Protein–RNA interactions for Protein: Q8NEF3

CCDC112, Coiled-coil domain-containing protein 112, humanhuman

Predictions only

Length 446 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC112Q8NEF3 SAMD11-214ENST00000618323 2159 ntTSL 5 BASIC19.68■□□□□ 0.74
CCDC112Q8NEF3 MEG3-205ENST00000412736 1615 ntTSL 2 BASIC19.68■□□□□ 0.74
CCDC112Q8NEF3 OCIAD1-204ENST00000425583 1915 ntTSL 3 BASIC19.68■□□□□ 0.74
CCDC112Q8NEF3 APOA5-203ENST00000542499 1929 ntAPPRIS P1 TSL 5 BASIC19.68■□□□□ 0.74
CCDC112Q8NEF3 CGB7-202ENST00000596965 1949 ntAPPRIS P1 TSL 2 BASIC19.68■□□□□ 0.74
CCDC112Q8NEF3 AC105020.1-201ENST00000435356 2205 ntBASIC19.68■□□□□ 0.74
CCDC112Q8NEF3 LUC7L3-201ENST00000240304 1972 ntAPPRIS P1 TSL 2 BASIC19.68■□□□□ 0.74
CCDC112Q8NEF3 NIPA2-201ENST00000337451 3233 ntAPPRIS P1 TSL 5 BASIC19.68■□□□□ 0.74
CCDC112Q8NEF3 ITGA9-201ENST00000264741 7889 ntAPPRIS P1 TSL 1 (best) BASIC19.68■□□□□ 0.74
CCDC112Q8NEF3 UNC13A-205ENST00000551649 6052 ntAPPRIS ALT2 TSL 5 BASIC19.68■□□□□ 0.74
CCDC112Q8NEF3 PRRT2-216ENST00000637403 2033 ntTSL 5 BASIC19.68■□□□□ 0.74
CCDC112Q8NEF3 EWSAT1-206ENST00000558922 1725 ntTSL 5 BASIC19.68■□□□□ 0.74
CCDC112Q8NEF3 SH2D3C-205ENST00000420366 2682 ntTSL 2 BASIC19.68■□□□□ 0.74
CCDC112Q8NEF3 LINC00595-204ENST00000434974 2692 ntTSL 2 BASIC19.68■□□□□ 0.74
CCDC112Q8NEF3 RHNO1-209ENST00000618250 2070 ntAPPRIS P3 TSL 4 BASIC19.67■□□□□ 0.74
CCDC112Q8NEF3 BMI1-201ENST00000376663 3428 ntAPPRIS P1 TSL 1 (best) BASIC19.67■□□□□ 0.74
CCDC112Q8NEF3 CENPN-202ENST00000305850 2481 ntAPPRIS P1 TSL 1 (best) BASIC19.67■□□□□ 0.74
CCDC112Q8NEF3 MED17-201ENST00000251871 5142 ntAPPRIS P1 TSL 1 (best) BASIC19.67■□□□□ 0.74
CCDC112Q8NEF3 CTSL-203ENST00000343150 2177 ntAPPRIS P1 TSL 1 (best) BASIC19.67■□□□□ 0.74
CCDC112Q8NEF3 DOC2GP-204ENST00000639052 2548 ntBASIC19.67■□□□□ 0.74
CCDC112Q8NEF3 DMTN-223ENST00000523782 2235 ntAPPRIS P1 TSL 5 BASIC19.67■□□□□ 0.74
CCDC112Q8NEF3 SCYL1-214ENST00000533862 2570 ntTSL 5 BASIC19.67■□□□□ 0.74
CCDC112Q8NEF3 ACSS1-201ENST00000323482 3680 ntAPPRIS P1 TSL 1 (best) BASIC19.67■□□□□ 0.74
CCDC112Q8NEF3 LRRC23-209ENST00000443597 1628 ntAPPRIS P4 TSL 1 (best) BASIC19.67■□□□□ 0.74
CCDC112Q8NEF3 COX7A2L-201ENST00000234301 1112 ntAPPRIS P1 TSL 1 (best) BASIC19.67■□□□□ 0.74
CCDC112Q8NEF3 NT5C1A-201ENST00000235628 1107 ntAPPRIS P1 TSL 1 (best) BASIC19.67■□□□□ 0.74
CCDC112Q8NEF3 PMAIP1-201ENST00000269518 1262 ntTSL 1 (best) BASIC19.67■□□□□ 0.74
CCDC112Q8NEF3 NMRK1-201ENST00000361092 1185 ntAPPRIS P1 TSL 1 (best) BASIC19.67■□□□□ 0.74
CCDC112Q8NEF3 UBE2SP1-201ENST00000450587 669 ntBASIC19.67■□□□□ 0.74
CCDC112Q8NEF3 AP002982.1-201ENST00000492365 877 ntBASIC19.67■□□□□ 0.74
CCDC112Q8NEF3 DUTP2-201ENST00000519164 463 ntBASIC19.67■□□□□ 0.74
CCDC112Q8NEF3 EBLN3P-205ENST00000629870 958 ntTSL 3 BASIC19.67■□□□□ 0.74
CCDC112Q8NEF3 TSTD3-202ENST00000636394 336 ntAPPRIS ALT2 TSL 3 BASIC19.67■□□□□ 0.74
CCDC112Q8NEF3 AL023875.1-201ENST00000640777 796 ntBASIC19.67■□□□□ 0.74
CCDC112Q8NEF3 TSPAN17-209ENST00000515708 2361 ntAPPRIS P1 TSL 1 (best) BASIC19.67■□□□□ 0.74
CCDC112Q8NEF3 ZNF84-201ENST00000327668 7162 ntAPPRIS P2 TSL 1 (best) BASIC19.67■□□□□ 0.74
CCDC112Q8NEF3 SSFA2-201ENST00000320370 4965 ntAPPRIS P3 TSL 1 (best) BASIC19.67■□□□□ 0.74
CCDC112Q8NEF3 TRMT44-201ENST00000389737 2799 ntAPPRIS P2 TSL 5 BASIC19.67■□□□□ 0.74
CCDC112Q8NEF3 TSSC4-201ENST00000333256 1686 ntAPPRIS P3 TSL 1 (best) BASIC19.67■□□□□ 0.74
CCDC112Q8NEF3 NKX2-2-201ENST00000377142 2092 ntAPPRIS P1 TSL 1 (best) BASIC19.67■□□□□ 0.74
CCDC112Q8NEF3 RDH8-203ENST00000591589 1715 ntAPPRIS P1 TSL 1 (best) BASIC19.67■□□□□ 0.74
CCDC112Q8NEF3 GAS7-203ENST00000432992 4970 ntAPPRIS P1 TSL 1 (best) BASIC19.67■□□□□ 0.74
CCDC112Q8NEF3 FDXR-205ENST00000544854 1827 ntTSL 2 BASIC19.67■□□□□ 0.74
CCDC112Q8NEF3 AC074117.1-201ENST00000447070 3060 ntTSL 2 BASIC19.67■□□□□ 0.74
CCDC112Q8NEF3 CAP2-208ENST00000611958 2686 ntTSL 2 BASIC19.67■□□□□ 0.74
CCDC112Q8NEF3 SLC25A29-215ENST00000556505 1540 ntTSL 2 BASIC19.66■□□□□ 0.74
CCDC112Q8NEF3 ELFN2-208ENST00000430883 1970 ntTSL 2 BASIC19.66■□□□□ 0.74
CCDC112Q8NEF3 ZNF703-201ENST00000331569 3349 ntAPPRIS P1 TSL 1 (best) BASIC19.66■□□□□ 0.74
CCDC112Q8NEF3 PACS2-202ENST00000430725 2944 ntTSL 1 (best) BASIC19.66■□□□□ 0.74
CCDC112Q8NEF3 SYNGR2-206ENST00000589711 2041 ntTSL 5 BASIC19.66■□□□□ 0.74
CCDC112Q8NEF3 LRRD1-201ENST00000343318 2073 ntTSL 1 (best) BASIC19.66■□□□□ 0.74
CCDC112Q8NEF3 NUP62-211ENST00000597029 2053 ntAPPRIS P1 TSL 1 (best) BASIC19.66■□□□□ 0.74
CCDC112Q8NEF3 RDH10-201ENST00000240285 3949 ntAPPRIS P1 TSL 1 (best) BASIC19.66■□□□□ 0.74
CCDC112Q8NEF3 LINC01126-201ENST00000623515 1646 ntBASIC19.66■□□□□ 0.74
CCDC112Q8NEF3 CROCCP3-201ENST00000263511 5368 ntTSL 1 (best) BASIC19.66■□□□□ 0.74
CCDC112Q8NEF3 REPS1-208ENST00000450536 4537 ntAPPRIS ALT1 TSL 1 (best) BASIC19.66■□□□□ 0.74
CCDC112Q8NEF3 ITPK1-210ENST00000556603 3174 ntAPPRIS P1 TSL 1 (best) BASIC19.66■□□□□ 0.74
CCDC112Q8NEF3 ORAOV1-206ENST00000536870 2274 ntTSL 1 (best) BASIC19.66■□□□□ 0.74
CCDC112Q8NEF3 RPP25L-201ENST00000297613 1092 ntAPPRIS P1 TSL 2 BASIC19.66■□□□□ 0.74
CCDC112Q8NEF3 AC008040.2-201ENST00000461049 708 ntBASIC19.66■□□□□ 0.74
CCDC112Q8NEF3 NDUFB2-203ENST00000461457 559 ntTSL 3 BASIC19.66■□□□□ 0.74
CCDC112Q8NEF3 DVL1-202ENST00000378891 2926 ntAPPRIS P3 TSL 1 (best) BASIC19.66■□□□□ 0.74
CCDC112Q8NEF3 CFL1-203ENST00000525451 1878 ntAPPRIS P1 TSL 2 BASIC19.66■□□□□ 0.74
CCDC112Q8NEF3 PPFIA3-201ENST00000334186 4733 ntAPPRIS P1 TSL 1 (best) BASIC19.66■□□□□ 0.74
CCDC112Q8NEF3 CHAT-205ENST00000395562 2528 ntAPPRIS ALT2 TSL 1 (best) BASIC19.66■□□□□ 0.74
CCDC112Q8NEF3 ASB18-201ENST00000409749 1401 ntAPPRIS P1 TSL 1 (best) BASIC19.66■□□□□ 0.74
CCDC112Q8NEF3 TBC1D30-203ENST00000539867 2594 ntAPPRIS P1 TSL 1 (best) BASIC19.66■□□□□ 0.74
CCDC112Q8NEF3 MRGPRF-AS1-201ENST00000538407 1490 ntTSL 1 (best) BASIC19.66■□□□□ 0.74
CCDC112Q8NEF3 SARS2-201ENST00000221431 2057 ntAPPRIS P2 TSL 1 (best) BASIC19.66■□□□□ 0.74
CCDC112Q8NEF3 HNRNPA3-201ENST00000392524 2067 ntAPPRIS P3 TSL 5 BASIC19.66■□□□□ 0.74
CCDC112Q8NEF3 MDGA2-202ENST00000399232 5075 ntAPPRIS ALT2 TSL 1 (best) BASIC19.66■□□□□ 0.74
CCDC112Q8NEF3 SH3BP5-202ENST00000383791 2822 ntAPPRIS P1 TSL 1 (best) BASIC19.66■□□□□ 0.74
CCDC112Q8NEF3 AC036111.1-201ENST00000533973 1582 ntBASIC19.66■□□□□ 0.74
CCDC112Q8NEF3 SACS-AS1-201ENST00000443092 2234 ntTSL 2 BASIC19.66■□□□□ 0.74
CCDC112Q8NEF3 ZBTB16-202ENST00000392996 2287 ntAPPRIS P1 TSL 1 (best) BASIC19.65■□□□□ 0.74
CCDC112Q8NEF3 TLE2-204ENST00000455444 2253 ntTSL 5 BASIC19.65■□□□□ 0.74
CCDC112Q8NEF3 SOCS2-AS1-202ENST00000500986 1655 ntTSL 2 BASIC19.65■□□□□ 0.74
CCDC112Q8NEF3 TMEM59L-205ENST00000600490 1717 ntAPPRIS P1 TSL 5 BASIC19.65■□□□□ 0.74
CCDC112Q8NEF3 MEX3C-204ENST00000616921 3269 ntAPPRIS ALT2 TSL 1 (best) BASIC19.65■□□□□ 0.74
CCDC112Q8NEF3 C7orf31-201ENST00000283905 2673 ntAPPRIS P1 TSL 1 (best) BASIC19.65■□□□□ 0.74
CCDC112Q8NEF3 MAP4K3-201ENST00000263881 4362 ntAPPRIS P1 TSL 1 (best) BASIC19.65■□□□□ 0.74
CCDC112Q8NEF3 DFNA5-203ENST00000409970 2005 ntTSL 5 BASIC19.65■□□□□ 0.74
CCDC112Q8NEF3 CXXC1-201ENST00000285106 2936 ntAPPRIS P3 TSL 1 (best) BASIC19.65■□□□□ 0.74
CCDC112Q8NEF3 MRPL15-201ENST00000260102 1147 ntAPPRIS P1 TSL 1 (best) BASIC19.65■□□□□ 0.74
CCDC112Q8NEF3 MTHFD1L-201ENST00000367307 1049 ntTSL 1 (best) BASIC19.65■□□□□ 0.74
CCDC112Q8NEF3 TMEM35B-201ENST00000373337 922 ntAPPRIS P1 TSL 1 (best) BASIC19.65■□□□□ 0.74
CCDC112Q8NEF3 SLC35A2-202ENST00000376512 903 ntTSL 2 BASIC19.65■□□□□ 0.74
CCDC112Q8NEF3 MDK-205ENST00000405308 1166 ntAPPRIS P2 TSL 2 BASIC19.65■□□□□ 0.74
CCDC112Q8NEF3 MTFP1-203ENST00000407550 912 ntTSL 2 BASIC19.65■□□□□ 0.74
CCDC112Q8NEF3 FAM131A-208ENST00000453072 1038 ntTSL 2 BASIC19.65■□□□□ 0.74
CCDC112Q8NEF3 RARRES1-204ENST00000479756 839 ntTSL 1 (best) BASIC19.65■□□□□ 0.74
CCDC112Q8NEF3 IAH1-215ENST00000497473 1266 ntAPPRIS P1 TSL 1 (best) BASIC19.65■□□□□ 0.74
CCDC112Q8NEF3 AC073912.1-201ENST00000546264 587 ntTSL 3 BASIC19.65■□□□□ 0.74
CCDC112Q8NEF3 CLN6-206ENST00000565471 1075 ntTSL 2 BASIC19.65■□□□□ 0.74
CCDC112Q8NEF3 AC004771.5-201ENST00000575985 542 ntTSL 4 BASIC19.65■□□□□ 0.74
CCDC112Q8NEF3 AC130371.2-201ENST00000619443 611 ntBASIC19.65■□□□□ 0.74
CCDC112Q8NEF3 FAM197Y4-202ENST00000622692 608 ntBASIC19.65■□□□□ 0.74
CCDC112Q8NEF3 AL031985.4-201ENST00000642138 673 ntBASIC19.65■□□□□ 0.74
CCDC112Q8NEF3 ROCK2-209ENST00000616279 6401 ntTSL 1 (best) BASIC19.65■□□□□ 0.74
CCDC112Q8NEF3 MRPL4-202ENST00000307422 1320 ntAPPRIS P2 TSL 5 BASIC19.65■□□□□ 0.74
Retrieved 100 of 98,524 protein–RNA pairs in 33.4 ms