Protein–RNA interactions for Protein: Q9NP79

VTA1, Vacuolar protein sorting-associated protein VTA1 homolog, humanhuman

Predictions only

Length 307 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
VTA1Q9NP79 BRICD5-202ENST00000562360 783 ntTSL 2 BASIC19.84■□□□□ 0.77
VTA1Q9NP79 STK25P1-201ENST00000585406 838 ntBASIC19.84■□□□□ 0.77
VTA1Q9NP79 ELOF1-204ENST00000587806 1172 ntTSL 2 BASIC19.84■□□□□ 0.77
VTA1Q9NP79 AC005256.1-202ENST00000592934 415 ntTSL 2 BASIC19.84■□□□□ 0.77
VTA1Q9NP79 MTDHP5-201ENST00000598980 586 ntBASIC19.84■□□□□ 0.77
VTA1Q9NP79 AC074135.2-201ENST00000600896 510 ntTSL 3 BASIC19.84■□□□□ 0.77
VTA1Q9NP79 SMN2-216ENST00000638794 846 ntAPPRIS ALT2 TSL 5 BASIC19.84■□□□□ 0.77
VTA1Q9NP79 GMPPA-204ENST00000373908 1501 ntAPPRIS P1 TSL 5 BASIC19.84■□□□□ 0.77
VTA1Q9NP79 ALG3-201ENST00000397676 1528 ntAPPRIS P1 TSL 1 (best) BASIC19.84■□□□□ 0.77
VTA1Q9NP79 CDK10-202ENST00000353379 1798 ntAPPRIS P1 TSL 1 (best) BASIC19.84■□□□□ 0.77
VTA1Q9NP79 NSUN5P2-205ENST00000602348 1776 ntTSL 1 (best) BASIC19.84■□□□□ 0.77
VTA1Q9NP79 WIZP1-201ENST00000531444 2299 ntBASIC19.84■□□□□ 0.77
VTA1Q9NP79 FLT1-207ENST00000615840 6453 ntTSL 1 (best) BASIC19.84■□□□□ 0.77
VTA1Q9NP79 DMRT2-201ENST00000259622 2459 ntTSL 2 BASIC19.84■□□□□ 0.77
VTA1Q9NP79 CD1E-205ENST00000368160 1727 ntAPPRIS ALT2 TSL 1 (best) BASIC19.84■□□□□ 0.77
VTA1Q9NP79 NFKBID-210ENST00000606253 1736 ntAPPRIS ALT2 TSL 1 (best) BASIC19.84■□□□□ 0.77
VTA1Q9NP79 LINC00535-201ENST00000501400 1914 ntTSL 1 (best) BASIC19.84■□□□□ 0.77
VTA1Q9NP79 KCNH2-202ENST00000330883 3267 ntTSL 1 (best) BASIC19.84■□□□□ 0.77
VTA1Q9NP79 NAT8L-201ENST00000331662 5571 ntTSL 1 (best) BASIC19.84■□□□□ 0.77
VTA1Q9NP79 CCDC115-201ENST00000259229 1646 ntAPPRIS P1 TSL 1 (best) BASIC19.84■□□□□ 0.77
VTA1Q9NP79 SYCE1-203ENST00000368517 1377 ntAPPRIS P3 TSL 5 BASIC19.83■□□□□ 0.77
VTA1Q9NP79 KRT85-202ENST00000544265 1387 ntTSL 2 BASIC19.83■□□□□ 0.77
VTA1Q9NP79 ADRA1A-201ENST00000276393 2281 ntAPPRIS P1 TSL 1 (best) BASIC19.83■□□□□ 0.77
VTA1Q9NP79 SYTL1-208ENST00000543823 2229 ntAPPRIS P1 TSL 1 (best) BASIC19.83■□□□□ 0.77
VTA1Q9NP79 EIPR1-201ENST00000382125 1766 ntAPPRIS P1 TSL 1 (best) BASIC19.83■□□□□ 0.77
VTA1Q9NP79 TJP1-208ENST00000495972 2890 ntTSL 1 (best) BASIC19.83■□□□□ 0.77
VTA1Q9NP79 HMGA1-205ENST00000447654 2159 ntAPPRIS P4 TSL 1 (best) BASIC19.83■□□□□ 0.77
VTA1Q9NP79 ACOT4-201ENST00000326303 2362 ntAPPRIS P1 TSL 1 (best) BASIC19.83■□□□□ 0.77
VTA1Q9NP79 CCDC151-201ENST00000356392 2107 ntAPPRIS P1 TSL 1 (best) BASIC19.83■□□□□ 0.77
VTA1Q9NP79 MRPL20-203ENST00000482352 1049 ntTSL 2 BASIC19.83■□□□□ 0.77
VTA1Q9NP79 AL157871.1-202ENST00000556458 478 ntTSL 5 BASIC19.83■□□□□ 0.77
VTA1Q9NP79 PSME1-205ENST00000559123 1033 ntTSL 5 BASIC19.83■□□□□ 0.77
VTA1Q9NP79 AC008403.2-204ENST00000600650 1006 ntTSL 3 BASIC19.83■□□□□ 0.77
VTA1Q9NP79 AC244517.5-205ENST00000623615 575 ntTSL 4 BASIC19.83■□□□□ 0.77
VTA1Q9NP79 GPX3-209ENST00000614343 1478 ntTSL 1 (best) BASIC19.83■□□□□ 0.76
VTA1Q9NP79 FOXP1-214ENST00000493089 2703 ntAPPRIS ALT1 TSL 2 BASIC19.83■□□□□ 0.76
VTA1Q9NP79 VMAC-201ENST00000339485 2254 ntAPPRIS P1 TSL 1 (best) BASIC19.83■□□□□ 0.76
VTA1Q9NP79 SLC23A3-207ENST00000455516 2048 ntTSL 2 BASIC19.83■□□□□ 0.76
VTA1Q9NP79 GINS4-206ENST00000520710 2022 ntTSL 2 BASIC19.83■□□□□ 0.76
VTA1Q9NP79 ANKRD40-201ENST00000285243 4184 ntAPPRIS P1 TSL 1 (best) BASIC19.83■□□□□ 0.76
VTA1Q9NP79 C6orf223-202ENST00000439969 2757 ntTSL 2 BASIC19.83■□□□□ 0.76
VTA1Q9NP79 AP003356.1-202ENST00000517910 2770 ntTSL 2 BASIC19.83■□□□□ 0.76
VTA1Q9NP79 FBXL19-207ENST00000565690 2570 ntAPPRIS ALT2 TSL 5 BASIC19.83■□□□□ 0.76
VTA1Q9NP79 LYRM9-203ENST00000460380 2196 ntTSL 2 BASIC19.83■□□□□ 0.76
VTA1Q9NP79 C2CD2-202ENST00000380486 6345 ntAPPRIS P1 TSL 1 (best) BASIC19.83■□□□□ 0.76
VTA1Q9NP79 C10orf111-201ENST00000624760 1714 ntTSL 1 (best) BASIC19.82■□□□□ 0.76
VTA1Q9NP79 CYR61-201ENST00000451137 2290 ntAPPRIS P1 TSL 1 (best) BASIC19.82■□□□□ 0.76
VTA1Q9NP79 AC008073.3-201ENST00000610442 2281 ntAPPRIS P1 TSL 2 BASIC19.82■□□□□ 0.76
VTA1Q9NP79 ZMYND11-214ENST00000509513 2065 ntTSL 1 (best) BASIC19.82■□□□□ 0.76
VTA1Q9NP79 SEPT8-216ENST00000620483 4335 ntTSL 5 BASIC19.82■□□□□ 0.76
VTA1Q9NP79 ZNF446-207ENST00000610298 1869 ntTSL 1 (best) BASIC19.82■□□□□ 0.76
VTA1Q9NP79 GAB3-203ENST00000424127 2028 ntAPPRIS ALT2 TSL 1 (best) BASIC19.82■□□□□ 0.76
VTA1Q9NP79 PRRT2-216ENST00000637403 2033 ntTSL 5 BASIC19.82■□□□□ 0.76
VTA1Q9NP79 CGREF1-201ENST00000260595 1177 ntAPPRIS ALT2 TSL 5 BASIC19.82■□□□□ 0.76
VTA1Q9NP79 KRTCAP2-201ENST00000295682 552 ntAPPRIS P1 TSL 1 (best) BASIC19.82■□□□□ 0.76
VTA1Q9NP79 NFKBIB-202ENST00000392079 991 ntTSL 5 BASIC19.82■□□□□ 0.76
VTA1Q9NP79 RFXANK-203ENST00000407360 1212 ntAPPRIS P1 TSL 1 (best) BASIC19.82■□□□□ 0.76
VTA1Q9NP79 MRPS12-203ENST00000407800 1220 ntAPPRIS P1 TSL 1 (best) BASIC19.82■□□□□ 0.76
VTA1Q9NP79 COA5-202ENST00000409997 557 ntTSL 4 BASIC19.82■□□□□ 0.76
VTA1Q9NP79 SNHG11-205ENST00000421599 1046 ntTSL 3 BASIC19.82■□□□□ 0.76
VTA1Q9NP79 SUMO2P17-202ENST00000508743 738 ntTSL 3 BASIC19.82■□□□□ 0.76
VTA1Q9NP79 AC092384.3-201ENST00000561980 531 ntTSL 4 BASIC19.82■□□□□ 0.76
VTA1Q9NP79 BLOC1S6-202ENST00000562384 494 ntTSL 4 BASIC19.82■□□□□ 0.76
VTA1Q9NP79 AL590235.2-202ENST00000602543 594 ntTSL 5 BASIC19.82■□□□□ 0.76
VTA1Q9NP79 AC008667.4-201ENST00000607370 168 ntBASIC19.82■□□□□ 0.76
VTA1Q9NP79 Z94160.2-201ENST00000609322 910 ntTSL 1 (best) BASIC19.82■□□□□ 0.76
VTA1Q9NP79 PPP1R3F-201ENST00000055335 3421 ntAPPRIS P1 TSL 2 BASIC19.82■□□□□ 0.76
VTA1Q9NP79 AC100803.2-201ENST00000562459 1963 ntBASIC19.82■□□□□ 0.76
VTA1Q9NP79 SERPINA4-201ENST00000298841 1784 ntAPPRIS P1 TSL 1 (best) BASIC19.82■□□□□ 0.76
VTA1Q9NP79 BAIAP2L2-202ENST00000381669 2146 ntAPPRIS P2 TSL 1 (best) BASIC19.82■□□□□ 0.76
VTA1Q9NP79 SNAPC3-207ENST00000610884 2453 ntAPPRIS P1 TSL 1 (best) BASIC19.82■□□□□ 0.76
VTA1Q9NP79 CLASRP-203ENST00000391953 1941 ntTSL 2 BASIC19.82■□□□□ 0.76
VTA1Q9NP79 YAP1-201ENST00000282441 5386 ntAPPRIS P3 TSL 1 (best) BASIC19.82■□□□□ 0.76
VTA1Q9NP79 KLF16-201ENST00000250916 2890 ntAPPRIS P1 TSL 1 (best) BASIC19.81■□□□□ 0.76
VTA1Q9NP79 SQOR-201ENST00000260324 2003 ntAPPRIS P1 TSL 1 (best) BASIC19.81■□□□□ 0.76
VTA1Q9NP79 TLE3-201ENST00000317509 5207 ntTSL 1 (best) BASIC19.81■□□□□ 0.76
VTA1Q9NP79 LIPG-203ENST00000577628 2323 ntTSL 2 BASIC19.81■□□□□ 0.76
VTA1Q9NP79 SLC35E1-208ENST00000595753 5099 ntAPPRIS P1 TSL 1 (best) BASIC19.81■□□□□ 0.76
VTA1Q9NP79 EFTUD1P1-204ENST00000560401 1798 ntBASIC19.81■□□□□ 0.76
VTA1Q9NP79 DBI-201ENST00000311521 714 ntTSL 1 (best) BASIC19.81■□□□□ 0.76
VTA1Q9NP79 CRYGEP-201ENST00000412192 528 ntBASIC19.81■□□□□ 0.76
VTA1Q9NP79 TSTD1-204ENST00000423014 593 ntAPPRIS ALT2 TSL 2 BASIC19.81■□□□□ 0.76
VTA1Q9NP79 KRT18P2-201ENST00000447938 1258 ntBASIC19.81■□□□□ 0.76
VTA1Q9NP79 AC004967.1-201ENST00000453589 447 ntBASIC19.81■□□□□ 0.76
VTA1Q9NP79 BARX1-AS1-202ENST00000454594 307 ntTSL 3 BASIC19.81■□□□□ 0.76
VTA1Q9NP79 LINC00237-202ENST00000455890 1220 ntTSL 2 BASIC19.81■□□□□ 0.76
VTA1Q9NP79 AC108073.2-201ENST00000464002 357 ntBASIC19.81■□□□□ 0.76
VTA1Q9NP79 IDH3B-206ENST00000474315 1279 ntAPPRIS ALT1 TSL 1 (best) BASIC19.81■□□□□ 0.76
VTA1Q9NP79 RPS15P9-201ENST00000494093 319 ntBASIC19.81■□□□□ 0.76
VTA1Q9NP79 STK19B-204ENST00000512515 211 ntBASIC19.81■□□□□ 0.76
VTA1Q9NP79 IGHV3-52-201ENST00000519770 353 ntBASIC19.81■□□□□ 0.76
VTA1Q9NP79 IGHV3-65-201ENST00000523210 341 ntBASIC19.81■□□□□ 0.76
VTA1Q9NP79 ZFPM1-204ENST00000563351 808 ntTSL 2 BASIC19.81■□□□□ 0.76
VTA1Q9NP79 AC092718.3-202ENST00000564536 1032 ntAPPRIS P5 TSL 5 BASIC19.81■□□□□ 0.76
VTA1Q9NP79 NUTF2-206ENST00000569436 1119 ntAPPRIS P1 TSL 2 BASIC19.81■□□□□ 0.76
VTA1Q9NP79 CDC42EP4-206ENST00000581014 737 ntTSL 5 BASIC19.81■□□□□ 0.76
VTA1Q9NP79 LINC01842-201ENST00000588275 768 ntTSL 1 (best) BASIC19.81■□□□□ 0.76
VTA1Q9NP79 AP001160.2-201ENST00000596071 487 ntBASIC19.81■□□□□ 0.76
VTA1Q9NP79 AC079781.4-201ENST00000641908 219 ntBASIC19.81■□□□□ 0.76
VTA1Q9NP79 CYBA-210ENST00000569359 1415 ntTSL 1 (best) BASIC19.81■□□□□ 0.76
Retrieved 100 of 98,524 protein–RNA pairs in 25.5 ms