Protein–RNA interactions for Protein: Q9UBR4

LHX3, LIM/homeobox protein Lhx3, humanhuman

Predictions only

Length 397 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
LHX3Q9UBR4 AP001269.4-201ENST00000609611 512 ntBASIC17.93■□□□□ 0.46
LHX3Q9UBR4 REXO1L6P-202ENST00000619970 1078 ntBASIC17.93■□□□□ 0.46
LHX3Q9UBR4 SIRPAP1-201ENST00000448467 1770 ntBASIC17.93■□□□□ 0.46
LHX3Q9UBR4 CSAD-209ENST00000453446 1774 ntAPPRIS P1 TSL 1 (best) BASIC17.93■□□□□ 0.46
LHX3Q9UBR4 KIFC3-201ENST00000379655 3427 ntAPPRIS P3 TSL 1 (best) BASIC17.93■□□□□ 0.46
LHX3Q9UBR4 FCER2-202ENST00000360067 1482 ntAPPRIS ALT2 TSL 5 BASIC17.93■□□□□ 0.46
LHX3Q9UBR4 ANKRD6-204ENST00000447838 2968 ntAPPRIS P3 TSL 1 (best) BASIC17.93■□□□□ 0.46
LHX3Q9UBR4 PSMD4-201ENST00000368881 1333 ntTSL 5 BASIC17.93■□□□□ 0.46
LHX3Q9UBR4 TBXA2R-204ENST00000589966 1814 ntTSL 1 (best) BASIC17.93■□□□□ 0.46
LHX3Q9UBR4 C16orf59-204ENST00000563531 1864 ntAPPRIS ALT2 TSL 5 BASIC17.92■□□□□ 0.46
LHX3Q9UBR4 HTD2-206ENST00000481972 1378 ntAPPRIS P1 TSL 2 BASIC17.92■□□□□ 0.46
LHX3Q9UBR4 AC005329.3-201ENST00000626781 1366 ntTSL 5 BASIC17.92■□□□□ 0.46
LHX3Q9UBR4 TOM1L2-207ENST00000535933 1748 ntTSL 2 BASIC17.92■□□□□ 0.46
LHX3Q9UBR4 LUC7L-202ENST00000337351 2097 ntTSL 1 (best) BASIC17.92■□□□□ 0.46
LHX3Q9UBR4 ARSA-204ENST00000395621 1918 ntAPPRIS P1 TSL 2 BASIC17.92■□□□□ 0.46
LHX3Q9UBR4 VPS37B-201ENST00000267202 3028 ntAPPRIS P1 TSL 1 (best) BASIC17.92■□□□□ 0.46
LHX3Q9UBR4 NRBP1-203ENST00000379852 2163 ntAPPRIS P1 TSL 1 (best) BASIC17.92■□□□□ 0.46
LHX3Q9UBR4 HPS3-202ENST00000460120 2745 ntTSL 2 BASIC17.92■□□□□ 0.46
LHX3Q9UBR4 NXPH2-201ENST00000272641 1052 ntAPPRIS P1 TSL 1 (best) BASIC17.92■□□□□ 0.46
LHX3Q9UBR4 MIR202HG-201ENST00000300167 384 ntTSL 2 BASIC17.92■□□□□ 0.46
LHX3Q9UBR4 CD1E-203ENST00000368156 861 ntTSL 1 (best) BASIC17.92■□□□□ 0.46
LHX3Q9UBR4 ROMO1-203ENST00000374077 422 ntAPPRIS P1 TSL 1 (best) BASIC17.92■□□□□ 0.46
LHX3Q9UBR4 AP000344.1-201ENST00000454268 641 ntTSL 5 BASIC17.92■□□□□ 0.46
LHX3Q9UBR4 AP000344.1-202ENST00000457193 586 ntTSL 4 BASIC17.92■□□□□ 0.46
LHX3Q9UBR4 TRAF7-205ENST00000567653 666 ntTSL 2 BASIC17.92■□□□□ 0.46
LHX3Q9UBR4 FAM220A-205ENST00000578372 207 ntAPPRIS P1 TSL 1 (best) BASIC17.92■□□□□ 0.46
LHX3Q9UBR4 SNHG15-203ENST00000578968 982 ntTSL 1 (best) BASIC17.92■□□□□ 0.46
LHX3Q9UBR4 PLAUR-214ENST00000601723 1205 ntTSL 1 (best) BASIC17.92■□□□□ 0.46
LHX3Q9UBR4 AC019129.2-201ENST00000609837 1235 ntBASIC17.92■□□□□ 0.46
LHX3Q9UBR4 AC133561.2-201ENST00000380145 1802 ntTSL 2 BASIC17.92■□□□□ 0.46
LHX3Q9UBR4 OLFM1-201ENST00000252854 2591 ntTSL 1 (best) BASIC17.92■□□□□ 0.46
LHX3Q9UBR4 PCDHA1-202ENST00000394633 2204 ntTSL 1 (best) BASIC17.92■□□□□ 0.46
LHX3Q9UBR4 GRAP2-202ENST00000407075 1304 ntAPPRIS P1 TSL 1 (best) BASIC17.92■□□□□ 0.46
LHX3Q9UBR4 REXO1L11P-201ENST00000620964 1927 ntBASIC17.92■□□□□ 0.46
LHX3Q9UBR4 NME9-203ENST00000383180 2133 ntTSL 2 BASIC17.92■□□□□ 0.46
LHX3Q9UBR4 ZNF668-202ENST00000394983 2717 ntAPPRIS P1 TSL 5 BASIC17.92■□□□□ 0.46
LHX3Q9UBR4 PODN-203ENST00000395871 2744 ntTSL 5 BASIC17.92■□□□□ 0.46
LHX3Q9UBR4 CARMIL2-201ENST00000334583 4687 ntAPPRIS P3 TSL 1 (best) BASIC17.92■□□□□ 0.46
LHX3Q9UBR4 NR1H3-202ENST00000405576 1352 ntTSL 5 BASIC17.91■□□□□ 0.46
LHX3Q9UBR4 THNSL2-203ENST00000377254 1560 ntTSL 2 BASIC17.91■□□□□ 0.46
LHX3Q9UBR4 SRRM3-204ENST00000611745 3612 ntAPPRIS P1 TSL 5 BASIC17.91■□□□□ 0.46
LHX3Q9UBR4 CD40-201ENST00000372276 1623 ntTSL 1 (best) BASIC17.91■□□□□ 0.46
LHX3Q9UBR4 PC-208ENST00000529047 1607 ntTSL 3 BASIC17.91■□□□□ 0.46
LHX3Q9UBR4 P2RY6-209ENST00000540342 1611 ntAPPRIS P1 TSL 2 BASIC17.91■□□□□ 0.46
LHX3Q9UBR4 NPBWR1-201ENST00000331251 2687 ntAPPRIS P1 BASIC17.91■□□□□ 0.46
LHX3Q9UBR4 SYTL3-201ENST00000297239 2292 ntAPPRIS ALT1 TSL 1 (best) BASIC17.91■□□□□ 0.46
LHX3Q9UBR4 TDP2-202ENST00000378198 2071 ntAPPRIS P2 TSL 1 (best) BASIC17.91■□□□□ 0.46
LHX3Q9UBR4 DTX3-204ENST00000548804 2067 ntAPPRIS P3 TSL 5 BASIC17.91■□□□□ 0.46
LHX3Q9UBR4 CXXC5-211ENST00000511048 1892 ntAPPRIS P1 TSL 2 BASIC17.91■□□□□ 0.46
LHX3Q9UBR4 TMEM234-202ENST00000344461 721 ntTSL 1 (best) BASIC17.91■□□□□ 0.46
LHX3Q9UBR4 GUCA2A-201ENST00000357001 569 ntAPPRIS P1 TSL 1 (best) BASIC17.91■□□□□ 0.46
LHX3Q9UBR4 PRSS38-201ENST00000366757 1267 ntAPPRIS P1 TSL 1 (best) BASIC17.91■□□□□ 0.46
LHX3Q9UBR4 SZT2-202ENST00000372450 1191 ntAPPRIS ALT2 TSL 1 (best) BASIC17.91■□□□□ 0.46
LHX3Q9UBR4 KCNAB2-205ENST00000378092 1202 ntAPPRIS ALT1 TSL 5 BASIC17.91■□□□□ 0.46
LHX3Q9UBR4 PDLIM4-202ENST00000379018 1006 ntTSL 1 (best) BASIC17.91■□□□□ 0.46
LHX3Q9UBR4 CD9-202ENST00000382515 1229 ntTSL 5 BASIC17.91■□□□□ 0.46
LHX3Q9UBR4 TFPT-203ENST00000391759 1205 ntAPPRIS P3 TSL 1 (best) BASIC17.91■□□□□ 0.46
LHX3Q9UBR4 CYCS-202ENST00000409409 974 ntAPPRIS P1 TSL 3 BASIC17.91■□□□□ 0.46
LHX3Q9UBR4 RBSN-204ENST00000449050 903 ntTSL 2 BASIC17.91■□□□□ 0.46
LHX3Q9UBR4 CT47A11-201ENST00000457020 1294 ntAPPRIS P1 TSL 1 (best) BASIC17.91■□□□□ 0.46
LHX3Q9UBR4 TMEM218-203ENST00000526175 972 ntAPPRIS P1 TSL 3 BASIC17.91■□□□□ 0.46
LHX3Q9UBR4 AC004801.5-202ENST00000546804 530 ntTSL 4 BASIC17.91■□□□□ 0.46
LHX3Q9UBR4 AC021739.5-201ENST00000558637 494 ntTSL 3 BASIC17.91■□□□□ 0.46
LHX3Q9UBR4 LINC01711-201ENST00000598340 967 ntBASIC17.91■□□□□ 0.46
LHX3Q9UBR4 AL121894.2-201ENST00000602977 491 ntBASIC17.91■□□□□ 0.46
LHX3Q9UBR4 AXIN2-208ENST00000611991 1019 ntTSL 5 BASIC17.91■□□□□ 0.46
LHX3Q9UBR4 FAM25C-201ENST00000617224 319 ntAPPRIS P1 TSL 1 (best) BASIC17.91■□□□□ 0.46
LHX3Q9UBR4 AL691432.3-201ENST00000621860 400 ntBASIC17.91■□□□□ 0.46
LHX3Q9UBR4 HSPA1A-202ENST00000608703 1909 ntTSL 2 BASIC17.91■□□□□ 0.46
LHX3Q9UBR4 CHRNB1-201ENST00000306071 2557 ntAPPRIS P1 TSL 1 (best) BASIC17.91■□□□□ 0.46
LHX3Q9UBR4 TRIB3-202ENST00000422053 1533 ntAPPRIS ALT2 TSL 2 BASIC17.91■□□□□ 0.46
LHX3Q9UBR4 TMUB2-213ENST00000589856 1505 ntTSL 2 BASIC17.91■□□□□ 0.46
LHX3Q9UBR4 PRSS35-201ENST00000369700 2440 ntAPPRIS P1 TSL 1 (best) BASIC17.91■□□□□ 0.46
LHX3Q9UBR4 MCU-201ENST00000357157 2874 ntTSL 1 (best) BASIC17.91■□□□□ 0.46
LHX3Q9UBR4 NEIL2-202ENST00000403422 2016 ntTSL 2 BASIC17.91■□□□□ 0.46
LHX3Q9UBR4 ZNF385A-202ENST00000352268 2076 ntTSL 2 BASIC17.91■□□□□ 0.46
LHX3Q9UBR4 GATB-213ENST00000515812 1893 ntTSL 5 BASIC17.9■□□□□ 0.46
LHX3Q9UBR4 SPNS3-201ENST00000355530 2133 ntAPPRIS P1 TSL 2 BASIC17.9■□□□□ 0.46
LHX3Q9UBR4 MACROD2-201ENST00000217246 4994 ntAPPRIS P1 TSL 2 BASIC17.9■□□□□ 0.46
LHX3Q9UBR4 TEX264-209ENST00000457573 1448 ntAPPRIS P3 TSL 5 BASIC17.9■□□□□ 0.46
LHX3Q9UBR4 OLFM2-203ENST00000590841 1665 ntTSL 2 BASIC17.9■□□□□ 0.46
LHX3Q9UBR4 NOC2LP2-201ENST00000407594 1944 ntBASIC17.9■□□□□ 0.46
LHX3Q9UBR4 KMT2B-201ENST00000420124 8469 ntAPPRIS P1 TSL 1 (best) BASIC17.9■□□□□ 0.46
LHX3Q9UBR4 DACT2-201ENST00000366795 2942 ntAPPRIS P3 TSL 2 BASIC17.9■□□□□ 0.46
LHX3Q9UBR4 RPS6KA1-204ENST00000374168 3186 ntAPPRIS P1 TSL 1 (best) BASIC17.9■□□□□ 0.46
LHX3Q9UBR4 PEX16-201ENST00000241041 1479 ntTSL 1 (best) BASIC17.9■□□□□ 0.46
LHX3Q9UBR4 UBE2Q2-208ENST00000569423 2969 ntTSL 2 BASIC17.9■□□□□ 0.46
LHX3Q9UBR4 SLC35A3-217ENST00000639807 2767 ntTSL 5 BASIC17.9■□□□□ 0.46
LHX3Q9UBR4 CPXM2-204ENST00000615851 2512 ntTSL 5 BASIC17.9■□□□□ 0.46
LHX3Q9UBR4 C18orf8-208ENST00000590868 2002 ntTSL 2 BASIC17.9■□□□□ 0.46
LHX3Q9UBR4 HARS-201ENST00000307633 1780 ntTSL 2 BASIC17.9■□□□□ 0.46
LHX3Q9UBR4 PITPNM2-209ENST00000546049 1793 ntTSL 5 BASIC17.9■□□□□ 0.46
LHX3Q9UBR4 HCCS-202ENST00000380762 1072 ntAPPRIS P1 TSL 1 (best) BASIC17.9■□□□□ 0.46
LHX3Q9UBR4 MCFD2-203ENST00000409147 671 ntTSL 2 BASIC17.9■□□□□ 0.46
LHX3Q9UBR4 ABCD1P5-201ENST00000445663 754 ntBASIC17.9■□□□□ 0.46
LHX3Q9UBR4 SAPCD2P3-201ENST00000455031 850 ntBASIC17.9■□□□□ 0.46
LHX3Q9UBR4 PP7080-204ENST00000510714 601 ntTSL 3 BASIC17.9■□□□□ 0.46
LHX3Q9UBR4 TMEM135-209ENST00000532959 1149 ntTSL 2 BASIC17.9■□□□□ 0.46
LHX3Q9UBR4 BMF-207ENST00000559701 630 ntTSL 3 BASIC17.9■□□□□ 0.46
LHX3Q9UBR4 ATP6V0C-202ENST00000564973 1081 ntTSL 2 BASIC17.9■□□□□ 0.46
Retrieved 100 of 98,524 protein–RNA pairs in 55.8 ms