 1944 ntTSL 5 BASIC20.47■□□□□ 0.87
TRAV39A0A0B4J263 ANKRD53-201ENST00000272421 2185 ntAPPRIS P3 TSL 1 (best) BASIC20.46■□□□□ 0.87
TRAV39A0A0B4J263 P2RY2-202ENST00000393596 2174 ntAPPRIS P1 TSL 1 (best) BASIC20.46■□□□□ 0.87
TRAV39A0A0B4J263 KLF3-AS1-202ENST00000440181 2368 ntTSL 2 BASIC20.46■□□□□ 0.87
TRAV39A0A0B4J263 SLC15A3-201ENST00000227880 2115 ntAPPRIS P1 TSL 1 (best) BASIC20.46■□□□□ 0.87
TRAV39A0A0B4J263 PDCD2-209ENST00000542896 1082 ntTSL 2 BASIC20.46■□□□□ 0.87
TRAV39A0A0B4J263 GDI1-215ENST00000630693 786 ntTSL 4 BASIC20.46■□□□□ 0.87
TRAV39A0A0B4J263 CSNK1E-203ENST00000396832 2791 ntAPPRIS P1 TSL 1 (best) BASIC20.46■□□□□ 0.87
TRAV39A0A0B4J263 CAPN10-204ENST00000354082 1999 ntTSL 1 (best) BASIC20.46■□□□□ 0.87
TRAV39A0A0B4J263 AC145676.1-201ENST00000514988 2004 ntBASIC20.46■□□□□ 0.87
TRAV39A0A0B4J263 PPM1B-202ENST00000345249 1713 ntTSL 1 (best) BASIC20.45■□□□□ 0.86
TRAV39A0A0B4J263 CAMK1D-203ENST00000615792 1725 ntTSL 5 BASIC20.45■□□□□ 0.86
TRAV39A0A0B4J263 KHSRP-201ENST00000398148 2993 ntAPPRIS P2 TSL 1 (best) BASIC20.45■□□□□ 0.86
TRAV39A0A0B4J263 MAZ-202ENST00000322945 2532 ntAPPRIS ALT2 TSL 1 (best) BASIC20.45■□□□□ 0.86
TRAV39A0A0B4J263 CIB2-202ENST00000539011 1511 ntTSL 1 (best) BASIC20.45■□□□□ 0.86
TRAV39A0A0B4J263 LINC01896-206ENST00000575722 1256 ntTSL 2 BASIC20.45■□□□□ 0.86
TRAV39A0A0B4J263 MIR3648-2-201ENST00000581792 180 ntBASIC20.45■□□□□ 0.86
TRAV39A0A0B4J263 MIR3648-1-201ENST00000615959 180 ntBASIC20.45■□□□□ 0.86
TRAV39A0A0B4J263 COPZ2-210ENST00000621465 895 ntAPPRIS P1 TSL 1 (best) BASIC20.45■□□□□ 0.86
TRAV39A0A0B4J263 LSM6-202ENST00000502781 1352 ntAPPRIS P1 TSL 1 (best) BASIC20.45■□□□□ 0.86
TRAV39A0A0B4J263 DVL1-201ENST00000378888 3239 ntAPPRIS ALT1 TSL 5 BASIC20.44■□□□□ 0.86
TRAV39A0A0B4J263 ADAMTSL5-202ENST00000395467 1533 ntTSL 5 BASIC20.44■□□□□ 0.86
TRAV39A0A0B4J263 PPP1R14C-201ENST00000361131 2152 ntAPPRIS P1 TSL 1 (best) BASIC20.44■□□□□ 0.86
TRAV39A0A0B4J263 BTBD6-203ENST00000392554 2176 ntAPPRIS P2 TSL 1 (best) BASIC20.44■□□□□ 0.86
TRAV39A0A0B4J263 HSD17B1-201ENST00000225929 1265 ntAPPRIS ALT2 TSL 2 BASIC20.44■□□□□ 0.86
TRAV39A0A0B4J263 AGPS-202ENST00000409888 815 ntTSL 4 BASIC20.44■□□□□ 0.86
TRAV39A0A0B4J263 AC187653.1-201ENST00000506382 702 ntAPPRIS P1 TSL 5 BASIC20.44■□□□□ 0.86
TRAV39A0A0B4J263 AC016575.1-201ENST00000607026 382 ntBASIC20.44■□□□□ 0.86
TRAV39A0A0B4J263 AC148477.6-201ENST00000623746 465 ntBASIC20.44■□□□□ 0.86
TRAV39A0A0B4J263 AC013394.1-201ENST00000629685 808 ntAPPRIS P1 TSL 5 BASIC20.44■□□□□ 0.86
TRAV39A0A0B4J263 KLC1-203ENST00000347839 2271 ntTSL 5 BASIC20.44■□□□□ 0.86
TRAV39A0A0B4J263 EMC10-206ENST00000598585 1610 ntAPPRIS ALT2 TSL 5 BASIC20.44■□□□□ 0.86
TRAV39A0A0B4J263 TSPOAP1-AS1-205ENST00000580022 2337 ntTSL 2 BASIC20.43■□□□□ 0.86
TRAV39A0A0B4J263 PTPA-202ENST00000347048 1989 ntTSL 1 (best) BASIC20.43■□□□□ 0.86
TRAV39A0A0B4J263 AURKAIP1-203ENST00000338370 1072 ntAPPRIS P1 TSL 1 (best) BASIC20.43■□□□□ 0.86
TRAV39A0A0B4J263 AQP1-203ENST00000409899 1009 ntTSL 1 (best) BASIC20.43■□□□□ 0.86
TRAV39A0A0B4J263 R3HCC1-201ENST00000265806 1773 ntAPPRIS ALT2 TSL 1 (best) BASIC20.43■□□□□ 0.86
TRAV39A0A0B4J263 C12orf75-201ENST00000443585 1366 ntAPPRIS P1 TSL 2 BASIC20.43■□□□□ 0.86
TRAV39A0A0B4J263 EPB41L4A-AS2-201ENST00000623705 1396 ntBASIC20.43■□□□□ 0.86
TRAV39A0A0B4J263 GTF2IP1-204ENST00000616377 2632 ntTSL 2 BASIC20.42■□□□□ 0.86
TRAV39A0A0B4J263 GTF2E2-201ENST00000355904 1762 ntAPPRIS P1 TSL 1 (best) BASIC20.42■□□□□ 0.86
TRAV39A0A0B4J263 SERF1A-202ENST00000354833 1889 ntTSL 1 (best) BASIC20.42■□□□□ 0.86
TRAV39A0A0B4J263 SERF1B-201ENST00000380750 1889 ntTSL 1 (best) BASIC20.42■□□□□ 0.86
TRAV39A0A0B4J263 CMPK2-203ENST00000458098 1224 ntTSL 1 (best) BASIC20.42■□□□□ 0.86
TRAV39A0A0B4J263 CLTA-207ENST00000470744 1102 ntTSL 2 BASIC20.42■□□□□ 0.86
TRAV39A0A0B4J263 METRNL-202ENST00000570778 967 ntTSL 5 BASIC20.42■□□□□ 0.86
TRAV39A0A0B4J263 GYG2-205ENST00000398806 1956 ntAPPRIS ALT2 TSL 1 (best) BASIC20.42■□□□□ 0.86
TRAV39A0A0B4J263 JAG2-202ENST00000347004 5720 ntTSL 1 (best) BASIC20.42■□□□□ 0.86
TRAV39A0A0B4J263 IFFO2-203ENST00000455833 6188 ntAPPRIS P1 TSL 5 BASIC20.41■□□□□ 0.86
TRAV39A0A0B4J263 RPS20-211ENST00000524349 752 ntTSL 1 (best) BASIC20.41■□□□□ 0.86
TRAV39A0A0B4J263 KAZN-207ENST00000503743 1475 ntTSL 1 (best) BASIC20.41■□□□□ 0.86
TRAV39A0A0B4J263 AL359258.2-201ENST00000564063 1566 ntBASIC20.41■□□□□ 0.86
TRAV39A0A0B4J263 YBX2-201ENST00000007699 1590 ntAPPRIS P1 TSL 1 (best) BASIC20.41■□□□□ 0.86
TRAV39A0A0B4J263 PQLC3-201ENST00000295083 1830 ntAPPRIS P1 TSL 1 (best) BASIC20.41■□□□□ 0.86
TRAV39A0A0B4J263 SRP68-202ENST00000539137 2386 ntTSL 2 BASIC20.41■□□□□ 0.86
TRAV39A0A0B4J263 SHISA5-201ENST00000296444 2369 ntTSL 1 (best) BASIC20.4■□□□□ 0.86
TRAV39A0A0B4J263 EVA1C-201ENST00000300255 1998 ntAPPRIS P3 TSL 1 (best) BASIC20.4■□□□□ 0.86
TRAV39A0A0B4J263 KCNG2-201ENST00000316249 1401 ntAPPRIS P1 TSL 1 (best) BASIC20.4■□□□□ 0.86
TRAV39A0A0B4J263 ECHDC3-201ENST00000379215 1649 ntAPPRIS P1 TSL 1 (best) BASIC20.4■□□□□ 0.86
TRAV39A0A0B4J263 ALG2-203ENST00000476832 1880 ntAPPRIS P1 TSL 1 (best) BASIC20.4■□□□□ 0.86
TRAV39A0A0B4J263 PLEKHF2-202ENST00000519516 1144 ntAPPRIS P1 TSL 3 BASIC20.4■□□□□ 0.86
TRAV39A0A0B4J263 RFWD2-201ENST00000308769 2124 ntTSL 1 (best) BASIC20.39■□□□□ 0.86
TRAV39A0A0B4J263 VSTM2L-202ENST00000373461 1959 ntAPPRIS P1 TSL 1 (best) BASIC20.39■□□□□ 0.86
TRAV39A0A0B4J263 NRM-201ENST00000259953 1755 ntAPPRIS P2 TSL 2 BASIC20.39■□□□□ 0.86
TRAV39A0A0B4J263 CCDC136-202ENST00000378685 1689 ntAPPRIS ALT2 TSL 2 BASIC20.39■□□□□ 0.86
TRAV39A0A0B4J263 KRT18-201ENST00000388835 1562 ntAPPRIS P1 TSL 1 (best) BASIC20.39■□□□□ 0.85
TRAV39A0A0B4J263 WDR86-204ENST00000477459 1428 ntTSL 2 BASIC20.39■□□□□ 0.85
TRAV39A0A0B4J263 PDF-201ENST00000288022 1158 ntAPPRIS P1 TSL 1 (best) BASIC20.39■□□□□ 0.85
TRAV39A0A0B4J263 MIR7108-201ENST00000614319 87 ntBASIC20.39■□□□□ 0.85
TRAV39A0A0B4J263 KAZALD1-201ENST00000370200 1913 ntAPPRIS P1 TSL 1 (best) BASIC20.39■□□□□ 0.85
TRAV39A0A0B4J263 TSPAN10-203ENST00000574882 1837 ntAPPRIS P2 TSL 1 (best) BASIC20.39■□□□□ 0.85
TRAV39A0A0B4J263 OTUD5-201ENST00000156084 2740 ntAPPRIS P3 TSL 1 (best) BASIC20.39■□□□□ 0.85
TRAV39A0A0B4J263 MED25-210ENST00000612854 801 ntTSL 5 BASIC20.38■□□□□ 0.85
TRAV39A0A0B4J263 MED25-213ENST00000620467 1293 ntTSL 1 (best) BASIC20.38■□□□□ 0.85
TRAV39A0A0B4J263 MED25-214ENST00000622402 642 ntTSL 5 BASIC20.38■□□□□ 0.85
TRAV39A0A0B4J263 AC073111.5-206ENST00000642087 859 ntAPPRIS P1 BASIC20.38■□□□□ 0.85
TRAV39A0A0B4J263 TMEM125-202ENST00000439858 1786 ntAPPRIS P1 TSL 2 BASIC20.38■□□□□ 0.85
TRAV39A0A0B4J263 SNX5-201ENST00000377759 2270 ntAPPRIS P1 TSL 1 (best) BASIC20.38■□□□□ 0.85
TRAV39A0A0B4J263 U2AF1-204ENST00000459639 1675 ntTSL 1 (best) BASIC20.38■□□□□ 0.85
TRAV39A0A0B4J263 U2AF1L5-204ENST00000623375 1675 ntTSL 1 (best) BASIC20.38■□□□□ 0.85
TRAV39A0A0B4J263 GAL3ST3-203ENST00000527878 1599 ntAPPRIS P1 TSL 1 (best) BASIC20.38■□□□□ 0.85
TRAV39A0A0B4J263 NREP-202ENST00000379671 2581 ntAPPRIS P1 TSL 1 (best) BASIC20.38■□□□□ 0.85
TRAV39A0A0B4J263 UBE2J2-202ENST00000349431 1733 ntAPPRIS P1 TSL 1 (best) BASIC20.37■□□□□ 0.85
TRAV39A0A0B4J263 PVT1-219ENST00000523427 938 ntTSL 3 BASIC20.37■□□□□ 0.85
TRAV39A0A0B4J263 CABP1-202ENST00000316803 1658 ntTSL 1 (best) BASIC20.37■□□□□ 0.85
TRAV39A0A0B4J263 CDK9-201ENST00000373264 2463 ntAPPRIS P1 TSL 1 (best) BASIC20.37■□□□□ 0.85
TRAV39A0A0B4J263 GCLC-209ENST00000514004 2356 ntTSL 1 (best) BASIC20.37■□□□□ 0.85
TRAV39A0A0B4J263 MBOAT7-201ENST00000245615 2529 ntAPPRIS P1 TSL 1 (best) BASIC20.36■□□□□ 0.85
TRAV39A0A0B4J263 C2CD4D-201ENST00000454109 1757 ntAPPRIS P1 TSL 2 BASIC20.36■□□□□ 0.85
TRAV39A0A0B4J263 ERN1-208ENST00000606895 2068 ntBASIC20.36■□□□□ 0.85
TRAV39A0A0B4J263 SP5-201ENST00000375281 2033 ntAPPRIS P1 TSL 1 (best) BASIC20.36■□□□□ 0.85
TRAV39A0A0B4J263 KIF13A-207ENST00000502704 1330 ntTSL 1 (best) BASIC20.36■□□□□ 0.85
TRAV39A0A0B4J263 TYMP-201ENST00000252029 1630 ntAPPRIS P3 TSL 1 (best) BASIC20.36■□□□□ 0.85
TRAV39A0A0B4J263 TYMP-203ENST00000395680 1608 ntAPPRIS P3 TSL 1 (best) BASIC20.36■□□□□ 0.85
Retrieved 100 of 98,524 protein–RNA pairs in 45.7 ms