Protein–RNA interactions for Protein: Q8WW32

HMGB4, High mobility group protein B4, humanhuman

Predictions only

Length 186 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HMGB4Q8WW32 BRCC3-202ENST00000340647 1101 ntAPPRIS P2 TSL 2 BASIC17.81■□□□□ 0.44
HMGB4Q8WW32 AL512785.2-202ENST00000367932 830 ntTSL 4 BASIC17.81■□□□□ 0.44
HMGB4Q8WW32 TMEM59-202ENST00000371337 600 ntTSL 2 BASIC17.81■□□□□ 0.44
HMGB4Q8WW32 HIST1H2BL-201ENST00000377401 488 ntAPPRIS P1 BASIC17.81■□□□□ 0.44
HMGB4Q8WW32 SLC4A1APP2-201ENST00000424054 1259 ntBASIC17.81■□□□□ 0.44
HMGB4Q8WW32 AC004967.1-201ENST00000453589 447 ntBASIC17.81■□□□□ 0.44
HMGB4Q8WW32 AC002116.1-201ENST00000473572 1130 ntTSL 2 BASIC17.81■□□□□ 0.44
HMGB4Q8WW32 AL133375.1-201ENST00000500590 980 ntTSL 5 BASIC17.81■□□□□ 0.44
HMGB4Q8WW32 AC136632.2-201ENST00000512891 861 ntBASIC17.81■□□□□ 0.44
HMGB4Q8WW32 AP000442.1-201ENST00000533552 769 ntTSL 5 BASIC17.81■□□□□ 0.44
HMGB4Q8WW32 AP000763.4-201ENST00000544674 752 ntTSL 5 BASIC17.81■□□□□ 0.44
HMGB4Q8WW32 TMEM220-203ENST00000578345 559 ntAPPRIS ALT2 TSL 2 BASIC17.81■□□□□ 0.44
HMGB4Q8WW32 ARHGDIA-208ENST00000581876 709 ntTSL 3 BASIC17.81■□□□□ 0.44
HMGB4Q8WW32 AP001160.2-201ENST00000596071 487 ntBASIC17.81■□□□□ 0.44
HMGB4Q8WW32 AC064836.3-201ENST00000607928 673 ntBASIC17.81■□□□□ 0.44
HMGB4Q8WW32 PGM5P2-202ENST00000637225 1043 ntBASIC17.81■□□□□ 0.44
HMGB4Q8WW32 CFC1-202ENST00000615342 1554 ntTSL 5 BASIC17.81■□□□□ 0.44
HMGB4Q8WW32 PCDHAC2-201ENST00000289269 5963 ntAPPRIS P1 TSL 1 (best) BASIC17.81■□□□□ 0.44
HMGB4Q8WW32 SYBU-232ENST00000533171 2498 ntAPPRIS ALT2 TSL 2 BASIC17.81■□□□□ 0.44
HMGB4Q8WW32 GPANK1-204ENST00000375900 1814 ntAPPRIS P1 TSL 2 BASIC17.81■□□□□ 0.44
HMGB4Q8WW32 ENTPD6-201ENST00000354989 2708 ntAPPRIS ALT2 TSL 1 (best) BASIC17.81■□□□□ 0.44
HMGB4Q8WW32 DAG1-220ENST00000539901 5665 ntAPPRIS P1 TSL 5 BASIC17.81■□□□□ 0.44
HMGB4Q8WW32 SIRPAP1-201ENST00000448467 1770 ntBASIC17.81■□□□□ 0.44
HMGB4Q8WW32 COQ9-210ENST00000567072 1482 ntTSL 3 BASIC17.81■□□□□ 0.44
HMGB4Q8WW32 CLINT1-207ENST00000523908 2346 ntAPPRIS ALT1 TSL 1 (best) BASIC17.81■□□□□ 0.44
HMGB4Q8WW32 LDHAL6A-202ENST00000396213 1716 ntAPPRIS P1 TSL 1 (best) BASIC17.81■□□□□ 0.44
HMGB4Q8WW32 LPCAT3-201ENST00000261407 2268 ntAPPRIS P1 TSL 1 (best) BASIC17.81■□□□□ 0.44
HMGB4Q8WW32 LCA10-201ENST00000618311 1392 ntTSL 2 BASIC17.8■□□□□ 0.44
HMGB4Q8WW32 CCDC78-201ENST00000293889 1611 ntAPPRIS P2 TSL 1 (best) BASIC17.8■□□□□ 0.44
HMGB4Q8WW32 ARNT-202ENST00000358595 4887 ntAPPRIS P3 TSL 1 (best) BASIC17.8■□□□□ 0.44
HMGB4Q8WW32 AC093010.1-201ENST00000473625 1624 ntBASIC17.8■□□□□ 0.44
HMGB4Q8WW32 P2RY6-209ENST00000540342 1611 ntAPPRIS P1 TSL 2 BASIC17.8■□□□□ 0.44
HMGB4Q8WW32 AC022898.2-201ENST00000616822 1312 ntBASIC17.8■□□□□ 0.44
HMGB4Q8WW32 UBN1-201ENST00000262376 6252 ntAPPRIS P1 TSL 1 (best) BASIC17.8■□□□□ 0.44
HMGB4Q8WW32 AC020763.4-201ENST00000623414 4170 ntBASIC17.8■□□□□ 0.44
HMGB4Q8WW32 NUDC-201ENST00000321265 1800 ntAPPRIS P1 TSL 1 (best) BASIC17.8■□□□□ 0.44
HMGB4Q8WW32 RASSF1-210ENST00000616212 1842 ntTSL 2 BASIC17.8■□□□□ 0.44
HMGB4Q8WW32 SMN1-201ENST00000351205 900 ntAPPRIS P3 TSL 1 (best) BASIC17.8■□□□□ 0.44
HMGB4Q8WW32 PAXX-201ENST00000371620 812 ntAPPRIS P1 TSL 1 (best) BASIC17.8■□□□□ 0.44
HMGB4Q8WW32 MRPS16-201ENST00000372940 866 ntTSL 2 BASIC17.8■□□□□ 0.44
HMGB4Q8WW32 SMN2-201ENST00000380741 900 ntAPPRIS P4 TSL 1 (best) BASIC17.8■□□□□ 0.44
HMGB4Q8WW32 CD99-204ENST00000381187 892 ntAPPRIS ALT2 TSL 2 BASIC17.8■□□□□ 0.44
HMGB4Q8WW32 PTTG1-202ENST00000393964 1070 ntAPPRIS P1 TSL 1 (best) BASIC17.8■□□□□ 0.44
HMGB4Q8WW32 MOB1B-202ENST00000396051 1107 ntTSL 2 BASIC17.8■□□□□ 0.44
HMGB4Q8WW32 AGTRAP-205ENST00000400895 786 ntTSL 2 BASIC17.8■□□□□ 0.44
HMGB4Q8WW32 AC004832.2-201ENST00000426397 482 ntBASIC17.8■□□□□ 0.44
HMGB4Q8WW32 AC103564.2-201ENST00000432853 1299 ntBASIC17.8■□□□□ 0.44
HMGB4Q8WW32 RPS27L-204ENST00000455271 923 ntTSL 1 (best) BASIC17.8■□□□□ 0.44
HMGB4Q8WW32 AC012363.1-201ENST00000455707 575 ntTSL 4 BASIC17.8■□□□□ 0.44
HMGB4Q8WW32 AC135050.2-203ENST00000529564 725 ntAPPRIS P1 TSL 4 BASIC17.8■□□□□ 0.44
HMGB4Q8WW32 ADA-207ENST00000537820 1128 ntTSL 1 (best) BASIC17.8■□□□□ 0.44
HMGB4Q8WW32 PAX9-204ENST00000554201 1289 ntTSL 2 BASIC17.8■□□□□ 0.44
HMGB4Q8WW32 AL121820.2-201ENST00000556301 279 ntTSL 2 BASIC17.8■□□□□ 0.44
HMGB4Q8WW32 AC106782.2-201ENST00000563252 992 ntTSL 3 BASIC17.8■□□□□ 0.44
HMGB4Q8WW32 MIR22HG-204ENST00000571595 767 ntTSL 5 BASIC17.8■□□□□ 0.44
HMGB4Q8WW32 LCE1E-203ENST00000619588 267 ntAPPRIS ALT2 TSL 5 BASIC17.8■□□□□ 0.44
HMGB4Q8WW32 AL662799.1-201ENST00000630418 496 ntTSL 5 BASIC17.8■□□□□ 0.44
HMGB4Q8WW32 SMN2-216ENST00000638794 846 ntAPPRIS ALT2 TSL 5 BASIC17.8■□□□□ 0.44
HMGB4Q8WW32 AC079781.4-201ENST00000641908 219 ntBASIC17.8■□□□□ 0.44
HMGB4Q8WW32 BMP8B-201ENST00000372827 4822 ntAPPRIS P1 TSL 1 (best) BASIC17.8■□□□□ 0.44
HMGB4Q8WW32 CASR-204ENST00000638421 5088 ntAPPRIS P1 TSL 5 BASIC17.8■□□□□ 0.44
HMGB4Q8WW32 CRELD1-206ENST00000452070 1778 ntAPPRIS P1 TSL 2 BASIC17.8■□□□□ 0.44
HMGB4Q8WW32 NHLH2-201ENST00000320238 2512 ntAPPRIS P1 TSL 1 (best) BASIC17.8■□□□□ 0.44
HMGB4Q8WW32 FCMR-201ENST00000367091 1950 ntAPPRIS P3 TSL 1 (best) BASIC17.8■□□□□ 0.44
HMGB4Q8WW32 PTCHD3-202ENST00000622555 1720 ntTSL 1 (best) BASIC17.8■□□□□ 0.44
HMGB4Q8WW32 FCER2-202ENST00000360067 1482 ntAPPRIS ALT2 TSL 5 BASIC17.8■□□□□ 0.44
HMGB4Q8WW32 AC083864.1-201ENST00000381493 1497 ntTSL 1 (best) BASIC17.8■□□□□ 0.44
HMGB4Q8WW32 ETV4-201ENST00000319349 2429 ntAPPRIS P1 TSL 1 (best) BASIC17.8■□□□□ 0.44
HMGB4Q8WW32 TBC1D3I-202ENST00000618620 1900 ntTSL 1 (best) BASIC17.8■□□□□ 0.44
HMGB4Q8WW32 LMCD1-204ENST00000426878 1431 ntTSL 2 BASIC17.8■□□□□ 0.44
HMGB4Q8WW32 NOTCH2NL-201ENST00000362074 1874 ntAPPRIS P2 TSL 1 (best) BASIC17.8■□□□□ 0.44
HMGB4Q8WW32 ADM-208ENST00000534464 1640 ntTSL 2 BASIC17.8■□□□□ 0.44
HMGB4Q8WW32 HOXA9-201ENST00000343483 2060 ntAPPRIS P1 TSL 1 (best) BASIC17.79■□□□□ 0.44
HMGB4Q8WW32 ZNF213-202ENST00000416391 2996 ntAPPRIS P1 TSL 5 BASIC17.79■□□□□ 0.44
HMGB4Q8WW32 ATG3-201ENST00000283290 1570 ntAPPRIS P1 TSL 1 (best) BASIC17.79■□□□□ 0.44
HMGB4Q8WW32 EGR3-204ENST00000522910 1553 ntAPPRIS ALT1 TSL 2 BASIC17.79■□□□□ 0.44
HMGB4Q8WW32 TRIM41-202ENST00000351937 2696 ntTSL 1 (best) BASIC17.79■□□□□ 0.44
HMGB4Q8WW32 MUTYH-202ENST00000355498 1776 ntAPPRIS ALT2 TSL 1 (best) BASIC17.79■□□□□ 0.44
HMGB4Q8WW32 AC105001.2-201ENST00000554914 1753 ntAPPRIS P1 TSL 2 BASIC17.79■□□□□ 0.44
HMGB4Q8WW32 AL031598.1-201ENST00000561511 1773 ntBASIC17.79■□□□□ 0.44
HMGB4Q8WW32 ZNF280B-203ENST00000626650 5721 ntAPPRIS P1 TSL 2 BASIC17.79■□□□□ 0.44
HMGB4Q8WW32 SMAD7-201ENST00000262158 3087 ntAPPRIS P3 TSL 1 (best) BASIC17.79■□□□□ 0.44
HMGB4Q8WW32 ADAD1-203ENST00000388725 1918 ntTSL 2 BASIC17.79■□□□□ 0.44
HMGB4Q8WW32 MFSD2A-203ENST00000420632 1914 ntTSL 2 BASIC17.79■□□□□ 0.44
HMGB4Q8WW32 CST3-201ENST00000376925 873 ntAPPRIS P1 TSL 1 (best) BASIC17.79■□□□□ 0.44
HMGB4Q8WW32 ATP5G3-202ENST00000392541 842 ntAPPRIS P1 TSL 1 (best) BASIC17.79■□□□□ 0.44
HMGB4Q8WW32 AC073621.1-201ENST00000392730 636 ntBASIC17.79■□□□□ 0.44
HMGB4Q8WW32 PON3-205ENST00000451904 1053 ntTSL 3 BASIC17.79■□□□□ 0.44
HMGB4Q8WW32 KNCN-203ENST00000481882 1037 ntAPPRIS ALT2 TSL 5 BASIC17.79■□□□□ 0.44
HMGB4Q8WW32 CDKN2A-209ENST00000498628 926 ntTSL 2 BASIC17.79■□□□□ 0.44
HMGB4Q8WW32 AC027117.2-201ENST00000522768 510 ntTSL 3 BASIC17.79■□□□□ 0.44
HMGB4Q8WW32 ETFA-208ENST00000559602 792 ntTSL 3 BASIC17.79■□□□□ 0.44
HMGB4Q8WW32 AC092718.3-202ENST00000564536 1032 ntAPPRIS P5 TSL 5 BASIC17.79■□□□□ 0.44
HMGB4Q8WW32 AC127496.4-201ENST00000571591 549 ntTSL 4 BASIC17.79■□□□□ 0.44
HMGB4Q8WW32 COPE-211ENST00000600932 1144 ntTSL 5 BASIC17.79■□□□□ 0.44
HMGB4Q8WW32 CR381653.1-203ENST00000625153 577 ntTSL 5 BASIC17.79■□□□□ 0.44
HMGB4Q8WW32 AC134684.3-201ENST00000641758 218 ntBASIC17.79■□□□□ 0.44
HMGB4Q8WW32 LTBP3-202ENST00000322147 4046 ntAPPRIS P3 TSL 1 (best) BASIC17.79■□□□□ 0.44
HMGB4Q8WW32 PSMG4-209ENST00000473000 4603 ntTSL 2 BASIC17.79■□□□□ 0.44
HMGB4Q8WW32 SLMAP-201ENST00000295951 5433 ntAPPRIS P1 TSL 5 BASIC17.79■□□□□ 0.44
Retrieved 100 of 98,524 protein–RNA pairs in 41.3 ms