Protein–RNA interactions for Protein: Q4G0X9

CCDC40, Coiled-coil domain-containing protein 40, humanhuman

Predictions only

Length 1,142 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC40Q4G0X9 RPARP-AS1-206ENST00000596366 631 ntTSL 3 BASIC19.64■□□□□ 0.73
CCDC40Q4G0X9 SGCB-201ENST00000381431 4431 ntAPPRIS P1 TSL 1 (best) BASIC19.64■□□□□ 0.73
CCDC40Q4G0X9 SAMD11-214ENST00000618323 2159 ntTSL 5 BASIC19.64■□□□□ 0.73
CCDC40Q4G0X9 MXRA8-202ENST00000342753 2231 ntTSL 1 (best) BASIC19.64■□□□□ 0.73
CCDC40Q4G0X9 TEX264-204ENST00000415259 2290 ntAPPRIS P3 TSL 5 BASIC19.64■□□□□ 0.73
CCDC40Q4G0X9 CCNI2-201ENST00000378731 2355 ntAPPRIS P3 TSL 1 (best) BASIC19.64■□□□□ 0.73
CCDC40Q4G0X9 YY1AP1-206ENST00000359205 2690 ntAPPRIS ALT2 TSL 1 (best) BASIC19.64■□□□□ 0.73
CCDC40Q4G0X9 NOL4L-211ENST00000621426 6577 ntAPPRIS P2 TSL 5 BASIC19.64■□□□□ 0.73
CCDC40Q4G0X9 SPTBN4-212ENST00000598249 8070 ntAPPRIS P2 TSL 1 (best) BASIC19.64■□□□□ 0.73
CCDC40Q4G0X9 XKR4-203ENST00000622811 3907 ntAPPRIS P1 TSL 5 BASIC19.63■□□□□ 0.73
CCDC40Q4G0X9 FAM69C-201ENST00000343998 3671 ntAPPRIS P1 TSL 5 BASIC19.63■□□□□ 0.73
CCDC40Q4G0X9 ECE2-205ENST00000404464 3229 ntTSL 1 (best) BASIC19.63■□□□□ 0.73
CCDC40Q4G0X9 LANCL3-201ENST00000378619 3063 ntAPPRIS P1 TSL 1 (best) BASIC19.63■□□□□ 0.73
CCDC40Q4G0X9 RIN1-201ENST00000311320 2693 ntAPPRIS P1 TSL 1 (best) BASIC19.63■□□□□ 0.73
CCDC40Q4G0X9 SCNN1D-201ENST00000325425 2679 ntAPPRIS ALT2 TSL 1 (best) BASIC19.63■□□□□ 0.73
CCDC40Q4G0X9 LRCH3-201ENST00000334859 2258 ntTSL 1 (best) BASIC19.63■□□□□ 0.73
CCDC40Q4G0X9 ERMARD-210ENST00000588451 2146 ntTSL 5 BASIC19.63■□□□□ 0.73
CCDC40Q4G0X9 MAGEA3-203ENST00000598245 1762 ntAPPRIS P1 TSL 2 BASIC19.63■□□□□ 0.73
CCDC40Q4G0X9 MAGEA6-204ENST00000616035 1762 ntAPPRIS P1 TSL 5 BASIC19.63■□□□□ 0.73
CCDC40Q4G0X9 AL079301.1-201ENST00000424580 1633 ntTSL 2 BASIC19.63■□□□□ 0.73
CCDC40Q4G0X9 PLCB2-201ENST00000260402 4616 ntAPPRIS P3 TSL 2 BASIC19.63■□□□□ 0.73
CCDC40Q4G0X9 APBB1IP-201ENST00000356785 1513 ntTSL 1 (best) BASIC19.63■□□□□ 0.73
CCDC40Q4G0X9 WNT8A-204ENST00000506684 1543 ntTSL 1 (best) BASIC19.63■□□□□ 0.73
CCDC40Q4G0X9 RPL3-201ENST00000216146 1442 ntAPPRIS P1 TSL 1 (best) BASIC19.63■□□□□ 0.73
CCDC40Q4G0X9 CRADD-202ENST00000542893 1403 ntAPPRIS P1 TSL 1 (best) BASIC19.63■□□□□ 0.73
CCDC40Q4G0X9 GGPS1-206ENST00000488594 1396 ntAPPRIS P1 TSL 1 (best) BASIC19.63■□□□□ 0.73
CCDC40Q4G0X9 DGUOK-201ENST00000264093 1144 ntAPPRIS P1 TSL 1 (best) BASIC19.63■□□□□ 0.73
CCDC40Q4G0X9 PLPP2-201ENST00000269812 1228 ntTSL 3 BASIC19.63■□□□□ 0.73
CCDC40Q4G0X9 ICAM4-201ENST00000340992 1176 ntAPPRIS ALT2 TSL 1 (best) BASIC19.63■□□□□ 0.73
CCDC40Q4G0X9 FGF8-202ENST00000344255 707 ntTSL 1 (best) BASIC19.63■□□□□ 0.73
CCDC40Q4G0X9 DGUOK-202ENST00000348222 880 ntTSL 2 BASIC19.63■□□□□ 0.73
CCDC40Q4G0X9 LEF1-AS1-201ENST00000436413 1045 ntTSL 1 (best) BASIC19.63■□□□□ 0.73
CCDC40Q4G0X9 KRT18P65-201ENST00000439811 1286 ntBASIC19.63■□□□□ 0.73
CCDC40Q4G0X9 AC026471.3-201ENST00000565137 578 ntTSL 2 BASIC19.63■□□□□ 0.73
CCDC40Q4G0X9 LINC01023-201ENST00000606054 436 ntBASIC19.63■□□□□ 0.73
CCDC40Q4G0X9 SLF2-205ENST00000609386 891 ntAPPRIS ALT2 BASIC19.63■□□□□ 0.73
CCDC40Q4G0X9 AC004263.2-201ENST00000617183 678 ntBASIC19.63■□□□□ 0.73
CCDC40Q4G0X9 DGUOK-208ENST00000629438 1029 ntTSL 1 (best) BASIC19.63■□□□□ 0.73
CCDC40Q4G0X9 HPGD-213ENST00000541923 2920 ntTSL 2 BASIC19.63■□□□□ 0.73
CCDC40Q4G0X9 TMC6-202ENST00000322914 2786 ntAPPRIS P1 TSL 1 (best) BASIC19.63■□□□□ 0.73
CCDC40Q4G0X9 SLC1A4-201ENST00000234256 4561 ntAPPRIS P1 TSL 1 (best) BASIC19.63■□□□□ 0.73
CCDC40Q4G0X9 DKK3-201ENST00000326932 2636 ntAPPRIS P1 TSL 1 (best) BASIC19.63■□□□□ 0.73
CCDC40Q4G0X9 ZNF211-211ENST00000541801 2629 ntAPPRIS ALT2 TSL 3 BASIC19.63■□□□□ 0.73
CCDC40Q4G0X9 XRCC3-201ENST00000352127 2563 ntAPPRIS P1 TSL 1 (best) BASIC19.63■□□□□ 0.73
CCDC40Q4G0X9 ARHGAP22-206ENST00000435790 2595 ntAPPRIS ALT2 TSL 2 BASIC19.63■□□□□ 0.73
CCDC40Q4G0X9 MOGS-205ENST00000452063 2568 ntAPPRIS ALT2 TSL 1 (best) BASIC19.63■□□□□ 0.73
CCDC40Q4G0X9 CTSB-204ENST00000453527 2011 ntAPPRIS P1 TSL 2 BASIC19.63■□□□□ 0.73
CCDC40Q4G0X9 RASL10B-201ENST00000603017 3205 ntAPPRIS P1 TSL 1 (best) BASIC19.63■□□□□ 0.73
CCDC40Q4G0X9 FAM157B-201ENST00000446912 1795 ntTSL 2 BASIC19.62■□□□□ 0.73
CCDC40Q4G0X9 PSRC1-204ENST00000369909 1742 ntAPPRIS P3 TSL 1 (best) BASIC19.62■□□□□ 0.73
CCDC40Q4G0X9 PTP4A1-201ENST00000370651 5088 ntAPPRIS P1 TSL 1 (best) BASIC19.62■□□□□ 0.73
CCDC40Q4G0X9 FBXO33-201ENST00000298097 3853 ntAPPRIS P1 TSL 1 (best) BASIC19.62■□□□□ 0.73
CCDC40Q4G0X9 SIN3A-203ENST00000394949 4930 ntAPPRIS P1 TSL 1 (best) BASIC19.62■□□□□ 0.73
CCDC40Q4G0X9 SIGIRR-201ENST00000332725 1639 ntAPPRIS P1 TSL 2 BASIC19.62■□□□□ 0.73
CCDC40Q4G0X9 DTX2-206ENST00000430490 2623 ntAPPRIS P3 TSL 1 (best) BASIC19.62■□□□□ 0.73
CCDC40Q4G0X9 AC117500.2-201ENST00000508145 1561 ntTSL 1 (best) BASIC19.62■□□□□ 0.73
CCDC40Q4G0X9 DHX33-201ENST00000225296 5618 ntAPPRIS P1 TSL 1 (best) BASIC19.62■□□□□ 0.73
CCDC40Q4G0X9 KIF25-AS1-201ENST00000414364 1420 ntTSL 2 BASIC19.62■□□□□ 0.73
CCDC40Q4G0X9 FRMD4A-203ENST00000357447 6821 ntAPPRIS P2 TSL 1 (best) BASIC19.62■□□□□ 0.73
CCDC40Q4G0X9 MARCH1-203ENST00000503008 5877 ntAPPRIS P1 TSL 1 (best) BASIC19.62■□□□□ 0.73
CCDC40Q4G0X9 HEG1-201ENST00000311127 9156 ntAPPRIS P1 TSL 5 BASIC19.62■□□□□ 0.73
CCDC40Q4G0X9 AL355312.1-201ENST00000407115 2176 ntBASIC19.62■□□□□ 0.73
CCDC40Q4G0X9 POU4F3-201ENST00000230732 1182 ntAPPRIS P1 TSL 1 (best) BASIC19.62■□□□□ 0.73
CCDC40Q4G0X9 COPE-201ENST00000262812 1141 ntAPPRIS P1 TSL 1 (best) BASIC19.62■□□□□ 0.73
CCDC40Q4G0X9 TMEM190-201ENST00000291934 593 ntAPPRIS P1 TSL 1 (best) BASIC19.62■□□□□ 0.73
CCDC40Q4G0X9 LCE3C-201ENST00000333881 425 ntAPPRIS P1 BASIC19.62■□□□□ 0.73
CCDC40Q4G0X9 COPE-203ENST00000351079 907 ntTSL 2 BASIC19.62■□□□□ 0.73
CCDC40Q4G0X9 H2AFB2-201ENST00000354514 348 ntAPPRIS P1 BASIC19.62■□□□□ 0.73
CCDC40Q4G0X9 CDC26-201ENST00000374206 872 ntAPPRIS P1 TSL 1 (best) BASIC19.62■□□□□ 0.73
CCDC40Q4G0X9 TBC1D7-205ENST00000379307 1084 ntTSL 1 (best) BASIC19.62■□□□□ 0.73
CCDC40Q4G0X9 RNF152P1-201ENST00000397754 604 ntBASIC19.62■□□□□ 0.73
CCDC40Q4G0X9 YPEL3-201ENST00000398838 935 ntAPPRIS P1 TSL 1 (best) BASIC19.62■□□□□ 0.73
CCDC40Q4G0X9 SMYD3-204ENST00000403792 1209 ntTSL 1 (best) BASIC19.62■□□□□ 0.73
CCDC40Q4G0X9 AC012618.3-202ENST00000440004 472 ntTSL 4 BASIC19.62■□□□□ 0.73
CCDC40Q4G0X9 CDKN2AIPNL-202ENST00000458198 1223 ntAPPRIS P1 TSL 1 (best) BASIC19.62■□□□□ 0.73
CCDC40Q4G0X9 AL359075.1-203ENST00000462729 1002 ntBASIC19.62■□□□□ 0.73
CCDC40Q4G0X9 RARRES2-205ENST00000482669 563 ntAPPRIS P1 TSL 1 (best) BASIC19.62■□□□□ 0.73
CCDC40Q4G0X9 SDHA-213ENST00000510361 2148 ntTSL 2 BASIC19.62■□□□□ 0.73
CCDC40Q4G0X9 AC025259.3-201ENST00000564531 542 ntTSL 3 BASIC19.62■□□□□ 0.73
CCDC40Q4G0X9 PAQR4-204ENST00000574988 869 ntTSL 2 BASIC19.62■□□□□ 0.73
CCDC40Q4G0X9 MED9-202ENST00000580462 565 ntTSL 1 (best) BASIC19.62■□□□□ 0.73
CCDC40Q4G0X9 AC116407.2-201ENST00000613639 860 ntBASIC19.62■□□□□ 0.73
CCDC40Q4G0X9 MARK4-210ENST00000620044 2105 ntTSL 5 BASIC19.62■□□□□ 0.73
CCDC40Q4G0X9 CDK16-223ENST00000622098 2968 ntTSL 2 BASIC19.62■□□□□ 0.73
CCDC40Q4G0X9 AC064853.5-201ENST00000641976 258 ntAPPRIS P1 BASIC19.62■□□□□ 0.73
CCDC40Q4G0X9 MAEA-219ENST00000514708 1945 ntTSL 2 BASIC19.62■□□□□ 0.73
CCDC40Q4G0X9 AC008969.1-203ENST00000313957 1897 ntTSL 2 BASIC19.62■□□□□ 0.73
CCDC40Q4G0X9 ZNF853-201ENST00000457543 3857 ntAPPRIS P1 TSL 3 BASIC19.62■□□□□ 0.73
CCDC40Q4G0X9 PYCR1-217ENST00000629768 1740 ntTSL 5 BASIC19.62■□□□□ 0.73
CCDC40Q4G0X9 AXIN1-201ENST00000262320 3643 ntAPPRIS P4 TSL 1 (best) BASIC19.62■□□□□ 0.73
CCDC40Q4G0X9 CEP120-201ENST00000306467 4900 ntAPPRIS P1 TSL 5 BASIC19.62■□□□□ 0.73
CCDC40Q4G0X9 FAM13C-204ENST00000468840 2110 ntAPPRIS ALT2 TSL 2 BASIC19.61■□□□□ 0.73
CCDC40Q4G0X9 AC139713.2-201ENST00000641328 2723 ntBASIC19.61■□□□□ 0.73
CCDC40Q4G0X9 ULK3-201ENST00000440863 2623 ntAPPRIS P3 TSL 2 BASIC19.61■□□□□ 0.73
CCDC40Q4G0X9 SERPINB6-208ENST00000616722 2047 ntTSL 2 BASIC19.61■□□□□ 0.73
CCDC40Q4G0X9 SNX14-210ENST00000505648 3193 ntTSL 2 BASIC19.61■□□□□ 0.73
CCDC40Q4G0X9 EWSR1-202ENST00000332035 1989 ntAPPRIS ALT2 TSL 2 BASIC19.61■□□□□ 0.73
CCDC40Q4G0X9 AGPAT2-201ENST00000371694 1391 ntTSL 1 (best) BASIC19.61■□□□□ 0.73
CCDC40Q4G0X9 CSK-202ENST00000439220 1900 ntAPPRIS P1 TSL 2 BASIC19.61■□□□□ 0.73
CCDC40Q4G0X9 AK4P3-201ENST00000418260 669 ntBASIC19.61■□□□□ 0.73
Retrieved 100 of 98,524 protein–RNA pairs in 68.3 ms