Protein–RNA interactions for Protein: Q2M3G4

SHROOM1, Protein Shroom1, humanhuman

Predicted RBP Predictions only

Length 852 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SHROOM1Q2M3G4 AC022898.2-201ENST00000616822 1312 ntBASIC20.71■□□□□ 0.91
SHROOM1Q2M3G4 MGAT5B-201ENST00000301618 4486 ntAPPRIS P3 TSL 5 BASIC20.71■□□□□ 0.91
SHROOM1Q2M3G4 AC142086.1-202ENST00000398669 1839 ntTSL 2 BASIC20.71■□□□□ 0.91
SHROOM1Q2M3G4 BAIAP2L2-201ENST00000332536 2065 ntAPPRIS ALT2 TSL 5 BASIC20.71■□□□□ 0.91
SHROOM1Q2M3G4 LAMC3-202ENST00000361069 6133 ntAPPRIS P1 TSL 2 BASIC20.71■□□□□ 0.91
SHROOM1Q2M3G4 TNFRSF8-202ENST00000413146 2363 ntTSL 1 (best) BASIC20.71■□□□□ 0.91
SHROOM1Q2M3G4 FAM234A-202ENST00000301679 1936 ntTSL 2 BASIC20.7■□□□□ 0.91
SHROOM1Q2M3G4 PLEKHG4-201ENST00000360461 6782 ntAPPRIS P3 TSL 2 BASIC20.7■□□□□ 0.9
SHROOM1Q2M3G4 CTSD-212ENST00000637815 2003 ntAPPRIS ALT2 TSL 5 BASIC20.7■□□□□ 0.9
SHROOM1Q2M3G4 PDLIM3-201ENST00000284767 2589 ntTSL 5 BASIC20.7■□□□□ 0.9
SHROOM1Q2M3G4 EIPR1-201ENST00000382125 1766 ntAPPRIS P1 TSL 1 (best) BASIC20.7■□□□□ 0.9
SHROOM1Q2M3G4 PROK2-202ENST00000353065 1549 ntAPPRIS P1 TSL 1 (best) BASIC20.7■□□□□ 0.9
SHROOM1Q2M3G4 P2RY6-204ENST00000393592 1515 ntAPPRIS P1 TSL 1 (best) BASIC20.7■□□□□ 0.9
SHROOM1Q2M3G4 FUT8-AS1-201ENST00000621019 1521 ntBASIC20.7■□□□□ 0.9
SHROOM1Q2M3G4 RPS9-203ENST00000391752 772 ntAPPRIS P1 TSL 2 BASIC20.7■□□□□ 0.9
SHROOM1Q2M3G4 AC023274.1-201ENST00000418278 595 ntBASIC20.7■□□□□ 0.9
SHROOM1Q2M3G4 PLA2G12A-202ENST00000502283 1189 ntAPPRIS ALT2 TSL 1 (best) BASIC20.7■□□□□ 0.9
SHROOM1Q2M3G4 AC243773.2-203ENST00000612281 640 ntTSL 3 BASIC20.7■□□□□ 0.9
SHROOM1Q2M3G4 GCGR-202ENST00000570996 1872 ntAPPRIS ALT2 TSL 2 BASIC20.7■□□□□ 0.9
SHROOM1Q2M3G4 WT1-205ENST00000452863 2768 ntAPPRIS ALT2 TSL 1 (best) BASIC20.7■□□□□ 0.9
SHROOM1Q2M3G4 NR2F2-201ENST00000394166 5275 ntAPPRIS P1 TSL 1 (best) BASIC20.7■□□□□ 0.9
SHROOM1Q2M3G4 NCKAP1-201ENST00000360982 4989 ntTSL 1 (best) BASIC20.7■□□□□ 0.9
SHROOM1Q2M3G4 TREX2-201ENST00000330912 2262 ntAPPRIS P1 TSL 1 (best) BASIC20.7■□□□□ 0.9
SHROOM1Q2M3G4 ASIC3-201ENST00000297512 1718 ntTSL 1 (best) BASIC20.7■□□□□ 0.9
SHROOM1Q2M3G4 MSI2-203ENST00000416426 1714 ntTSL 2 BASIC20.7■□□□□ 0.9
SHROOM1Q2M3G4 AHRR-204ENST00000506456 2350 ntTSL 2 BASIC20.7■□□□□ 0.9
SHROOM1Q2M3G4 SBK1-201ENST00000341901 4992 ntAPPRIS P1 TSL 1 (best) BASIC20.69■□□□□ 0.9
SHROOM1Q2M3G4 TPRA1-204ENST00000450633 1865 ntAPPRIS P1 TSL 1 (best) BASIC20.69■□□□□ 0.9
SHROOM1Q2M3G4 KRT81-201ENST00000327741 1929 ntAPPRIS P2 TSL 1 (best) BASIC20.69■□□□□ 0.9
SHROOM1Q2M3G4 BAZ1B-202ENST00000404251 5428 ntAPPRIS P1 TSL 2 BASIC20.69■□□□□ 0.9
SHROOM1Q2M3G4 PNLDC1-207ENST00000610273 1940 ntTSL 1 (best) BASIC20.69■□□□□ 0.9
SHROOM1Q2M3G4 FNBP1-201ENST00000355681 1977 ntTSL 2 BASIC20.69■□□□□ 0.9
SHROOM1Q2M3G4 PF4-201ENST00000296029 604 ntAPPRIS P1 TSL 1 (best) BASIC20.69■□□□□ 0.9
SHROOM1Q2M3G4 SIGLEC8-202ENST00000340550 1293 ntTSL 1 (best) BASIC20.69■□□□□ 0.9
SHROOM1Q2M3G4 OPN1LW-201ENST00000369951 1261 ntAPPRIS P1 TSL 1 (best) BASIC20.69■□□□□ 0.9
SHROOM1Q2M3G4 IMP4-203ENST00000409935 958 ntTSL 5 BASIC20.69■□□□□ 0.9
SHROOM1Q2M3G4 FIS1-203ENST00000442303 631 ntTSL 3 BASIC20.69■□□□□ 0.9
SHROOM1Q2M3G4 PRYP5-201ENST00000451909 266 ntBASIC20.69■□□□□ 0.9
SHROOM1Q2M3G4 HS6ST1P1-201ENST00000481504 1234 ntBASIC20.69■□□□□ 0.9
SHROOM1Q2M3G4 AC109462.3-201ENST00000573934 613 ntBASIC20.69■□□□□ 0.9
SHROOM1Q2M3G4 TWSG1-202ENST00000581641 1119 ntTSL 2 BASIC20.69■□□□□ 0.9
SHROOM1Q2M3G4 CAND2-206ENST00000626378 333 ntTSL 5 BASIC20.69■□□□□ 0.9
SHROOM1Q2M3G4 DLGAP4-201ENST00000339266 5016 ntAPPRIS ALT2 TSL 5 BASIC20.69■□□□□ 0.9
SHROOM1Q2M3G4 AP001626.1-201ENST00000424890 2854 ntTSL 1 (best) BASIC20.69■□□□□ 0.9
SHROOM1Q2M3G4 TOM1L2-207ENST00000535933 1748 ntTSL 2 BASIC20.69■□□□□ 0.9
SHROOM1Q2M3G4 DICER1-AS1-204ENST00000554631 1709 ntTSL 2 BASIC20.69■□□□□ 0.9
SHROOM1Q2M3G4 SYCE1-203ENST00000368517 1377 ntAPPRIS P3 TSL 5 BASIC20.69■□□□□ 0.9
SHROOM1Q2M3G4 HARS-201ENST00000307633 1780 ntTSL 2 BASIC20.69■□□□□ 0.9
SHROOM1Q2M3G4 PUF60-201ENST00000313352 1804 ntAPPRIS ALT1 TSL 1 (best) BASIC20.69■□□□□ 0.9
SHROOM1Q2M3G4 NKIRAS1-207ENST00000437230 1898 ntAPPRIS ALT1 TSL 5 BASIC20.69■□□□□ 0.9
SHROOM1Q2M3G4 FGFR3-210ENST00000613647 4438 ntTSL 5 BASIC20.69■□□□□ 0.9
SHROOM1Q2M3G4 TRIP6-201ENST00000200457 1942 ntAPPRIS P1 TSL 1 (best) BASIC20.68■□□□□ 0.9
SHROOM1Q2M3G4 CLDN15-208ENST00000611078 1509 ntTSL 5 BASIC20.68■□□□□ 0.9
SHROOM1Q2M3G4 HARBI1-201ENST00000326737 1967 ntAPPRIS P1 TSL 1 (best) BASIC20.68■□□□□ 0.9
SHROOM1Q2M3G4 BCS1L-202ENST00000392109 1583 ntAPPRIS P1 TSL 1 (best) BASIC20.68■□□□□ 0.9
SHROOM1Q2M3G4 BCS1L-204ENST00000392111 1584 ntAPPRIS P1 TSL 1 (best) BASIC20.68■□□□□ 0.9
SHROOM1Q2M3G4 NRSN2-202ENST00000382291 2088 ntAPPRIS P1 TSL 2 BASIC20.68■□□□□ 0.9
SHROOM1Q2M3G4 AC055811.2-201ENST00000427497 1693 ntAPPRIS P1 TSL 1 (best) BASIC20.68■□□□□ 0.9
SHROOM1Q2M3G4 HSPB8-201ENST00000281938 2152 ntAPPRIS P1 TSL 1 (best) BASIC20.68■□□□□ 0.9
SHROOM1Q2M3G4 LINC00683-201ENST00000578803 2221 ntTSL 2 BASIC20.68■□□□□ 0.9
SHROOM1Q2M3G4 MYEOV-201ENST00000308946 2287 ntAPPRIS P3 TSL 1 (best) BASIC20.68■□□□□ 0.9
SHROOM1Q2M3G4 FCN2-201ENST00000291744 1057 ntAPPRIS P2 TSL 1 (best) BASIC20.68■□□□□ 0.9
SHROOM1Q2M3G4 GUCA2A-201ENST00000357001 569 ntAPPRIS P1 TSL 1 (best) BASIC20.68■□□□□ 0.9
SHROOM1Q2M3G4 PSMA7-201ENST00000370858 925 ntTSL 2 BASIC20.68■□□□□ 0.9
SHROOM1Q2M3G4 TEX30-206ENST00000376032 1165 ntAPPRIS P1 TSL 1 (best) BASIC20.68■□□□□ 0.9
SHROOM1Q2M3G4 AC005104.2-201ENST00000427818 678 ntBASIC20.68■□□□□ 0.9
SHROOM1Q2M3G4 AL133375.1-201ENST00000500590 980 ntTSL 5 BASIC20.68■□□□□ 0.9
SHROOM1Q2M3G4 AHSA1-208ENST00000555517 832 ntTSL 2 BASIC20.68■□□□□ 0.9
SHROOM1Q2M3G4 HAGH-208ENST00000566709 1291 ntTSL 5 BASIC20.68■□□□□ 0.9
SHROOM1Q2M3G4 SMIM22-210ENST00000615471 928 ntAPPRIS ALT2 TSL 3 BASIC20.68■□□□□ 0.9
SHROOM1Q2M3G4 NRXN1-202ENST00000342183 3315 ntTSL 1 (best) BASIC20.68■□□□□ 0.9
SHROOM1Q2M3G4 MADD-208ENST00000405573 1823 ntTSL 5 BASIC20.68■□□□□ 0.9
SHROOM1Q2M3G4 MAFF-207ENST00000538999 2365 ntTSL 2 BASIC20.68■□□□□ 0.9
SHROOM1Q2M3G4 ATP6AP2-214ENST00000636287 1904 ntAPPRIS ALT2 TSL 5 BASIC20.68■□□□□ 0.9
SHROOM1Q2M3G4 TMEM179-201ENST00000341595 2513 ntTSL 1 (best) BASIC20.68■□□□□ 0.9
SHROOM1Q2M3G4 AC120049.1-201ENST00000592638 2065 ntTSL 1 (best) BASIC20.68■□□□□ 0.9
SHROOM1Q2M3G4 CDH24-205ENST00000554034 2759 ntAPPRIS P1 TSL 1 (best) BASIC20.68■□□□□ 0.9
SHROOM1Q2M3G4 AC117500.2-201ENST00000508145 1561 ntTSL 1 (best) BASIC20.68■□□□□ 0.9
SHROOM1Q2M3G4 ANHX-202ENST00000545940 3452 ntAPPRIS P1 TSL 5 BASIC20.68■□□□□ 0.9
SHROOM1Q2M3G4 SLC12A9-215ENST00000540482 2269 ntTSL 2 BASIC20.67■□□□□ 0.9
SHROOM1Q2M3G4 KRT15-203ENST00000393976 2394 ntAPPRIS P1 TSL 5 BASIC20.67■□□□□ 0.9
SHROOM1Q2M3G4 ARHGAP5-203ENST00000396582 5786 ntTSL 1 (best) BASIC20.67■□□□□ 0.9
SHROOM1Q2M3G4 LPAR3-201ENST00000370611 1720 ntAPPRIS P1 TSL 1 (best) BASIC20.67■□□□□ 0.9
SHROOM1Q2M3G4 MRI1-201ENST00000040663 1735 ntAPPRIS P1 TSL 1 (best) BASIC20.67■□□□□ 0.9
SHROOM1Q2M3G4 NDUFS7-210ENST00000539480 1743 ntTSL 2 BASIC20.67■□□□□ 0.9
SHROOM1Q2M3G4 CDK11A-205ENST00000378633 2458 ntTSL 1 (best) BASIC20.67■□□□□ 0.9
SHROOM1Q2M3G4 BCR-202ENST00000359540 4708 ntTSL 1 (best) BASIC20.67■□□□□ 0.9
SHROOM1Q2M3G4 ZBTB8A-201ENST00000316459 1943 ntTSL 1 (best) BASIC20.67■□□□□ 0.9
SHROOM1Q2M3G4 STK4-201ENST00000372801 2038 ntTSL 2 BASIC20.67■□□□□ 0.9
SHROOM1Q2M3G4 COPS7A-204ENST00000534947 2034 ntAPPRIS P1 TSL 1 (best) BASIC20.67■□□□□ 0.9
SHROOM1Q2M3G4 SOX12-201ENST00000342665 4630 ntAPPRIS P1 BASIC20.67■□□□□ 0.9
SHROOM1Q2M3G4 ATPIF1-201ENST00000335514 494 ntAPPRIS P1 TSL 1 (best) BASIC20.67■□□□□ 0.9
SHROOM1Q2M3G4 ROMO1-201ENST00000336695 496 ntAPPRIS P1 TSL 1 (best) BASIC20.67■□□□□ 0.9
SHROOM1Q2M3G4 DUSP12-201ENST00000367943 1270 ntAPPRIS P1 TSL 1 (best) BASIC20.67■□□□□ 0.9
SHROOM1Q2M3G4 RFXANK-202ENST00000392324 1059 ntTSL 1 (best) BASIC20.67■□□□□ 0.9
SHROOM1Q2M3G4 YBX2P1-201ENST00000394192 760 ntBASIC20.67■□□□□ 0.9
SHROOM1Q2M3G4 C22orf39-203ENST00000399568 1005 ntTSL 1 (best) BASIC20.67■□□□□ 0.9
SHROOM1Q2M3G4 CRCP-205ENST00000431089 942 ntTSL 2 BASIC20.67■□□□□ 0.9
SHROOM1Q2M3G4 AC103564.2-201ENST00000432853 1299 ntBASIC20.67■□□□□ 0.9
SHROOM1Q2M3G4 AC016999.1-201ENST00000447880 452 ntTSL 3 BASIC20.67■□□□□ 0.9
Retrieved 100 of 98,524 protein–RNA pairs in 38.7 ms