Protein–RNA interactions for Protein: Q9HCM9

TRIM39, E3 ubiquitin-protein ligase TRIM39, humanhuman

Predictions only

Length 518 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
TRIM39Q9HCM9 ZNF772-206ENST00000600175 737 ntTSL 2 BASIC17.67■□□□□ 0.42
TRIM39Q9HCM9 AC012313.10-201ENST00000623509 926 ntBASIC17.67■□□□□ 0.42
TRIM39Q9HCM9 TAL1-201ENST00000294339 5001 ntAPPRIS P1 TSL 1 (best) BASIC17.67■□□□□ 0.42
TRIM39Q9HCM9 ECE1-203ENST00000374893 2484 ntTSL 1 (best) BASIC17.67■□□□□ 0.42
TRIM39Q9HCM9 SYT3-206ENST00000600079 2463 ntAPPRIS P1 TSL 1 (best) BASIC17.67■□□□□ 0.42
TRIM39Q9HCM9 PAX4-204ENST00000463946 1613 ntTSL 1 (best) BASIC17.67■□□□□ 0.42
TRIM39Q9HCM9 AC138028.4-201ENST00000564984 1845 ntBASIC17.67■□□□□ 0.42
TRIM39Q9HCM9 ACSM2B-208ENST00000565322 1834 ntTSL 2 BASIC17.67■□□□□ 0.42
TRIM39Q9HCM9 RNFT2-202ENST00000319176 2180 ntTSL 5 BASIC17.67■□□□□ 0.42
TRIM39Q9HCM9 GPC2-201ENST00000292377 2532 ntAPPRIS P1 TSL 1 (best) BASIC17.67■□□□□ 0.42
TRIM39Q9HCM9 AL390961.4-201ENST00000623958 2535 ntBASIC17.67■□□□□ 0.42
TRIM39Q9HCM9 AC097374.2-201ENST00000618617 1306 ntBASIC17.67■□□□□ 0.42
TRIM39Q9HCM9 NUAK1-201ENST00000261402 6828 ntAPPRIS P1 TSL 1 (best) BASIC17.67■□□□□ 0.42
TRIM39Q9HCM9 DACT2-201ENST00000366795 2942 ntAPPRIS P3 TSL 2 BASIC17.67■□□□□ 0.42
TRIM39Q9HCM9 KRT86-202ENST00000423955 2217 ntAPPRIS P1 TSL 2 BASIC17.67■□□□□ 0.42
TRIM39Q9HCM9 AL354751.1-201ENST00000412768 1863 ntBASIC17.67■□□□□ 0.42
TRIM39Q9HCM9 AC002310.5-201ENST00000569360 1515 ntAPPRIS P1 TSL 2 BASIC17.67■□□□□ 0.42
TRIM39Q9HCM9 CABIN1-202ENST00000337989 2422 ntAPPRIS ALT2 TSL 1 (best) BASIC17.67■□□□□ 0.42
TRIM39Q9HCM9 ZIC1-201ENST00000282928 5241 ntAPPRIS P1 TSL 1 (best) BASIC17.66■□□□□ 0.42
TRIM39Q9HCM9 YDJC-201ENST00000292778 1351 ntAPPRIS P1 TSL 2 BASIC17.66■□□□□ 0.42
TRIM39Q9HCM9 PLCL2-204ENST00000615277 4147 ntAPPRIS ALT2 TSL 1 (best) BASIC17.66■□□□□ 0.42
TRIM39Q9HCM9 AC005865.2-201ENST00000505276 2303 ntTSL 2 BASIC17.66■□□□□ 0.42
TRIM39Q9HCM9 TUBGCP3-202ENST00000375669 2723 ntTSL 1 (best) BASIC17.66■□□□□ 0.42
TRIM39Q9HCM9 DCST1-204ENST00000423025 2199 ntAPPRIS ALT2 TSL 2 BASIC17.66■□□□□ 0.42
TRIM39Q9HCM9 BTNL9-202ENST00000376841 1626 ntTSL 1 (best) BASIC17.66■□□□□ 0.42
TRIM39Q9HCM9 HNRNPK-202ENST00000360384 2038 ntAPPRIS ALT1 TSL 1 (best) BASIC17.66■□□□□ 0.42
TRIM39Q9HCM9 NUDT10-202ENST00000376006 2001 ntAPPRIS P1 TSL 1 (best) BASIC17.66■□□□□ 0.42
TRIM39Q9HCM9 BOLA1-202ENST00000369152 859 ntAPPRIS P1 TSL 1 (best) BASIC17.66■□□□□ 0.42
TRIM39Q9HCM9 C1QC-201ENST00000374637 1089 ntAPPRIS P1 TSL 3 BASIC17.66■□□□□ 0.42
TRIM39Q9HCM9 RPUSD3-201ENST00000383820 1225 ntAPPRIS P1 TSL 1 (best) BASIC17.66■□□□□ 0.42
TRIM39Q9HCM9 DUSP5P1-201ENST00000441325 1139 ntBASIC17.66■□□□□ 0.42
TRIM39Q9HCM9 SMIM4-202ENST00000476842 522 ntTSL 4 BASIC17.66■□□□□ 0.42
TRIM39Q9HCM9 FOSL1P1-201ENST00000511041 816 ntBASIC17.66■□□□□ 0.42
TRIM39Q9HCM9 RNASEH2C-202ENST00000527610 835 ntTSL 2 BASIC17.66■□□□□ 0.42
TRIM39Q9HCM9 SDHD-206ENST00000528182 754 ntTSL 3 BASIC17.66■□□□□ 0.42
TRIM39Q9HCM9 AC139749.1-201ENST00000534584 1094 ntTSL 3 BASIC17.66■□□□□ 0.42
TRIM39Q9HCM9 AC013356.2-201ENST00000559730 729 ntTSL 3 BASIC17.66■□□□□ 0.42
TRIM39Q9HCM9 FAM57A-205ENST00000572018 373 ntTSL 3 BASIC17.66■□□□□ 0.42
TRIM39Q9HCM9 AL121772.3-201ENST00000610840 674 ntBASIC17.66■□□□□ 0.42
TRIM39Q9HCM9 PACSIN2-203ENST00000402229 1883 ntAPPRIS P1 TSL 5 BASIC17.66■□□□□ 0.42
TRIM39Q9HCM9 AL139099.2-201ENST00000555043 2469 ntTSL 2 BASIC17.66■□□□□ 0.42
TRIM39Q9HCM9 CAPN5-205ENST00000529629 2333 ntAPPRIS P1 TSL 1 (best) BASIC17.66■□□□□ 0.42
TRIM39Q9HCM9 SLC22A11-202ENST00000377581 1975 ntTSL 5 BASIC17.66■□□□□ 0.42
TRIM39Q9HCM9 CLEC10A-201ENST00000254868 1797 ntAPPRIS P3 TSL 1 (best) BASIC17.66■□□□□ 0.42
TRIM39Q9HCM9 TEX13A-201ENST00000600991 1377 ntAPPRIS P1 TSL 1 (best) BASIC17.66■□□□□ 0.42
TRIM39Q9HCM9 FAM228B-210ENST00000615575 1357 ntAPPRIS P3 TSL 5 BASIC17.66■□□□□ 0.42
TRIM39Q9HCM9 AL590648.2-201ENST00000427949 2225 ntTSL 2 BASIC17.66■□□□□ 0.42
TRIM39Q9HCM9 SEMA3B-209ENST00000456560 2221 ntTSL 1 (best) BASIC17.66■□□□□ 0.42
TRIM39Q9HCM9 NOMO3-201ENST00000263012 3911 ntAPPRIS ALT2 TSL 1 (best) BASIC17.66■□□□□ 0.42
TRIM39Q9HCM9 ELAC2-202ENST00000395962 2924 ntTSL 2 BASIC17.65■□□□□ 0.42
TRIM39Q9HCM9 AC120049.1-201ENST00000592638 2065 ntTSL 1 (best) BASIC17.65■□□□□ 0.42
TRIM39Q9HCM9 C6orf136-203ENST00000376473 1402 ntAPPRIS P1 TSL 1 (best) BASIC17.65■□□□□ 0.42
TRIM39Q9HCM9 SMN1-204ENST00000506163 1445 ntAPPRIS ALT2 TSL 1 (best) BASIC17.65■□□□□ 0.42
TRIM39Q9HCM9 GGT3P-201ENST00000412448 2340 ntTSL 2 BASIC17.65■□□□□ 0.42
TRIM39Q9HCM9 PHF12-205ENST00000577226 7679 ntTSL 1 (best) BASIC17.65■□□□□ 0.42
TRIM39Q9HCM9 VPS37B-201ENST00000267202 3028 ntAPPRIS P1 TSL 1 (best) BASIC17.65■□□□□ 0.42
TRIM39Q9HCM9 SAMD3-202ENST00000368134 2377 ntAPPRIS P1 TSL 2 BASIC17.65■□□□□ 0.42
TRIM39Q9HCM9 RMND5B-201ENST00000313386 1929 ntAPPRIS P1 TSL 1 (best) BASIC17.65■□□□□ 0.42
TRIM39Q9HCM9 SLC2A8-202ENST00000373360 1937 ntTSL 1 (best) BASIC17.65■□□□□ 0.42
TRIM39Q9HCM9 MAEA-219ENST00000514708 1945 ntTSL 2 BASIC17.65■□□□□ 0.42
TRIM39Q9HCM9 ATP6AP2-214ENST00000636287 1904 ntAPPRIS ALT2 TSL 5 BASIC17.65■□□□□ 0.42
TRIM39Q9HCM9 NFATC4-223ENST00000555802 1476 ntTSL 1 (best) BASIC17.65■□□□□ 0.42
TRIM39Q9HCM9 TPST2-201ENST00000338754 5697 ntAPPRIS P1 TSL 1 (best) BASIC17.65■□□□□ 0.42
TRIM39Q9HCM9 INS-201ENST00000250971 503 ntAPPRIS P1 TSL 1 (best) BASIC17.65■□□□□ 0.42
TRIM39Q9HCM9 SWI5-201ENST00000320188 980 ntAPPRIS P3 TSL 1 (best) BASIC17.65■□□□□ 0.42
TRIM39Q9HCM9 TSPY19P-201ENST00000418461 509 ntBASIC17.65■□□□□ 0.42
TRIM39Q9HCM9 CAMTA1-IT1-201ENST00000427317 365 ntTSL 3 BASIC17.65■□□□□ 0.42
TRIM39Q9HCM9 TSPY18P-201ENST00000441642 509 ntBASIC17.65■□□□□ 0.42
TRIM39Q9HCM9 DANCR-204ENST00000444958 709 ntTSL 3 BASIC17.65■□□□□ 0.42
TRIM39Q9HCM9 ZNF436-AS1-203ENST00000454117 997 ntTSL 1 (best) BASIC17.65■□□□□ 0.42
TRIM39Q9HCM9 TNFSF13-208ENST00000483039 959 ntTSL 2 BASIC17.65■□□□□ 0.42
TRIM39Q9HCM9 BARHL1-202ENST00000542090 1197 ntAPPRIS P1 TSL 1 (best) BASIC17.65■□□□□ 0.42
TRIM39Q9HCM9 AL133352.1-203ENST00000557395 1234 ntAPPRIS P5 TSL 2 BASIC17.65■□□□□ 0.42
TRIM39Q9HCM9 RPL28-210ENST00000560583 1204 ntTSL 2 BASIC17.65■□□□□ 0.42
TRIM39Q9HCM9 CCNC-219ENST00000627680 896 ntTSL 5 BASIC17.65■□□□□ 0.42
TRIM39Q9HCM9 COL27A1-201ENST00000356083 7790 ntAPPRIS P1 TSL 1 (best) BASIC17.65■□□□□ 0.42
TRIM39Q9HCM9 GMPR-201ENST00000259727 1515 ntAPPRIS P1 TSL 1 (best) BASIC17.65■□□□□ 0.42
TRIM39Q9HCM9 TBC1D3P5-201ENST00000579401 1545 ntBASIC17.65■□□□□ 0.42
TRIM39Q9HCM9 PNPO-201ENST00000225573 2256 ntTSL 1 (best) BASIC17.65■□□□□ 0.42
TRIM39Q9HCM9 KMT5B-205ENST00000402789 1599 ntTSL 5 BASIC17.65■□□□□ 0.42
TRIM39Q9HCM9 PSRC1-205ENST00000409138 1826 ntTSL 2 BASIC17.65■□□□□ 0.42
TRIM39Q9HCM9 POM121C-208ENST00000615331 5835 ntAPPRIS P2 TSL 1 (best) BASIC17.65■□□□□ 0.42
TRIM39Q9HCM9 CD14-201ENST00000302014 1886 ntAPPRIS P1 TSL 1 (best) BASIC17.65■□□□□ 0.42
TRIM39Q9HCM9 SULT1A1-204ENST00000395609 1871 ntAPPRIS P1 TSL 1 (best) BASIC17.65■□□□□ 0.42
TRIM39Q9HCM9 CACNB3-202ENST00000536187 1872 ntTSL 2 BASIC17.65■□□□□ 0.42
TRIM39Q9HCM9 KRT8P47-201ENST00000604727 1398 ntBASIC17.65■□□□□ 0.42
TRIM39Q9HCM9 TCP11-228ENST00000611141 2130 ntAPPRIS ALT2 TSL 1 (best) BASIC17.65■□□□□ 0.42
TRIM39Q9HCM9 MEST-201ENST00000223215 2465 ntAPPRIS P4 TSL 1 (best) BASIC17.64■□□□□ 0.42
TRIM39Q9HCM9 BMS1P4-202ENST00000584747 1716 ntTSL 1 (best) BASIC17.64■□□□□ 0.41
TRIM39Q9HCM9 VMAC-201ENST00000339485 2254 ntAPPRIS P1 TSL 1 (best) BASIC17.64■□□□□ 0.41
TRIM39Q9HCM9 KRT6A-201ENST00000330722 2310 ntAPPRIS P1 TSL 1 (best) BASIC17.64■□□□□ 0.41
TRIM39Q9HCM9 MCU-201ENST00000357157 2874 ntTSL 1 (best) BASIC17.64■□□□□ 0.41
TRIM39Q9HCM9 HYAL1-204ENST00000395144 2081 ntAPPRIS P1 TSL 1 (best) BASIC17.64■□□□□ 0.41
TRIM39Q9HCM9 ZMYND11-214ENST00000509513 2065 ntTSL 1 (best) BASIC17.64■□□□□ 0.41
TRIM39Q9HCM9 SLC22A1-201ENST00000324965 1521 ntTSL 5 BASIC17.64■□□□□ 0.41
TRIM39Q9HCM9 EGFL6-201ENST00000361306 2398 ntAPPRIS P3 TSL 1 (best) BASIC17.64■□□□□ 0.41
TRIM39Q9HCM9 PJA1-202ENST00000374571 2672 ntAPPRIS ALT2 TSL 1 (best) BASIC17.64■□□□□ 0.41
TRIM39Q9HCM9 METTL21C-201ENST00000267273 1088 ntAPPRIS P1 TSL 1 (best) BASIC17.64■□□□□ 0.41
TRIM39Q9HCM9 CDKN1C-201ENST00000380725 1220 ntAPPRIS ALT2 TSL 2 BASIC17.64■□□□□ 0.41
TRIM39Q9HCM9 KRTAP5-11-201ENST00000398530 1021 ntAPPRIS P2 BASIC17.64■□□□□ 0.41
Retrieved 100 of 98,524 protein–RNA pairs in 25.3 ms