Protein–RNA interactions for Protein: Q9ULL8

SHROOM4, Protein Shroom4, humanhuman

Predictions only

Length 1,493 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SHROOM4Q9ULL8 ODF3B-204ENST00000405135 917 ntTSL 5 BASIC33.63■■■□□ 2.97
SHROOM4Q9ULL8 CIPC-205ENST00000555437 566 ntTSL 3 BASIC33.63■■■□□ 2.97
SHROOM4Q9ULL8 AL513190.1-201ENST00000621254 727 ntBASIC33.63■■■□□ 2.97
SHROOM4Q9ULL8 CAV2-201ENST00000222693 3301 ntAPPRIS P1 TSL 1 (best) BASIC33.63■■■□□ 2.97
SHROOM4Q9ULL8 PPM1B-201ENST00000282412 2606 ntAPPRIS P4 TSL 1 (best) BASIC33.63■■■□□ 2.97
SHROOM4Q9ULL8 DFNA5-203ENST00000409970 2005 ntTSL 5 BASIC33.63■■■□□ 2.97
SHROOM4Q9ULL8 PTBP1-220ENST00000627714 2201 ntTSL 5 BASIC33.63■■■□□ 2.97
SHROOM4Q9ULL8 ACSM2A-201ENST00000219054 1988 ntAPPRIS P1 TSL 1 (best) BASIC33.63■■■□□ 2.97
SHROOM4Q9ULL8 MSLN-202ENST00000545450 2162 ntAPPRIS ALT2 TSL 1 (best) BASIC33.63■■■□□ 2.97
SHROOM4Q9ULL8 FAM19A4-201ENST00000295569 2292 ntAPPRIS P1 TSL 1 (best) BASIC33.63■■■□□ 2.97
SHROOM4Q9ULL8 COPE-202ENST00000349893 948 ntTSL 2 BASIC33.63■■■□□ 2.97
SHROOM4Q9ULL8 SLC4A1APP2-201ENST00000424054 1259 ntBASIC33.63■■■□□ 2.97
SHROOM4Q9ULL8 ITGA9-AS1-209ENST00000450990 562 ntTSL 4 BASIC33.63■■■□□ 2.97
SHROOM4Q9ULL8 BX890604.1-208ENST00000490920 726 ntTSL 2 BASIC33.63■■■□□ 2.97
SHROOM4Q9ULL8 BRICD5-202ENST00000562360 783 ntTSL 2 BASIC33.63■■■□□ 2.97
SHROOM4Q9ULL8 LSM12-202ENST00000585388 942 ntTSL 3 BASIC33.63■■■□□ 2.97
SHROOM4Q9ULL8 ORAI2-204ENST00000473939 2493 ntAPPRIS P1 TSL 1 (best) BASIC33.62■■■□□ 2.97
SHROOM4Q9ULL8 LINC00535-201ENST00000501400 1914 ntTSL 1 (best) BASIC33.62■■■□□ 2.97
SHROOM4Q9ULL8 GPAT2P1-202ENST00000471661 1569 ntTSL 2 BASIC33.62■■■□□ 2.97
SHROOM4Q9ULL8 ACADVL-205ENST00000543245 2227 ntTSL 2 BASIC33.62■■■□□ 2.97
SHROOM4Q9ULL8 KRT24-201ENST00000264651 1881 ntAPPRIS P1 TSL 1 (best) BASIC33.62■■■□□ 2.97
SHROOM4Q9ULL8 IRF3-203ENST00000377139 1613 ntAPPRIS P1 TSL 1 (best) BASIC33.62■■■□□ 2.97
SHROOM4Q9ULL8 SEH1L-202ENST00000399892 1846 ntTSL 1 (best) BASIC33.62■■■□□ 2.97
SHROOM4Q9ULL8 C11orf80-203ENST00000525449 1821 ntAPPRIS ALT2 TSL 1 (best) BASIC33.62■■■□□ 2.97
SHROOM4Q9ULL8 LINC02558-202ENST00000436395 298 ntTSL 5 BASIC33.62■■■□□ 2.97
SHROOM4Q9ULL8 HCG4B-203ENST00000450128 991 ntBASIC33.62■■■□□ 2.97
SHROOM4Q9ULL8 MRPL34-205ENST00000600434 793 ntAPPRIS P2 TSL 3 BASIC33.62■■■□□ 2.97
SHROOM4Q9ULL8 GOLGA6L17P-202ENST00000614358 1398 ntBASIC33.62■■■□□ 2.97
SHROOM4Q9ULL8 FIP1L1-203ENST00000358575 2180 ntAPPRIS P4 TSL 2 BASIC33.62■■■□□ 2.97
SHROOM4Q9ULL8 ALKBH4-201ENST00000292566 2105 ntAPPRIS P1 TSL 1 (best) BASIC33.61■■■□□ 2.97
SHROOM4Q9ULL8 PRODH-205ENST00000420436 2034 ntAPPRIS ALT2 TSL 2 BASIC33.61■■■□□ 2.97
SHROOM4Q9ULL8 PARD3-214ENST00000545693 5962 ntAPPRIS ALT2 TSL 1 (best) BASIC33.61■■■□□ 2.97
SHROOM4Q9ULL8 MAPT-210ENST00000535772 5718 ntTSL 5 BASIC33.61■■■□□ 2.97
SHROOM4Q9ULL8 ELK2BP-201ENST00000415014 1224 ntBASIC33.61■■■□□ 2.97
SHROOM4Q9ULL8 AL589923.1-201ENST00000441473 316 ntTSL 5 BASIC33.61■■■□□ 2.97
SHROOM4Q9ULL8 COX14-202ENST00000548985 677 ntAPPRIS P1 TSL 2 BASIC33.61■■■□□ 2.97
SHROOM4Q9ULL8 AC120498.9-201ENST00000339021 3867 ntBASIC33.61■■■□□ 2.97
SHROOM4Q9ULL8 LBHD1-210ENST00000532208 1508 ntAPPRIS P2 TSL 5 BASIC33.61■■■□□ 2.97
SHROOM4Q9ULL8 ADAP1-205ENST00000449296 2093 ntTSL 2 BASIC33.61■■■□□ 2.97
SHROOM4Q9ULL8 LPAR2-201ENST00000407877 1791 ntAPPRIS P1 TSL 1 (best) BASIC33.6■■■□□ 2.97
SHROOM4Q9ULL8 HNRNPK-202ENST00000360384 2038 ntAPPRIS ALT1 TSL 1 (best) BASIC33.6■■■□□ 2.97
SHROOM4Q9ULL8 COQ9-210ENST00000567072 1482 ntTSL 3 BASIC33.6■■■□□ 2.97
SHROOM4Q9ULL8 NUDC-201ENST00000321265 1800 ntAPPRIS P1 TSL 1 (best) BASIC33.6■■■□□ 2.97
SHROOM4Q9ULL8 GPANK1-204ENST00000375900 1814 ntAPPRIS P1 TSL 2 BASIC33.6■■■□□ 2.97
SHROOM4Q9ULL8 RPA2-202ENST00000373909 1162 ntTSL 3 BASIC33.6■■■□□ 2.97
SHROOM4Q9ULL8 MRPL23-201ENST00000381514 919 ntTSL 3 BASIC33.6■■■□□ 2.97
SHROOM4Q9ULL8 CAMKMT-204ENST00000407131 652 ntTSL 3 BASIC33.6■■■□□ 2.97
SHROOM4Q9ULL8 PNKD-204ENST00000436005 978 ntTSL 5 BASIC33.6■■■□□ 2.97
SHROOM4Q9ULL8 TMEM161B-AS1-202ENST00000501715 1101 ntTSL 1 (best) BASIC33.6■■■□□ 2.97
SHROOM4Q9ULL8 AC034243.1-201ENST00000520838 587 ntTSL 2 BASIC33.6■■■□□ 2.97
SHROOM4Q9ULL8 AC067930.3-201ENST00000524808 701 ntTSL 3 BASIC33.6■■■□□ 2.97
SHROOM4Q9ULL8 FAM227B-204ENST00000558594 1139 ntAPPRIS ALT2 TSL 5 BASIC33.6■■■□□ 2.97
SHROOM4Q9ULL8 PDPK2P-202ENST00000562415 1191 ntBASIC33.6■■■□□ 2.97
SHROOM4Q9ULL8 METTL23-203ENST00000586738 1059 ntTSL 5 BASIC33.6■■■□□ 2.97
SHROOM4Q9ULL8 METTL23-205ENST00000588302 925 ntTSL 5 BASIC33.6■■■□□ 2.97
SHROOM4Q9ULL8 AC100803.2-201ENST00000562459 1963 ntBASIC33.6■■■□□ 2.97
SHROOM4Q9ULL8 AL096828.2-201ENST00000567259 1965 ntBASIC33.6■■■□□ 2.97
SHROOM4Q9ULL8 NOTCH2NL-204ENST00000579793 1954 ntAPPRIS ALT2 TSL 2 BASIC33.6■■■□□ 2.97
SHROOM4Q9ULL8 WIPI2-211ENST00000484262 1504 ntTSL 1 (best) BASIC33.6■■■□□ 2.97
SHROOM4Q9ULL8 TTLL9-205ENST00000375938 2623 ntAPPRIS P2 TSL 2 BASIC33.6■■■□□ 2.97
SHROOM4Q9ULL8 NPFFR2-201ENST00000308744 1922 ntTSL 1 (best) BASIC33.6■■■□□ 2.97
SHROOM4Q9ULL8 OGFOD2-212ENST00000538755 1949 ntTSL 1 (best) BASIC33.6■■■□□ 2.97
SHROOM4Q9ULL8 INPP5J-204ENST00000402238 1564 ntTSL 2 BASIC33.6■■■□□ 2.97
SHROOM4Q9ULL8 FAM131A-202ENST00000340957 2421 ntTSL 1 (best) BASIC33.6■■■□□ 2.97
SHROOM4Q9ULL8 PTTG1IP-204ENST00000445724 2497 ntTSL 2 BASIC33.59■■■□□ 2.97
SHROOM4Q9ULL8 NRN1-201ENST00000244766 1624 ntAPPRIS P1 TSL 1 (best) BASIC33.59■■■□□ 2.97
SHROOM4Q9ULL8 TXNRD3-202ENST00000523403 2351 ntAPPRIS ALT2 TSL 2 BASIC33.59■■■□□ 2.97
SHROOM4Q9ULL8 OTUD1-201ENST00000376495 2933 ntAPPRIS P1 BASIC33.59■■■□□ 2.97
SHROOM4Q9ULL8 CD9-202ENST00000382515 1229 ntTSL 5 BASIC33.59■■■□□ 2.97
SHROOM4Q9ULL8 AC108073.2-201ENST00000464002 357 ntBASIC33.59■■■□□ 2.97
SHROOM4Q9ULL8 FAU-209ENST00000531743 697 ntAPPRIS P1 TSL 1 (best) BASIC33.59■■■□□ 2.97
SHROOM4Q9ULL8 AL590999.1-203ENST00000606829 542 ntTSL 4 BASIC33.59■■■□□ 2.97
SHROOM4Q9ULL8 TUBA4A-201ENST00000248437 2162 ntAPPRIS P1 TSL 1 (best) BASIC33.59■■■□□ 2.97
SHROOM4Q9ULL8 KCNH1-210ENST00000640044 1818 ntTSL 1 (best) BASIC33.59■■■□□ 2.97
SHROOM4Q9ULL8 PMPCAP1-201ENST00000508114 1576 ntBASIC33.59■■■□□ 2.97
SHROOM4Q9ULL8 DPF1-203ENST00000414789 1960 ntTSL 2 BASIC33.59■■■□□ 2.97
SHROOM4Q9ULL8 ARMC6-202ENST00000392335 2383 ntAPPRIS P1 TSL 1 (best) BASIC33.59■■■□□ 2.97
SHROOM4Q9ULL8 PROK1-201ENST00000271331 1338 ntAPPRIS P1 TSL 1 (best) BASIC33.59■■■□□ 2.97
SHROOM4Q9ULL8 TBC1D19-201ENST00000264866 2263 ntAPPRIS P1 TSL 1 (best) BASIC33.59■■■□□ 2.97
SHROOM4Q9ULL8 PLEKHH3-204ENST00000591022 2983 ntAPPRIS P2 TSL 1 (best) BASIC33.59■■■□□ 2.97
SHROOM4Q9ULL8 CIZ1-226ENST00000629610 2855 ntAPPRIS ALT2 TSL 2 BASIC33.58■■■□□ 2.97
SHROOM4Q9ULL8 HYAL1-206ENST00000447605 666 ntTSL 1 (best) BASIC33.58■■■□□ 2.97
SHROOM4Q9ULL8 AC124067.2-201ENST00000521989 510 ntTSL 2 BASIC33.58■■■□□ 2.97
SHROOM4Q9ULL8 STT3A-AS1-201ENST00000530526 429 ntTSL 3 BASIC33.58■■■□□ 2.97
SHROOM4Q9ULL8 PUDP-206ENST00000540122 825 ntTSL 2 BASIC33.58■■■□□ 2.97
SHROOM4Q9ULL8 RNASEK-207ENST00000552842 595 ntTSL 3 BASIC33.58■■■□□ 2.97
SHROOM4Q9ULL8 RAB3D-202ENST00000589655 924 ntAPPRIS P1 TSL 2 BASIC33.58■■■□□ 2.97
SHROOM4Q9ULL8 AC010618.3-201ENST00000596643 775 ntTSL 3 BASIC33.58■■■□□ 2.97
SHROOM4Q9ULL8 LINC01128-208ENST00000608189 824 ntTSL 5 BASIC33.58■■■□□ 2.97
SHROOM4Q9ULL8 AC244517.11-201ENST00000624192 573 ntTSL 5 BASIC33.58■■■□□ 2.97
SHROOM4Q9ULL8 AP003717.1-202ENST00000537019 1412 ntTSL 5 BASIC33.58■■■□□ 2.97
SHROOM4Q9ULL8 GAB3-203ENST00000424127 2028 ntAPPRIS ALT2 TSL 1 (best) BASIC33.58■■■□□ 2.97
SHROOM4Q9ULL8 MED29-202ENST00000594368 1471 ntTSL 2 BASIC33.58■■■□□ 2.97
SHROOM4Q9ULL8 KIF25-203ENST00000443060 1613 ntAPPRIS P1 TSL 5 BASIC33.58■■■□□ 2.97
SHROOM4Q9ULL8 ZNF561-AS1-204ENST00000587536 1799 ntTSL 2 BASIC33.58■■■□□ 2.97
SHROOM4Q9ULL8 ZMYND11-214ENST00000509513 2065 ntTSL 1 (best) BASIC33.58■■■□□ 2.97
SHROOM4Q9ULL8 AK1-203ENST00000373176 2266 ntAPPRIS P1 TSL 1 (best) BASIC33.58■■■□□ 2.97
SHROOM4Q9ULL8 SEMA3B-210ENST00000611067 2292 ntAPPRIS ALT2 TSL 1 (best) BASIC33.58■■■□□ 2.97
SHROOM4Q9ULL8 PRKN-202ENST00000366892 1505 ntTSL 5 BASIC33.58■■■□□ 2.97
SHROOM4Q9ULL8 RNF167-205ENST00000571816 1728 ntAPPRIS P3 TSL 5 BASIC33.57■■■□□ 2.97
Retrieved 100 of 98,524 protein–RNA pairs in 40.6 ms