Protein–RNA interactions for Protein: Q8N2C3

DEPDC4, DEP domain-containing protein 4, humanhuman

Predictions only

Length 294 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
DEPDC4Q8N2C3 TJP2-202ENST00000377245 4611 ntAPPRIS P4 TSL 1 (best) BASIC16.63■□□□□ 0.25
DEPDC4Q8N2C3 MIDN-201ENST00000300952 3790 ntAPPRIS P2 TSL 5 BASIC16.63■□□□□ 0.25
DEPDC4Q8N2C3 TSKS-201ENST00000246801 1883 ntAPPRIS P2 TSL 1 (best) BASIC16.63■□□□□ 0.25
DEPDC4Q8N2C3 CRYBB2P1-202ENST00000382734 1364 ntTSL 1 (best) BASIC16.63■□□□□ 0.25
DEPDC4Q8N2C3 AC096733.2-201ENST00000609937 1394 ntBASIC16.63■□□□□ 0.25
DEPDC4Q8N2C3 U2AF2-201ENST00000308924 1698 ntAPPRIS P3 TSL 1 (best) BASIC16.62■□□□□ 0.25
DEPDC4Q8N2C3 FAM184A-214ENST00000621231 4048 ntTSL 5 BASIC16.62■□□□□ 0.25
DEPDC4Q8N2C3 FCMR-201ENST00000367091 1950 ntAPPRIS P3 TSL 1 (best) BASIC16.62■□□□□ 0.25
DEPDC4Q8N2C3 PTPN5-202ENST00000396166 2299 ntTSL 2 BASIC16.62■□□□□ 0.25
DEPDC4Q8N2C3 HSPB6-201ENST00000004982 1457 ntAPPRIS P1 TSL 1 (best) BASIC16.62■□□□□ 0.25
DEPDC4Q8N2C3 NDUFA10-214ENST00000620965 1489 ntAPPRIS ALT1 TSL 5 BASIC16.62■□□□□ 0.25
DEPDC4Q8N2C3 TLE4-206ENST00000376552 3695 ntAPPRIS P1 TSL 1 (best) BASIC16.62■□□□□ 0.25
DEPDC4Q8N2C3 PSMD8-210ENST00000620216 1538 ntAPPRIS P1 TSL 1 (best) BASIC16.62■□□□□ 0.25
DEPDC4Q8N2C3 ING1-202ENST00000338450 1189 ntTSL 1 (best) BASIC16.62■□□□□ 0.25
DEPDC4Q8N2C3 HIST1H2APS4-201ENST00000362070 348 ntBASIC16.62■□□□□ 0.25
DEPDC4Q8N2C3 POLR2D-202ENST00000409698 806 ntTSL 2 BASIC16.62■□□□□ 0.25
DEPDC4Q8N2C3 AC113347.1-201ENST00000413321 391 ntBASIC16.62■□□□□ 0.25
DEPDC4Q8N2C3 CYB561D2-204ENST00000424512 1212 ntAPPRIS P1 TSL 5 BASIC16.62■□□□□ 0.25
DEPDC4Q8N2C3 TMPOP1-202ENST00000424642 1267 ntBASIC16.62■□□□□ 0.25
DEPDC4Q8N2C3 SLC25A1P2-201ENST00000430693 912 ntBASIC16.62■□□□□ 0.25
DEPDC4Q8N2C3 CCDC112-205ENST00000506442 2145 ntAPPRIS ALT2 TSL 2 BASIC16.62■□□□□ 0.25
DEPDC4Q8N2C3 AC008771.1-201ENST00000508000 1151 ntTSL 2 BASIC16.62■□□□□ 0.25
DEPDC4Q8N2C3 FAM86C2P-201ENST00000525180 435 ntTSL 4 BASIC16.62■□□□□ 0.25
DEPDC4Q8N2C3 ABHD14B-208ENST00000525795 980 ntAPPRIS P1 TSL 3 BASIC16.62■□□□□ 0.25
DEPDC4Q8N2C3 PRR29-205ENST00000579184 1052 ntAPPRIS ALT2 TSL 2 BASIC16.62■□□□□ 0.25
DEPDC4Q8N2C3 GPX4-207ENST00000589115 812 ntTSL 2 BASIC16.62■□□□□ 0.25
DEPDC4Q8N2C3 DEDD2-209ENST00000598727 1037 ntTSL 1 (best) BASIC16.62■□□□□ 0.25
DEPDC4Q8N2C3 ASRGL1-211ENST00000628829 1161 ntTSL 1 (best) BASIC16.62■□□□□ 0.25
DEPDC4Q8N2C3 SNAPC3-207ENST00000610884 2453 ntAPPRIS P1 TSL 1 (best) BASIC16.62■□□□□ 0.25
DEPDC4Q8N2C3 CDC42BPG-201ENST00000342711 5742 ntAPPRIS P1 TSL 1 (best) BASIC16.62■□□□□ 0.25
DEPDC4Q8N2C3 ACTB-201ENST00000331789 1917 ntAPPRIS P1 TSL 1 (best) BASIC16.62■□□□□ 0.25
DEPDC4Q8N2C3 HIBCH-201ENST00000359678 1939 ntAPPRIS P1 TSL 1 (best) BASIC16.62■□□□□ 0.25
DEPDC4Q8N2C3 ERBB2-205ENST00000578199 2526 ntTSL 1 (best) BASIC16.62■□□□□ 0.25
DEPDC4Q8N2C3 HECTD2-204ENST00000446394 4939 ntTSL 2 BASIC16.62■□□□□ 0.25
DEPDC4Q8N2C3 TSC22D3-203ENST00000372383 2266 ntTSL 2 BASIC16.62■□□□□ 0.25
DEPDC4Q8N2C3 PAX7-201ENST00000375375 2260 ntTSL 1 (best) BASIC16.62■□□□□ 0.25
DEPDC4Q8N2C3 CDC25B-202ENST00000340833 1978 ntAPPRIS ALT2 TSL 1 (best) BASIC16.62■□□□□ 0.25
DEPDC4Q8N2C3 PIEZO1-201ENST00000301015 8072 ntAPPRIS P1 TSL 1 (best) BASIC16.62■□□□□ 0.25
DEPDC4Q8N2C3 GPBAR1-204ENST00000522678 2003 ntAPPRIS P1 TSL 2 BASIC16.62■□□□□ 0.25
DEPDC4Q8N2C3 TNIP1-208ENST00000520931 2680 ntAPPRIS ALT2 TSL 1 (best) BASIC16.62■□□□□ 0.25
DEPDC4Q8N2C3 DAGLB-204ENST00000436575 2385 ntTSL 2 BASIC16.62■□□□□ 0.25
DEPDC4Q8N2C3 AKIP1-207ENST00000529876 1421 ntTSL 2 BASIC16.62■□□□□ 0.25
DEPDC4Q8N2C3 NRSN2-202ENST00000382291 2088 ntAPPRIS P1 TSL 2 BASIC16.61■□□□□ 0.25
DEPDC4Q8N2C3 SSFA2-201ENST00000320370 4965 ntAPPRIS P3 TSL 1 (best) BASIC16.61■□□□□ 0.25
DEPDC4Q8N2C3 COQ6-201ENST00000334571 2118 ntAPPRIS P1 TSL 1 (best) BASIC16.61■□□□□ 0.25
DEPDC4Q8N2C3 AP001094.4-201ENST00000579008 2176 ntBASIC16.61■□□□□ 0.25
DEPDC4Q8N2C3 NBL1-210ENST00000615215 2160 ntAPPRIS ALT2 TSL 1 (best) BASIC16.61■□□□□ 0.25
DEPDC4Q8N2C3 MUM1-216ENST00000627377 2235 ntAPPRIS ALT2 TSL 5 BASIC16.61■□□□□ 0.25
DEPDC4Q8N2C3 SLC25A39-202ENST00000377095 1565 ntAPPRIS ALT1 TSL 1 (best) BASIC16.61■□□□□ 0.25
DEPDC4Q8N2C3 SLC22A11-202ENST00000377581 1975 ntTSL 5 BASIC16.61■□□□□ 0.25
DEPDC4Q8N2C3 PACSIN2-205ENST00000407585 3080 ntTSL 1 (best) BASIC16.61■□□□□ 0.25
DEPDC4Q8N2C3 DGCR6-201ENST00000331444 1214 ntAPPRIS P1 TSL 1 (best) BASIC16.61■□□□□ 0.25
DEPDC4Q8N2C3 PMVK-201ENST00000368467 1280 ntAPPRIS P1 TSL 1 (best) BASIC16.61■□□□□ 0.25
DEPDC4Q8N2C3 ERICH4-201ENST00000378187 946 ntAPPRIS P1 TSL 5 BASIC16.61■□□□□ 0.25
DEPDC4Q8N2C3 MIR564-202ENST00000385049 94 ntBASIC16.61■□□□□ 0.25
DEPDC4Q8N2C3 MAP3K14-AS1-202ENST00000585351 893 ntTSL 1 (best) BASIC16.61■□□□□ 0.25
DEPDC4Q8N2C3 RAB11B-AS1-201ENST00000593581 1013 ntTSL 1 (best) BASIC16.61■□□□□ 0.25
DEPDC4Q8N2C3 AC008763.3-201ENST00000597959 777 ntAPPRIS P1 TSL 4 BASIC16.61■□□□□ 0.25
DEPDC4Q8N2C3 HOXB6-201ENST00000225648 1660 ntAPPRIS P1 TSL 1 (best) BASIC16.61■□□□□ 0.25
DEPDC4Q8N2C3 ILK-203ENST00000420936 1692 ntAPPRIS P1 TSL 1 (best) BASIC16.61■□□□□ 0.25
DEPDC4Q8N2C3 UVSSA-209ENST00000512728 1668 ntAPPRIS ALT2 TSL 1 (best) BASIC16.61■□□□□ 0.25
DEPDC4Q8N2C3 RNF170-205ENST00000526349 1338 ntTSL 1 (best) BASIC16.61■□□□□ 0.25
DEPDC4Q8N2C3 CDX1-202ENST00000616154 1343 ntTSL 1 (best) BASIC16.61■□□□□ 0.25
DEPDC4Q8N2C3 RBPJL-201ENST00000343694 2489 ntAPPRIS P3 TSL 1 (best) BASIC16.61■□□□□ 0.25
DEPDC4Q8N2C3 ANKMY1-202ENST00000361678 2499 ntTSL 1 (best) BASIC16.61■□□□□ 0.25
DEPDC4Q8N2C3 TBC1D2-202ENST00000375063 2100 ntTSL 1 (best) BASIC16.61■□□□□ 0.25
DEPDC4Q8N2C3 MLF2-202ENST00000435120 1379 ntAPPRIS P1 TSL 2 BASIC16.61■□□□□ 0.25
DEPDC4Q8N2C3 DNAJC8-201ENST00000263697 1759 ntAPPRIS P1 TSL 1 (best) BASIC16.61■□□□□ 0.25
DEPDC4Q8N2C3 MFSD2A-201ENST00000372809 2173 ntTSL 2 BASIC16.61■□□□□ 0.25
DEPDC4Q8N2C3 CDK19-202ENST00000368911 6246 ntAPPRIS P1 TSL 1 (best) BASIC16.61■□□□□ 0.25
DEPDC4Q8N2C3 HDAC10-222ENST00000626012 2607 ntTSL 5 BASIC16.61■□□□□ 0.25
DEPDC4Q8N2C3 ICA1L-201ENST00000358299 3457 ntAPPRIS P1 TSL 2 BASIC16.61■□□□□ 0.25
DEPDC4Q8N2C3 TREX2-201ENST00000330912 2262 ntAPPRIS P1 TSL 1 (best) BASIC16.61■□□□□ 0.25
DEPDC4Q8N2C3 OGFOD2-222ENST00000545317 1481 ntTSL 2 BASIC16.61■□□□□ 0.25
DEPDC4Q8N2C3 RBM17-201ENST00000379888 2755 ntAPPRIS P1 TSL 1 (best) BASIC16.6■□□□□ 0.25
DEPDC4Q8N2C3 ADCK5-201ENST00000308860 1949 ntAPPRIS P1 TSL 1 (best) BASIC16.6■□□□□ 0.25
DEPDC4Q8N2C3 SYT3-202ENST00000593901 2836 ntAPPRIS P1 TSL 1 (best) BASIC16.6■□□□□ 0.25
DEPDC4Q8N2C3 ZNF211-201ENST00000240731 2440 ntAPPRIS P4 TSL 2 BASIC16.6■□□□□ 0.25
DEPDC4Q8N2C3 MOB3A-201ENST00000357066 3391 ntAPPRIS P1 TSL 1 (best) BASIC16.6■□□□□ 0.25
DEPDC4Q8N2C3 SMOC1-201ENST00000361956 2040 ntAPPRIS ALT1 TSL 1 (best) BASIC16.6■□□□□ 0.25
DEPDC4Q8N2C3 TBXAS1-210ENST00000458722 2057 ntTSL 2 BASIC16.6■□□□□ 0.25
DEPDC4Q8N2C3 LINC00602-201ENST00000629776 2065 ntBASIC16.6■□□□□ 0.25
DEPDC4Q8N2C3 SIGIRR-201ENST00000332725 1639 ntAPPRIS P1 TSL 2 BASIC16.6■□□□□ 0.25
DEPDC4Q8N2C3 COL9A1-201ENST00000320755 3059 ntTSL 1 (best) BASIC16.6■□□□□ 0.25
DEPDC4Q8N2C3 FLOT2-202ENST00000394908 2618 ntAPPRIS P3 TSL 1 (best) BASIC16.6■□□□□ 0.25
DEPDC4Q8N2C3 NFATC4-215ENST00000554661 2631 ntAPPRIS ALT2 TSL 1 (best) BASIC16.6■□□□□ 0.25
DEPDC4Q8N2C3 SNAPC4-201ENST00000298532 5010 ntAPPRIS P1 TSL 1 (best) BASIC16.6■□□□□ 0.25
DEPDC4Q8N2C3 ENOPH1-202ENST00000505846 1689 ntTSL 1 (best) BASIC16.6■□□□□ 0.25
DEPDC4Q8N2C3 LTBP2-205ENST00000556690 5614 ntAPPRIS ALT2 TSL 5 BASIC16.6■□□□□ 0.25
DEPDC4Q8N2C3 PCGF6-202ENST00000369847 2230 ntAPPRIS P1 TSL 1 (best) BASIC16.6■□□□□ 0.25
DEPDC4Q8N2C3 ECE2-205ENST00000404464 3229 ntTSL 1 (best) BASIC16.6■□□□□ 0.25
DEPDC4Q8N2C3 BOLA3-202ENST00000327428 639 ntAPPRIS P1 TSL 1 (best) BASIC16.6■□□□□ 0.25
DEPDC4Q8N2C3 ICAM4-201ENST00000340992 1176 ntAPPRIS ALT2 TSL 1 (best) BASIC16.6■□□□□ 0.25
DEPDC4Q8N2C3 SLC25A3P1-201ENST00000443844 931 ntBASIC16.6■□□□□ 0.25
DEPDC4Q8N2C3 FDX2-206ENST00000492239 773 ntTSL 2 BASIC16.6■□□□□ 0.25
DEPDC4Q8N2C3 DUT-205ENST00000558813 769 ntTSL 2 BASIC16.6■□□□□ 0.25
DEPDC4Q8N2C3 WDR13-202ENST00000376729 5469 ntAPPRIS P1 TSL 5 BASIC16.6■□□□□ 0.25
DEPDC4Q8N2C3 FAM181B-201ENST00000329203 3924 ntAPPRIS P1 BASIC16.6■□□□□ 0.25
DEPDC4Q8N2C3 GSTM4-201ENST00000326729 1321 ntTSL 1 (best) BASIC16.6■□□□□ 0.25
DEPDC4Q8N2C3 CAB39-203ENST00000410084 1324 ntAPPRIS P1 TSL 1 (best) BASIC16.6■□□□□ 0.25
Retrieved 100 of 98,524 protein–RNA pairs in 23.7 ms