Protein–RNA interactions for Protein: Q9BRP4

PAAF1, Proteasomal ATPase-associated factor 1, humanhuman

Predictions only

Length 392 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
PAAF1Q9BRP4 E4F1-201ENST00000301727 2573 ntAPPRIS P1 TSL 1 (best) BASIC18.93■□□□□ 0.62
PAAF1Q9BRP4 LUC7L2-210ENST00000619796 2783 ntTSL 1 (best) BASIC18.93■□□□□ 0.62
PAAF1Q9BRP4 SKOR1-204ENST00000554240 3597 ntAPPRIS ALT2 TSL 5 BASIC18.93■□□□□ 0.62
PAAF1Q9BRP4 LINC00683-201ENST00000578803 2221 ntTSL 2 BASIC18.93■□□□□ 0.62
PAAF1Q9BRP4 ZNF446-203ENST00000594369 2238 ntAPPRIS P2 TSL 1 (best) BASIC18.93■□□□□ 0.62
PAAF1Q9BRP4 SLC47A2-201ENST00000325411 2258 ntAPPRIS P3 TSL 1 (best) BASIC18.93■□□□□ 0.62
PAAF1Q9BRP4 SLC12A9-215ENST00000540482 2269 ntTSL 2 BASIC18.93■□□□□ 0.62
PAAF1Q9BRP4 DNM1-206ENST00000475805 2710 ntAPPRIS ALT1 TSL 2 BASIC18.93■□□□□ 0.62
PAAF1Q9BRP4 AP1AR-202ENST00000309703 2337 ntAPPRIS ALT1 TSL 1 (best) BASIC18.93■□□□□ 0.62
PAAF1Q9BRP4 ZAR1L-201ENST00000345108 1103 ntAPPRIS P1 TSL 1 (best) BASIC18.93■□□□□ 0.62
PAAF1Q9BRP4 GUCA2A-201ENST00000357001 569 ntAPPRIS P1 TSL 1 (best) BASIC18.93■□□□□ 0.62
PAAF1Q9BRP4 RPS9-203ENST00000391752 772 ntAPPRIS P1 TSL 2 BASIC18.93■□□□□ 0.62
PAAF1Q9BRP4 ESR1-204ENST00000406599 1251 ntTSL 1 (best) BASIC18.93■□□□□ 0.62
PAAF1Q9BRP4 RNA5SP415-201ENST00000517246 115 ntBASIC18.93■□□□□ 0.62
PAAF1Q9BRP4 MSRA-206ENST00000521209 814 ntTSL 3 BASIC18.93■□□□□ 0.62
PAAF1Q9BRP4 AC068389.2-201ENST00000529518 430 ntTSL 2 BASIC18.93■□□□□ 0.62
PAAF1Q9BRP4 AC105339.3-201ENST00000560043 636 ntBASIC18.93■□□□□ 0.62
PAAF1Q9BRP4 AC025259.3-201ENST00000564531 542 ntTSL 3 BASIC18.93■□□□□ 0.62
PAAF1Q9BRP4 ANAPC11-210ENST00000574924 722 ntAPPRIS P1 TSL 1 (best) BASIC18.93■□□□□ 0.62
PAAF1Q9BRP4 CYB561-217ENST00000582997 877 ntTSL 5 BASIC18.93■□□□□ 0.62
PAAF1Q9BRP4 RPL27-206ENST00000589913 697 ntAPPRIS P1 TSL 1 (best) BASIC18.93■□□□□ 0.62
PAAF1Q9BRP4 AC006538.3-201ENST00000612495 578 ntBASIC18.93■□□□□ 0.62
PAAF1Q9BRP4 AC117500.6-201ENST00000624871 588 ntBASIC18.93■□□□□ 0.62
PAAF1Q9BRP4 SLC2A8-202ENST00000373360 1937 ntTSL 1 (best) BASIC18.93■□□□□ 0.62
PAAF1Q9BRP4 GTF3C5-202ENST00000372097 2406 ntAPPRIS P3 TSL 1 (best) BASIC18.93■□□□□ 0.62
PAAF1Q9BRP4 ZNF259P1-201ENST00000407656 1365 ntBASIC18.93■□□□□ 0.62
PAAF1Q9BRP4 CYP4F2-201ENST00000011989 2067 ntAPPRIS ALT1 TSL 1 (best) BASIC18.93■□□□□ 0.62
PAAF1Q9BRP4 DUS1L-201ENST00000306796 2068 ntAPPRIS P1 TSL 1 (best) BASIC18.93■□□□□ 0.62
PAAF1Q9BRP4 TCTN1-204ENST00000397659 1885 ntAPPRIS P4 TSL 1 (best) BASIC18.92■□□□□ 0.62
PAAF1Q9BRP4 AZIN2-203ENST00000373441 1443 ntTSL 1 (best) BASIC18.92■□□□□ 0.62
PAAF1Q9BRP4 SHISA5-220ENST00000619810 2385 ntTSL 2 BASIC18.92■□□□□ 0.62
PAAF1Q9BRP4 FAM234A-202ENST00000301679 1936 ntTSL 2 BASIC18.92■□□□□ 0.62
PAAF1Q9BRP4 PIP5K1C-201ENST00000335312 5080 ntAPPRIS P3 TSL 1 (best) BASIC18.92■□□□□ 0.62
PAAF1Q9BRP4 CHGA-202ENST00000334654 1474 ntTSL 1 (best) BASIC18.92■□□□□ 0.62
PAAF1Q9BRP4 TLX2-204ENST00000621092 1452 ntTSL 1 (best) BASIC18.92■□□□□ 0.62
PAAF1Q9BRP4 TMPRSS2-206ENST00000458356 1701 ntAPPRIS P1 TSL 2 BASIC18.92■□□□□ 0.62
PAAF1Q9BRP4 TRAF3-203ENST00000392745 2459 ntAPPRIS P1 TSL 1 (best) BASIC18.92■□□□□ 0.62
PAAF1Q9BRP4 CTSG-201ENST00000216336 886 ntAPPRIS P1 TSL 1 (best) BASIC18.92■□□□□ 0.62
PAAF1Q9BRP4 ATPIF1-201ENST00000335514 494 ntAPPRIS P1 TSL 1 (best) BASIC18.92■□□□□ 0.62
PAAF1Q9BRP4 GAR1-202ENST00000394631 1011 ntAPPRIS P1 TSL 1 (best) BASIC18.92■□□□□ 0.62
PAAF1Q9BRP4 CENPM-203ENST00000402338 1002 ntTSL 2 BASIC18.92■□□□□ 0.62
PAAF1Q9BRP4 CAPG-203ENST00000409670 1183 ntAPPRIS P1 TSL 5 BASIC18.92■□□□□ 0.62
PAAF1Q9BRP4 LAGE3P1-201ENST00000425356 484 ntBASIC18.92■□□□□ 0.62
PAAF1Q9BRP4 NDUFB2-208ENST00000471136 499 ntTSL 3 BASIC18.92■□□□□ 0.62
PAAF1Q9BRP4 FAU-209ENST00000531743 697 ntAPPRIS P1 TSL 1 (best) BASIC18.92■□□□□ 0.62
PAAF1Q9BRP4 AL450267.1-201ENST00000557174 520 ntTSL 5 BASIC18.92■□□□□ 0.62
PAAF1Q9BRP4 KDELC1-201ENST00000376004 2060 ntAPPRIS P1 TSL 1 (best) BASIC18.92■□□□□ 0.62
PAAF1Q9BRP4 PDLIM7-203ENST00000359895 1567 ntAPPRIS ALT2 TSL 1 (best) BASIC18.92■□□□□ 0.62
PAAF1Q9BRP4 HIC1-202ENST00000399849 3156 ntTSL 1 (best) BASIC18.92■□□□□ 0.62
PAAF1Q9BRP4 NRG2-202ENST00000289422 2923 ntTSL 5 BASIC18.92■□□□□ 0.62
PAAF1Q9BRP4 ATRIP-203ENST00000357105 2403 ntTSL 2 BASIC18.92■□□□□ 0.62
PAAF1Q9BRP4 MMD2-202ENST00000404774 2415 ntTSL 1 (best) BASIC18.92■□□□□ 0.62
PAAF1Q9BRP4 MRPL10-203ENST00000414011 1622 ntTSL 3 BASIC18.92■□□□□ 0.62
PAAF1Q9BRP4 CMTM3-201ENST00000361909 2159 ntAPPRIS P1 TSL 1 (best) BASIC18.92■□□□□ 0.62
PAAF1Q9BRP4 FAM91A1-207ENST00000521166 2706 ntTSL 2 BASIC18.92■□□□□ 0.62
PAAF1Q9BRP4 MARVELD3-202ENST00000299952 2214 ntAPPRIS ALT2 TSL 2 BASIC18.92■□□□□ 0.62
PAAF1Q9BRP4 GLS-201ENST00000320717 4834 ntAPPRIS P3 TSL 1 (best) BASIC18.91■□□□□ 0.62
PAAF1Q9BRP4 LY6E-207ENST00000520466 1419 ntAPPRIS P2 TSL 2 BASIC18.91■□□□□ 0.62
PAAF1Q9BRP4 NFKBID-210ENST00000606253 1736 ntAPPRIS ALT2 TSL 1 (best) BASIC18.91■□□□□ 0.62
PAAF1Q9BRP4 BIRC8-201ENST00000426466 2026 ntAPPRIS P1 BASIC18.91■□□□□ 0.62
PAAF1Q9BRP4 GCH1-207ENST00000622544 2923 ntAPPRIS P1 TSL 1 (best) BASIC18.91■□□□□ 0.62
PAAF1Q9BRP4 AC105001.2-201ENST00000554914 1753 ntAPPRIS P1 TSL 2 BASIC18.91■□□□□ 0.62
PAAF1Q9BRP4 PEX13-204ENST00000444100 1533 ntTSL 1 (best) BASIC18.91■□□□□ 0.62
PAAF1Q9BRP4 ADAMTS19-205ENST00000638972 5089 ntAPPRIS P1 TSL 1 (best) BASIC18.91■□□□□ 0.62
PAAF1Q9BRP4 DNAH14-205ENST00000366850 1103 ntTSL 5 BASIC18.91■□□□□ 0.62
PAAF1Q9BRP4 INIP-202ENST00000374236 874 ntTSL 2 BASIC18.91■□□□□ 0.62
PAAF1Q9BRP4 MSANTD3-201ENST00000374885 786 ntTSL 2 BASIC18.91■□□□□ 0.62
PAAF1Q9BRP4 TFPT-203ENST00000391759 1205 ntAPPRIS P3 TSL 1 (best) BASIC18.91■□□□□ 0.62
PAAF1Q9BRP4 FABP5-202ENST00000396359 986 ntTSL 5 BASIC18.91■□□□□ 0.62
PAAF1Q9BRP4 PRYP5-201ENST00000451909 266 ntBASIC18.91■□□□□ 0.62
PAAF1Q9BRP4 UNC93B6-202ENST00000528242 690 ntBASIC18.91■□□□□ 0.62
PAAF1Q9BRP4 AC109462.3-201ENST00000573934 613 ntBASIC18.91■□□□□ 0.62
PAAF1Q9BRP4 AC018529.2-201ENST00000612024 828 ntTSL 4 BASIC18.91■□□□□ 0.62
PAAF1Q9BRP4 HMGN3-203ENST00000620514 1010 ntTSL 3 BASIC18.91■□□□□ 0.62
PAAF1Q9BRP4 INPP4A-201ENST00000074304 6752 ntTSL 5 BASIC18.91■□□□□ 0.62
PAAF1Q9BRP4 TMEM59L-201ENST00000262817 1613 ntAPPRIS P1 TSL 1 (best) BASIC18.91■□□□□ 0.62
PAAF1Q9BRP4 CHD1L-204ENST00000431239 2907 ntTSL 5 BASIC18.91■□□□□ 0.62
PAAF1Q9BRP4 MSANTD1-201ENST00000438480 2922 ntAPPRIS P3 TSL 5 BASIC18.91■□□□□ 0.62
PAAF1Q9BRP4 PC-208ENST00000529047 1607 ntTSL 3 BASIC18.91■□□□□ 0.62
PAAF1Q9BRP4 CLN3-216ENST00000565316 1318 ntTSL 1 (best) BASIC18.91■□□□□ 0.62
PAAF1Q9BRP4 C2CD2L-205ENST00000528586 2320 ntTSL 2 BASIC18.91■□□□□ 0.62
PAAF1Q9BRP4 PHF2-202ENST00000375376 3045 ntTSL 5 BASIC18.91■□□□□ 0.62
PAAF1Q9BRP4 TOM1L2-207ENST00000535933 1748 ntTSL 2 BASIC18.91■□□□□ 0.62
PAAF1Q9BRP4 ENTPD2-202ENST00000355097 2095 ntAPPRIS P1 TSL 1 (best) BASIC18.91■□□□□ 0.62
PAAF1Q9BRP4 DTX3-204ENST00000548804 2067 ntAPPRIS P3 TSL 5 BASIC18.91■□□□□ 0.62
PAAF1Q9BRP4 CORO1C-204ENST00000541050 2487 ntAPPRIS P1 TSL 2 BASIC18.91■□□□□ 0.62
PAAF1Q9BRP4 SLC35A3-205ENST00000465289 5696 ntAPPRIS P1 TSL 5 BASIC18.91■□□□□ 0.62
PAAF1Q9BRP4 NABP2-201ENST00000267023 1417 ntAPPRIS P1 TSL 1 (best) BASIC18.91■□□□□ 0.62
PAAF1Q9BRP4 CLDND1-204ENST00000394185 2159 ntAPPRIS P1 TSL 5 BASIC18.91■□□□□ 0.62
PAAF1Q9BRP4 CPT2-207ENST00000636867 2643 ntTSL 5 BASIC18.9■□□□□ 0.62
PAAF1Q9BRP4 FUT8-AS1-201ENST00000621019 1521 ntBASIC18.9■□□□□ 0.62
PAAF1Q9BRP4 BCS1L-202ENST00000392109 1583 ntAPPRIS P1 TSL 1 (best) BASIC18.9■□□□□ 0.62
PAAF1Q9BRP4 BCS1L-204ENST00000392111 1584 ntAPPRIS P1 TSL 1 (best) BASIC18.9■□□□□ 0.62
PAAF1Q9BRP4 ORC5-201ENST00000297431 1958 ntAPPRIS P1 TSL 1 (best) BASIC18.9■□□□□ 0.62
PAAF1Q9BRP4 MIS18BP1-212ENST00000627697 1950 ntTSL 5 BASIC18.9■□□□□ 0.62
PAAF1Q9BRP4 C9orf43-202ENST00000374165 2049 ntAPPRIS P1 TSL 1 (best) BASIC18.9■□□□□ 0.62
PAAF1Q9BRP4 MYO19-225ENST00000621344 1640 ntTSL 2 BASIC18.9■□□□□ 0.62
PAAF1Q9BRP4 TRIM60-203ENST00000508504 1674 ntAPPRIS P1 TSL 1 (best) BASIC18.9■□□□□ 0.62
PAAF1Q9BRP4 SIGLEC8-202ENST00000340550 1293 ntTSL 1 (best) BASIC18.9■□□□□ 0.62
PAAF1Q9BRP4 PSMA7-201ENST00000370858 925 ntTSL 2 BASIC18.9■□□□□ 0.62
Retrieved 100 of 98,524 protein–RNA pairs in 37.1 ms