Protein–RNA interactions for Protein: Q5T4S7

UBR4, E3 ubiquitin-protein ligase UBR4, humanhuman

Predictions only

Length 5,183 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
UBR4Q5T4S7 SNCA-209ENST00000506244 570 ntAPPRIS P1 TSL 2 BASIC9.62□□□□□ -0.87
UBR4Q5T4S7 RPS3A-212ENST00000514682 985 ntTSL 5 BASIC9.62□□□□□ -0.87
UBR4Q5T4S7 RCN1-210ENST00000532942 1191 ntAPPRIS ALT2 TSL 2 BASIC9.62□□□□□ -0.87
UBR4Q5T4S7 FAM192A-218ENST00000567439 1086 ntAPPRIS P1 TSL 2 BASIC9.62□□□□□ -0.87
UBR4Q5T4S7 THOP1-202ENST00000395212 1877 ntTSL 2 BASIC9.62□□□□□ -0.87
UBR4Q5T4S7 RBFOX1-215ENST00000553186 2196 ntTSL 1 (best) BASIC9.62□□□□□ -0.87
UBR4Q5T4S7 KCNK7-204ENST00000394217 1372 ntTSL 1 (best) BASIC9.62□□□□□ -0.87
UBR4Q5T4S7 FMO5-208ENST00000578284 1784 ntTSL 5 BASIC9.62□□□□□ -0.87
UBR4Q5T4S7 PKD1L2-209ENST00000531391 1488 ntTSL 1 (best) BASIC9.62□□□□□ -0.87
UBR4Q5T4S7 DLX2-AS1-201ENST00000448117 950 ntTSL 5 BASIC9.62□□□□□ -0.87
UBR4Q5T4S7 AP002008.1-201ENST00000530283 1155 ntTSL 1 (best) BASIC9.62□□□□□ -0.87
UBR4Q5T4S7 AC040963.1-202ENST00000589729 644 ntTSL 5 BASIC9.62□□□□□ -0.87
UBR4Q5T4S7 AC008743.1-201ENST00000596350 813 ntTSL 4 BASIC9.62□□□□□ -0.87
UBR4Q5T4S7 RNA5-8SN1-201ENST00000610460 153 ntBASIC9.62□□□□□ -0.87
UBR4Q5T4S7 RNA5-8SN5-202ENST00000612463 153 ntBASIC9.62□□□□□ -0.87
UBR4Q5T4S7 RNA5-8SN4-201ENST00000613359 153 ntBASIC9.62□□□□□ -0.87
UBR4Q5T4S7 RNA5-8SN5-201ENST00000619471 153 ntBASIC9.62□□□□□ -0.87
UBR4Q5T4S7 ZNF789-201ENST00000331410 1654 ntAPPRIS P1 TSL 1 (best) BASIC9.62□□□□□ -0.87
UBR4Q5T4S7 FBXO15-201ENST00000419743 1708 ntAPPRIS P2 TSL 2 BASIC9.62□□□□□ -0.87
UBR4Q5T4S7 CRB3-203ENST00000598494 1443 ntAPPRIS ALT2 TSL 2 BASIC9.62□□□□□ -0.87
UBR4Q5T4S7 AL023806.1-201ENST00000603994 1649 ntBASIC9.62□□□□□ -0.87
UBR4Q5T4S7 IL11RA-201ENST00000318041 1728 ntAPPRIS P1 TSL 1 (best) BASIC9.62□□□□□ -0.87
UBR4Q5T4S7 DYRK1B-204ENST00000593685 2724 ntAPPRIS P3 TSL 5 BASIC9.62□□□□□ -0.87
UBR4Q5T4S7 FMC1-201ENST00000297534 1210 ntAPPRIS P1 TSL 1 (best) BASIC9.62□□□□□ -0.87
UBR4Q5T4S7 TMEM243-202ENST00000423734 601 ntTSL 2 BASIC9.62□□□□□ -0.87
UBR4Q5T4S7 AC008011.2-201ENST00000538113 792 ntTSL 3 BASIC9.62□□□□□ -0.87
UBR4Q5T4S7 ZNF790-AS1-203ENST00000588906 850 ntTSL 2 BASIC9.62□□□□□ -0.87
UBR4Q5T4S7 COL8A2-203ENST00000481785 2036 ntTSL 1 (best) BASIC9.62□□□□□ -0.87
UBR4Q5T4S7 TRH-202ENST00000507066 1580 ntAPPRIS ALT1 TSL 5 BASIC9.62□□□□□ -0.87
UBR4Q5T4S7 SKP2-208ENST00000546211 1589 ntTSL 5 BASIC9.62□□□□□ -0.87
UBR4Q5T4S7 ME3-202ENST00000393324 2240 ntAPPRIS P1 TSL 1 (best) BASIC9.62□□□□□ -0.87
UBR4Q5T4S7 SYT17-207ENST00000568115 1721 ntTSL 5 BASIC9.62□□□□□ -0.87
UBR4Q5T4S7 MAGIX-207ENST00000615915 1757 ntAPPRIS ALT2 TSL 2 BASIC9.62□□□□□ -0.87
UBR4Q5T4S7 NXT2-202ENST00000372103 1085 ntTSL 1 (best) BASIC9.62□□□□□ -0.87
UBR4Q5T4S7 BANF1-202ENST00000445560 946 ntAPPRIS P1 TSL 1 (best) BASIC9.62□□□□□ -0.87
UBR4Q5T4S7 AC006003.1-201ENST00000448541 613 ntTSL 4 BASIC9.62□□□□□ -0.87
UBR4Q5T4S7 SLC22A18-206ENST00000449793 1225 ntTSL 5 BASIC9.62□□□□□ -0.87
UBR4Q5T4S7 CROCCP4-201ENST00000457096 498 ntBASIC9.62□□□□□ -0.87
UBR4Q5T4S7 HOXB-AS4-202ENST00000480386 566 ntTSL 4 BASIC9.62□□□□□ -0.87
UBR4Q5T4S7 AC114737.3-201ENST00000636708 570 ntTSL 4 BASIC9.62□□□□□ -0.87
UBR4Q5T4S7 ACY3-201ENST00000255082 1300 ntAPPRIS P1 TSL 1 (best) BASIC9.62□□□□□ -0.87
UBR4Q5T4S7 NABP2-201ENST00000267023 1417 ntAPPRIS P1 TSL 1 (best) BASIC9.62□□□□□ -0.87
UBR4Q5T4S7 MTUS2-202ENST00000380808 1793 ntAPPRIS P3 TSL 1 (best) BASIC9.62□□□□□ -0.87
UBR4Q5T4S7 LY6K-201ENST00000292430 2671 ntAPPRIS P3 TSL 1 (best) BASIC9.61□□□□□ -0.87
UBR4Q5T4S7 SPRN-201ENST00000414069 3128 ntAPPRIS P1 TSL 1 (best) BASIC9.61□□□□□ -0.87
UBR4Q5T4S7 CMA1-201ENST00000206446 633 ntTSL 1 (best) BASIC9.61□□□□□ -0.87
UBR4Q5T4S7 ETFB-201ENST00000309244 900 ntAPPRIS P1 TSL 1 (best) BASIC9.61□□□□□ -0.87
UBR4Q5T4S7 ANK1-203ENST00000314214 1185 ntTSL 1 (best) BASIC9.61□□□□□ -0.87
UBR4Q5T4S7 S100A16-202ENST00000368704 1146 ntAPPRIS P1 TSL 2 BASIC9.61□□□□□ -0.87
UBR4Q5T4S7 JPT2-203ENST00000382711 894 ntTSL 4 BASIC9.61□□□□□ -0.87
UBR4Q5T4S7 DSCR3-202ENST00000398998 988 ntTSL 5 BASIC9.61□□□□□ -0.87
UBR4Q5T4S7 TMEM220-AS1-206ENST00000583343 876 ntTSL 3 BASIC9.61□□□□□ -0.87
UBR4Q5T4S7 AC105105.3-201ENST00000585470 646 ntTSL 5 BASIC9.61□□□□□ -0.87
UBR4Q5T4S7 AC087645.2-201ENST00000586321 799 ntTSL 3 BASIC9.61□□□□□ -0.87
UBR4Q5T4S7 R3HDML-201ENST00000217043 1377 ntAPPRIS P1 TSL 1 (best) BASIC9.61□□□□□ -0.87
UBR4Q5T4S7 ZC3HAV1L-201ENST00000275766 1753 ntAPPRIS P1 TSL 1 (best) BASIC9.61□□□□□ -0.87
UBR4Q5T4S7 C17orf67-201ENST00000397861 2013 ntAPPRIS P1 TSL 1 (best) BASIC9.61□□□□□ -0.87
UBR4Q5T4S7 ACD-201ENST00000219251 2052 ntAPPRIS P3 TSL 2 BASIC9.61□□□□□ -0.87
UBR4Q5T4S7 CBLN3-201ENST00000267406 2346 ntAPPRIS P1 TSL 1 (best) BASIC9.61□□□□□ -0.87
UBR4Q5T4S7 MCU-201ENST00000357157 2874 ntTSL 1 (best) BASIC9.61□□□□□ -0.87
UBR4Q5T4S7 FEM1AP4-201ENST00000443167 1987 ntBASIC9.61□□□□□ -0.87
UBR4Q5T4S7 ATPIF1-202ENST00000465645 1855 ntTSL 1 (best) BASIC9.61□□□□□ -0.87
UBR4Q5T4S7 SDC1-203ENST00000403076 1523 ntTSL 1 (best) BASIC9.61□□□□□ -0.87
UBR4Q5T4S7 PKIG-202ENST00000372886 1180 ntAPPRIS P1 TSL 2 BASIC9.61□□□□□ -0.87
UBR4Q5T4S7 NPM2-202ENST00000381530 925 ntTSL 1 (best) BASIC9.61□□□□□ -0.87
UBR4Q5T4S7 LRP5L-201ENST00000402785 1193 ntAPPRIS P2 TSL 1 (best) BASIC9.61□□□□□ -0.87
UBR4Q5T4S7 TSR1-204ENST00000576112 1290 ntTSL 5 BASIC9.61□□□□□ -0.87
UBR4Q5T4S7 CUEDC1-207ENST00000577840 875 ntTSL 5 BASIC9.61□□□□□ -0.87
UBR4Q5T4S7 AC005357.2-202ENST00000590507 1060 ntBASIC9.61□□□□□ -0.87
UBR4Q5T4S7 MAGIX-204ENST00000614074 778 ntTSL 1 (best) BASIC9.61□□□□□ -0.87
UBR4Q5T4S7 CEBPB-201ENST00000303004 1956 ntAPPRIS P1 BASIC9.61□□□□□ -0.87
UBR4Q5T4S7 FBXW4P1-201ENST00000426721 2239 ntBASIC9.61□□□□□ -0.87
UBR4Q5T4S7 CACNB2-206ENST00000377328 1233 ntTSL 1 (best) BASIC9.61□□□□□ -0.87
UBR4Q5T4S7 CD81-202ENST00000381036 880 ntTSL 3 BASIC9.61□□□□□ -0.87
UBR4Q5T4S7 IGHV3-35-201ENST00000390617 366 ntAPPRIS P1 BASIC9.61□□□□□ -0.87
UBR4Q5T4S7 TPM1-207ENST00000403994 1049 ntAPPRIS ALT1 TSL 1 (best) BASIC9.61□□□□□ -0.87
UBR4Q5T4S7 AL139158.2-202ENST00000428151 573 ntTSL 3 BASIC9.61□□□□□ -0.87
UBR4Q5T4S7 AGTRAP-206ENST00000452018 809 ntTSL 2 BASIC9.61□□□□□ -0.87
UBR4Q5T4S7 GALNT9-208ENST00000541995 1001 ntTSL 1 (best) BASIC9.61□□□□□ -0.87
UBR4Q5T4S7 SIGLEC7-205ENST00000600577 616 ntTSL 1 (best) BASIC9.61□□□□□ -0.87
UBR4Q5T4S7 AC004790.1-201ENST00000612686 536 ntBASIC9.61□□□□□ -0.87
UBR4Q5T4S7 AC145423.3-201ENST00000615987 467 ntBASIC9.61□□□□□ -0.87
UBR4Q5T4S7 ALDH7A1-215ENST00000553117 1935 ntTSL 2 BASIC9.61□□□□□ -0.87
UBR4Q5T4S7 FOXD4L3-201ENST00000342833 2039 ntAPPRIS P1 BASIC9.61□□□□□ -0.87
UBR4Q5T4S7 CHRNA3-202ENST00000348639 2030 ntTSL 1 (best) BASIC9.61□□□□□ -0.87
UBR4Q5T4S7 BEST4-201ENST00000372207 2047 ntAPPRIS P1 TSL 1 (best) BASIC9.61□□□□□ -0.87
UBR4Q5T4S7 PKM-215ENST00000565154 2004 ntAPPRIS ALT1 TSL 2 BASIC9.61□□□□□ -0.87
UBR4Q5T4S7 LINC02415-201ENST00000508505 1315 ntTSL 1 (best) BASIC9.61□□□□□ -0.87
UBR4Q5T4S7 CLDN5-201ENST00000403084 2357 ntBASIC9.61□□□□□ -0.87
UBR4Q5T4S7 LIMS3-203ENST00000480744 1197 ntAPPRIS P1 TSL 5 BASIC9.61□□□□□ -0.87
UBR4Q5T4S7 NEU3-202ENST00000526068 431 ntTSL 2 BASIC9.61□□□□□ -0.87
UBR4Q5T4S7 AKIP1-210ENST00000534147 1022 ntAPPRIS P3 TSL 1 (best) BASIC9.61□□□□□ -0.87
UBR4Q5T4S7 YEATS4-202ENST00000548020 1100 ntTSL 2 BASIC9.61□□□□□ -0.87
UBR4Q5T4S7 CMTM3-212ENST00000566121 572 ntTSL 3 BASIC9.61□□□□□ -0.87
UBR4Q5T4S7 AC012615.4-201ENST00000586694 607 ntTSL 4 BASIC9.61□□□□□ -0.87
UBR4Q5T4S7 ZNF528-AS1-202ENST00000596746 929 ntTSL 5 BASIC9.61□□□□□ -0.87
UBR4Q5T4S7 AP003392.6-201ENST00000607709 325 ntBASIC9.61□□□□□ -0.87
UBR4Q5T4S7 COQ4-205ENST00000609948 956 ntTSL 2 BASIC9.61□□□□□ -0.87
UBR4Q5T4S7 TRIM60-203ENST00000508504 1674 ntAPPRIS P1 TSL 1 (best) BASIC9.61□□□□□ -0.87
UBR4Q5T4S7 VGF-201ENST00000249330 2575 ntAPPRIS P1 TSL 1 (best) BASIC9.61□□□□□ -0.87
Retrieved 100 of 98,524 protein–RNA pairs in 28.5 ms