Protein–RNA interactions for Protein: Q8N1B4

VPS52, Vacuolar protein sorting-associated protein 52 homolog, humanhuman

Predictions only

Length 723 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
VPS52Q8N1B4 DNAJC28-203ENST00000402202 1480 ntAPPRIS P1 TSL 5 BASIC19.33■□□□□ 0.68
VPS52Q8N1B4 ANXA3-201ENST00000264908 1657 ntAPPRIS P1 TSL 1 (best) BASIC19.33■□□□□ 0.68
VPS52Q8N1B4 LRRC36-201ENST00000329956 2395 ntAPPRIS P1 TSL 1 (best) BASIC19.33■□□□□ 0.68
VPS52Q8N1B4 VGLL4-210ENST00000426568 1428 ntTSL 1 (best) BASIC19.33■□□□□ 0.68
VPS52Q8N1B4 AC090164.3-201ENST00000610780 2143 ntBASIC19.33■□□□□ 0.68
VPS52Q8N1B4 NAF1-202ENST00000422287 1604 ntAPPRIS ALT2 TSL 1 (best) BASIC19.33■□□□□ 0.68
VPS52Q8N1B4 IDS-202ENST00000370441 1399 ntTSL 1 (best) BASIC19.32■□□□□ 0.68
VPS52Q8N1B4 AC243591.1-201ENST00000452967 1364 ntBASIC19.32■□□□□ 0.68
VPS52Q8N1B4 NOP14-204ENST00000502735 2723 ntAPPRIS ALT2 TSL 5 BASIC19.32■□□□□ 0.68
VPS52Q8N1B4 PDE8A-202ENST00000339708 2663 ntAPPRIS ALT2 TSL 1 (best) BASIC19.32■□□□□ 0.68
VPS52Q8N1B4 CXorf58-201ENST00000379211 1752 ntAPPRIS P2 TSL 1 (best) BASIC19.32■□□□□ 0.68
VPS52Q8N1B4 NPEPL1-203ENST00000525817 1780 ntTSL 2 BASIC19.32■□□□□ 0.68
VPS52Q8N1B4 SRRM2-201ENST00000301740 9353 ntAPPRIS P1 TSL 1 (best) BASIC19.32■□□□□ 0.68
VPS52Q8N1B4 TLK2-203ENST00000346027 3449 ntAPPRIS P3 TSL 1 (best) BASIC19.32■□□□□ 0.68
VPS52Q8N1B4 MED16-201ENST00000269814 1199 ntTSL 5 BASIC19.32■□□□□ 0.68
VPS52Q8N1B4 KLHL7-201ENST00000322275 969 ntTSL 1 (best) BASIC19.32■□□□□ 0.68
VPS52Q8N1B4 MTCL1P1-201ENST00000446207 792 ntBASIC19.32■□□□□ 0.68
VPS52Q8N1B4 NCBP2-AS1-201ENST00000447775 562 ntTSL 5 BASIC19.32■□□□□ 0.68
VPS52Q8N1B4 LAT-205ENST00000454369 1262 ntAPPRIS ALT2 TSL 5 BASIC19.32■□□□□ 0.68
VPS52Q8N1B4 AC018712.1-201ENST00000455767 687 ntBASIC19.32■□□□□ 0.68
VPS52Q8N1B4 AC097372.2-201ENST00000510996 732 ntTSL 3 BASIC19.32■□□□□ 0.68
VPS52Q8N1B4 COPS7A-215ENST00000543155 2127 ntAPPRIS P1 TSL 1 (best) BASIC19.32■□□□□ 0.68
VPS52Q8N1B4 AC009533.2-201ENST00000543664 586 ntBASIC19.32■□□□□ 0.68
VPS52Q8N1B4 YPEL3-209ENST00000566595 796 ntAPPRIS P1 TSL 2 BASIC19.32■□□□□ 0.68
VPS52Q8N1B4 AC009154.2-201ENST00000621177 724 ntBASIC19.32■□□□□ 0.68
VPS52Q8N1B4 ARHGAP8-201ENST00000336963 1487 ntTSL 1 (best) BASIC19.32■□□□□ 0.68
VPS52Q8N1B4 LONP1-215ENST00000593119 2918 ntTSL 2 BASIC19.32■□□□□ 0.68
VPS52Q8N1B4 LTB4R2-202ENST00000528054 3092 ntBASIC19.32■□□□□ 0.68
VPS52Q8N1B4 OR6D1P-202ENST00000641007 5290 ntBASIC19.32■□□□□ 0.68
VPS52Q8N1B4 KANSL1L-203ENST00000418791 3562 ntTSL 1 (best) BASIC19.32■□□□□ 0.68
VPS52Q8N1B4 ARHGAP22-203ENST00000374172 2380 ntTSL 2 BASIC19.32■□□□□ 0.68
VPS52Q8N1B4 KLHL40-201ENST00000287777 2517 ntAPPRIS P1 TSL 1 (best) BASIC19.31■□□□□ 0.68
VPS52Q8N1B4 CTSB-202ENST00000353047 3875 ntAPPRIS P1 TSL 1 (best) BASIC19.31■□□□□ 0.68
VPS52Q8N1B4 CPEB2-207ENST00000507071 2103 ntAPPRIS ALT2 TSL 1 (best) BASIC19.31■□□□□ 0.68
VPS52Q8N1B4 ZBTB8A-201ENST00000316459 1943 ntTSL 1 (best) BASIC19.31■□□□□ 0.68
VPS52Q8N1B4 WDR90-215ENST00000549091 5589 ntAPPRIS ALT2 TSL 5 BASIC19.31■□□□□ 0.68
VPS52Q8N1B4 HR-201ENST00000312841 5351 ntTSL 5 BASIC19.31■□□□□ 0.68
VPS52Q8N1B4 FAM9A-202ENST00000543214 1544 ntAPPRIS P1 TSL 1 (best) BASIC19.31■□□□□ 0.68
VPS52Q8N1B4 MAN1B1-207ENST00000535144 2296 ntTSL 2 BASIC19.31■□□□□ 0.68
VPS52Q8N1B4 TSPAN32-201ENST00000182290 1318 ntAPPRIS P2 TSL 1 (best) BASIC19.31■□□□□ 0.68
VPS52Q8N1B4 TSPAN32-217ENST00000612299 1301 ntTSL 5 BASIC19.31■□□□□ 0.68
VPS52Q8N1B4 ZNF302-206ENST00000505242 2849 ntAPPRIS P3 TSL 1 (best) BASIC19.31■□□□□ 0.68
VPS52Q8N1B4 SEC61A2-201ENST00000298428 1893 ntAPPRIS P1 TSL 1 (best) BASIC19.31■□□□□ 0.68
VPS52Q8N1B4 RNF139-201ENST00000303545 2637 ntAPPRIS P1 TSL 1 (best) BASIC19.31■□□□□ 0.68
VPS52Q8N1B4 FADS1-204ENST00000433932 1690 ntTSL 2 BASIC19.31■□□□□ 0.68
VPS52Q8N1B4 ISLR2-210ENST00000565540 2780 ntAPPRIS P1 TSL 4 BASIC19.31■□□□□ 0.68
VPS52Q8N1B4 SP7-203ENST00000537210 1472 ntTSL 1 (best) BASIC19.31■□□□□ 0.68
VPS52Q8N1B4 IMP3-201ENST00000314852 2028 ntAPPRIS P1 TSL 2 BASIC19.31■□□□□ 0.68
VPS52Q8N1B4 UBE2I-207ENST00000406620 1842 ntAPPRIS P1 TSL 2 BASIC19.31■□□□□ 0.68
VPS52Q8N1B4 ODF3B-202ENST00000401779 869 ntTSL 1 (best) BASIC19.31■□□□□ 0.68
VPS52Q8N1B4 ODF3B-203ENST00000403326 643 ntTSL 3 BASIC19.31■□□□□ 0.68
VPS52Q8N1B4 RBM17P3-201ENST00000417687 1192 ntBASIC19.31■□□□□ 0.68
VPS52Q8N1B4 ODF3B-205ENST00000428989 762 ntAPPRIS P1 TSL 1 (best) BASIC19.31■□□□□ 0.68
VPS52Q8N1B4 MEG3-211ENST00000452514 461 ntTSL 3 BASIC19.31■□□□□ 0.68
VPS52Q8N1B4 ZNF655-218ENST00000454654 571 ntTSL 4 BASIC19.31■□□□□ 0.68
VPS52Q8N1B4 FGFR3P6-201ENST00000457012 610 ntBASIC19.31■□□□□ 0.68
VPS52Q8N1B4 C1orf109-203ENST00000464085 919 ntAPPRIS P1 TSL 2 BASIC19.31■□□□□ 0.68
VPS52Q8N1B4 NECTIN3-AS1-204ENST00000476301 568 ntTSL 4 BASIC19.31■□□□□ 0.68
VPS52Q8N1B4 AC073648.2-201ENST00000510116 352 ntBASIC19.31■□□□□ 0.68
VPS52Q8N1B4 MIEN1-205ENST00000577810 806 ntTSL 3 BASIC19.31■□□□□ 0.68
VPS52Q8N1B4 C19orf25-210ENST00000591027 574 ntTSL 4 BASIC19.31■□□□□ 0.68
VPS52Q8N1B4 GZMM-202ENST00000592501 941 ntTSL 3 BASIC19.31■□□□□ 0.68
VPS52Q8N1B4 GPX4-212ENST00000616066 924 ntAPPRIS ALT1 TSL 5 BASIC19.31■□□□□ 0.68
VPS52Q8N1B4 HOXA11-AS1_5.1-201ENST00000620211 203 ntBASIC19.31■□□□□ 0.68
VPS52Q8N1B4 ANXA8-202ENST00000583448 1971 ntTSL 1 (best) BASIC19.31■□□□□ 0.68
VPS52Q8N1B4 BAIAP2-203ENST00000416299 1442 ntTSL 2 BASIC19.31■□□□□ 0.68
VPS52Q8N1B4 CCNA1-202ENST00000440264 1758 ntAPPRIS P1 TSL 2 BASIC19.31■□□□□ 0.68
VPS52Q8N1B4 IRF7-207ENST00000525445 1588 ntTSL 5 BASIC19.31■□□□□ 0.68
VPS52Q8N1B4 LRRC25-201ENST00000339007 2415 ntAPPRIS P1 TSL 1 (best) BASIC19.31■□□□□ 0.68
VPS52Q8N1B4 LINC00602-201ENST00000629776 2065 ntBASIC19.31■□□□□ 0.68
VPS52Q8N1B4 ARRB1-201ENST00000360025 1895 ntAPPRIS P3 TSL 1 (best) BASIC19.31■□□□□ 0.68
VPS52Q8N1B4 PSTPIP1-203ENST00000558012 1896 ntAPPRIS P2 TSL 1 (best) BASIC19.31■□□□□ 0.68
VPS52Q8N1B4 PDLIM7-202ENST00000355841 1689 ntAPPRIS P4 TSL 1 (best) BASIC19.3■□□□□ 0.68
VPS52Q8N1B4 FOXO3-202ENST00000406360 7341 ntAPPRIS P1 TSL 1 (best) BASIC19.3■□□□□ 0.68
VPS52Q8N1B4 ALDH5A1-201ENST00000348925 2266 ntAPPRIS P4 TSL 1 (best) BASIC19.3■□□□□ 0.68
VPS52Q8N1B4 HERPUD2-202ENST00000396081 3057 ntAPPRIS P1 TSL 1 (best) BASIC19.3■□□□□ 0.68
VPS52Q8N1B4 NUMBL-202ENST00000540131 1931 ntAPPRIS ALT2 TSL 2 BASIC19.3■□□□□ 0.68
VPS52Q8N1B4 NUDT6-201ENST00000304430 1169 ntAPPRIS P1 TSL 1 (best) BASIC19.3■□□□□ 0.68
VPS52Q8N1B4 ZNF7-201ENST00000325217 592 ntTSL 4 BASIC19.3■□□□□ 0.68
VPS52Q8N1B4 MSRB1-202ENST00000399753 847 ntTSL 3 BASIC19.3■□□□□ 0.68
VPS52Q8N1B4 AC064807.1-202ENST00000423716 936 ntTSL 2 BASIC19.3■□□□□ 0.68
VPS52Q8N1B4 RPP21-221ENST00000428040 594 ntTSL 2 BASIC19.3■□□□□ 0.68
VPS52Q8N1B4 RPP21-224ENST00000442966 525 ntAPPRIS P1 TSL 1 (best) BASIC19.3■□□□□ 0.68
VPS52Q8N1B4 KRT18P58-201ENST00000527480 1120 ntBASIC19.3■□□□□ 0.68
VPS52Q8N1B4 SEC23A-206ENST00000553970 574 ntTSL 4 BASIC19.3■□□□□ 0.68
VPS52Q8N1B4 AC012615.5-201ENST00000592720 581 ntTSL 4 BASIC19.3■□□□□ 0.68
VPS52Q8N1B4 AC011530.1-201ENST00000593999 558 ntTSL 2 BASIC19.3■□□□□ 0.68
VPS52Q8N1B4 AL049840.3-201ENST00000602669 611 ntBASIC19.3■□□□□ 0.68
VPS52Q8N1B4 AP001269.4-201ENST00000609611 512 ntBASIC19.3■□□□□ 0.68
VPS52Q8N1B4 MSL1-206ENST00000579565 1401 ntAPPRIS P1 TSL 1 (best) BASIC19.3■□□□□ 0.68
VPS52Q8N1B4 MEGF9-201ENST00000373930 6298 ntAPPRIS P1 TSL 2 BASIC19.3■□□□□ 0.68
VPS52Q8N1B4 NAP1L5-201ENST00000323061 2321 ntAPPRIS P1 BASIC19.3■□□□□ 0.68
VPS52Q8N1B4 PPP1R18-201ENST00000274853 4599 ntAPPRIS P1 TSL 1 (best) BASIC19.3■□□□□ 0.68
VPS52Q8N1B4 PPP1R18-205ENST00000615527 4597 ntAPPRIS P1 TSL 1 (best) BASIC19.3■□□□□ 0.68
VPS52Q8N1B4 STAC3-201ENST00000332782 1656 ntAPPRIS P1 TSL 2 BASIC19.3■□□□□ 0.68
VPS52Q8N1B4 TMPRSS5-205ENST00000538955 1956 ntAPPRIS ALT2 TSL 1 (best) BASIC19.3■□□□□ 0.68
VPS52Q8N1B4 PDE6B-202ENST00000429163 2120 ntTSL 2 BASIC19.3■□□□□ 0.68
VPS52Q8N1B4 CDC73-201ENST00000367435 4969 ntAPPRIS P1 TSL 1 (best) BASIC19.3■□□□□ 0.68
VPS52Q8N1B4 VEGFA-206ENST00000372077 2834 ntTSL 1 (best) BASIC19.29■□□□□ 0.68
VPS52Q8N1B4 HOXC10-201ENST00000303460 1936 ntAPPRIS P1 TSL 1 (best) BASIC19.29■□□□□ 0.68
Retrieved 100 of 98,524 protein–RNA pairs in 33.1 ms