Protein–RNA interactions for Protein: P78423

CX3CL1, Fractalkine, humanhuman

Predictions only

Length 397 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CX3CL1P78423 CACNA1A-238ENST00000637276 7135 ntAPPRIS ALT2 TSL 5 BASIC14.38□□□□□ -0.11
CX3CL1P78423 PPP1R9B-202ENST00000612501 4167 ntAPPRIS P1 TSL 1 (best) BASIC14.38□□□□□ -0.11
CX3CL1P78423 MON1B-202ENST00000439557 1759 ntTSL 2 BASIC14.38□□□□□ -0.11
CX3CL1P78423 ZIC4-212ENST00000484399 1774 ntAPPRIS P1 TSL 2 BASIC14.38□□□□□ -0.11
CX3CL1P78423 NUDT8-201ENST00000301490 809 ntAPPRIS P3 TSL 1 (best) BASIC14.38□□□□□ -0.11
CX3CL1P78423 PTCRA-201ENST00000304672 1080 ntAPPRIS P3 TSL 1 (best) BASIC14.38□□□□□ -0.11
CX3CL1P78423 PARK7-201ENST00000338639 949 ntAPPRIS P1 TSL 1 (best) BASIC14.38□□□□□ -0.11
CX3CL1P78423 GUK1-204ENST00000366721 689 ntTSL 3 BASIC14.38□□□□□ -0.11
CX3CL1P78423 TBC1D7-205ENST00000379307 1084 ntTSL 1 (best) BASIC14.38□□□□□ -0.11
CX3CL1P78423 AC131097.3-201ENST00000413820 1228 ntTSL 1 (best) BASIC14.38□□□□□ -0.11
CX3CL1P78423 AL035541.1-201ENST00000424850 823 ntTSL 2 BASIC14.38□□□□□ -0.11
CX3CL1P78423 TMEM243-203ENST00000433078 1273 ntAPPRIS P1 TSL 2 BASIC14.38□□□□□ -0.11
CX3CL1P78423 PTCRA-202ENST00000441198 1005 ntTSL 1 (best) BASIC14.38□□□□□ -0.11
CX3CL1P78423 PTCRA-203ENST00000446507 759 ntTSL 1 (best) BASIC14.38□□□□□ -0.11
CX3CL1P78423 HOXD8-203ENST00000450510 1268 ntAPPRIS ALT2 TSL 1 (best) BASIC14.38□□□□□ -0.11
CX3CL1P78423 ELOVL2-AS1-202ENST00000456616 903 ntTSL 1 (best) BASIC14.38□□□□□ -0.11
CX3CL1P78423 AF250324.1-201ENST00000506276 703 ntTSL 3 BASIC14.38□□□□□ -0.11
CX3CL1P78423 AC113404.2-201ENST00000507884 177 ntBASIC14.38□□□□□ -0.11
CX3CL1P78423 LY6E-213ENST00000522528 606 ntTSL 3 BASIC14.38□□□□□ -0.11
CX3CL1P78423 MRPL52-210ENST00000555345 895 ntTSL 2 BASIC14.38□□□□□ -0.11
CX3CL1P78423 CLDN7-204ENST00000571881 735 ntTSL 3 BASIC14.38□□□□□ -0.11
CX3CL1P78423 TK1-205ENST00000590862 642 ntTSL 3 BASIC14.38□□□□□ -0.11
CX3CL1P78423 RPARP-AS1-206ENST00000596366 631 ntTSL 3 BASIC14.38□□□□□ -0.11
CX3CL1P78423 SPEG-225ENST00000617028 815 ntTSL 5 BASIC14.38□□□□□ -0.11
CX3CL1P78423 LITAF-220ENST00000620789 692 ntTSL 5 BASIC14.38□□□□□ -0.11
CX3CL1P78423 CAPN15-201ENST00000219611 4744 ntAPPRIS P1 TSL 1 (best) BASIC14.38□□□□□ -0.11
CX3CL1P78423 TADA1-201ENST00000367874 2159 ntAPPRIS P1 TSL 1 (best) BASIC14.38□□□□□ -0.11
CX3CL1P78423 PMAIP1-202ENST00000316660 1948 ntAPPRIS P1 TSL 1 (best) BASIC14.38□□□□□ -0.11
CX3CL1P78423 SMARCD3-202ENST00000356800 1669 ntTSL 1 (best) BASIC14.38□□□□□ -0.11
CX3CL1P78423 NR2E1-202ENST00000368986 3212 ntAPPRIS P1 TSL 1 (best) BASIC14.38□□□□□ -0.11
CX3CL1P78423 SBF2-AS1-201ENST00000498905 2709 ntTSL 5 BASIC14.38□□□□□ -0.11
CX3CL1P78423 CEP83-AS1-201ENST00000623122 2482 ntBASIC14.38□□□□□ -0.11
CX3CL1P78423 TMEM45B-201ENST00000281441 2234 ntAPPRIS P1 TSL 2 BASIC14.38□□□□□ -0.11
CX3CL1P78423 THUMPD2-204ENST00000505747 1970 ntAPPRIS P1 TSL 1 (best) BASIC14.38□□□□□ -0.11
CX3CL1P78423 MATN4-205ENST00000537548 1991 ntAPPRIS ALT2 TSL 5 BASIC14.38□□□□□ -0.11
CX3CL1P78423 MTMR14-203ENST00000353332 2368 ntAPPRIS ALT2 TSL 1 (best) BASIC14.38□□□□□ -0.11
CX3CL1P78423 ERI1-203ENST00000519292 2107 ntAPPRIS P1 TSL 2 BASIC14.38□□□□□ -0.11
CX3CL1P78423 TNRC18P3-201ENST00000441896 2691 ntBASIC14.38□□□□□ -0.11
CX3CL1P78423 LYSMD4-201ENST00000332728 2847 ntTSL 4 BASIC14.37□□□□□ -0.11
CX3CL1P78423 SLC23A3-203ENST00000409878 2010 ntAPPRIS P1 TSL 2 BASIC14.37□□□□□ -0.11
CX3CL1P78423 KCMF1-201ENST00000409785 7568 ntAPPRIS P1 TSL 1 (best) BASIC14.37□□□□□ -0.11
CX3CL1P78423 MYO19-225ENST00000621344 1640 ntTSL 2 BASIC14.37□□□□□ -0.11
CX3CL1P78423 KANSL2-212ENST00000550347 2714 ntTSL 1 (best) BASIC14.37□□□□□ -0.11
CX3CL1P78423 NARF-204ENST00000390006 1766 ntTSL 2 BASIC14.37□□□□□ -0.11
CX3CL1P78423 LPAR2-201ENST00000407877 1791 ntAPPRIS P1 TSL 1 (best) BASIC14.37□□□□□ -0.11
CX3CL1P78423 DLC1-203ENST00000358919 4392 ntAPPRIS ALT2 TSL 1 (best) BASIC14.37□□□□□ -0.11
CX3CL1P78423 MFSD2A-203ENST00000420632 1914 ntTSL 2 BASIC14.37□□□□□ -0.11
CX3CL1P78423 NOL3-211ENST00000568146 1351 ntAPPRIS ALT2 TSL 1 (best) BASIC14.37□□□□□ -0.11
CX3CL1P78423 SH2D3C-213ENST00000629203 2478 ntTSL 2 BASIC14.37□□□□□ -0.11
CX3CL1P78423 PCDHA8-201ENST00000378123 2616 ntAPPRIS ALT2 BASIC14.37□□□□□ -0.11
CX3CL1P78423 ARSA-201ENST00000216124 2050 ntAPPRIS P1 TSL 1 (best) BASIC14.37□□□□□ -0.11
CX3CL1P78423 NETO2-202ENST00000562435 7481 ntAPPRIS P3 TSL 1 (best) BASIC14.37□□□□□ -0.11
CX3CL1P78423 NADSYN1-201ENST00000319023 2773 ntAPPRIS P1 TSL 1 (best) BASIC14.37□□□□□ -0.11
CX3CL1P78423 TMSB4Y-201ENST00000284856 1669 ntAPPRIS P1 TSL 1 (best) BASIC14.37□□□□□ -0.11
CX3CL1P78423 TNFAIP1-202ENST00000544907 1656 ntTSL 2 BASIC14.37□□□□□ -0.11
CX3CL1P78423 SLC44A3-201ENST00000271227 2388 ntAPPRIS P1 TSL 1 (best) BASIC14.37□□□□□ -0.11
CX3CL1P78423 ZCWPW1-202ENST00000398027 2356 ntAPPRIS P3 TSL 1 (best) BASIC14.37□□□□□ -0.11
CX3CL1P78423 ACSL4-201ENST00000340800 5333 ntAPPRIS P4 TSL 5 BASIC14.37□□□□□ -0.11
CX3CL1P78423 RELL2-201ENST00000297164 2520 ntAPPRIS P1 TSL 1 (best) BASIC14.37□□□□□ -0.11
CX3CL1P78423 GAL3ST4-201ENST00000360039 2537 ntAPPRIS P1 TSL 1 (best) BASIC14.37□□□□□ -0.11
CX3CL1P78423 C17orf62-202ENST00000342572 1849 ntTSL 2 BASIC14.37□□□□□ -0.11
CX3CL1P78423 RRAGD-202ENST00000369415 4900 ntAPPRIS P1 TSL 1 (best) BASIC14.37□□□□□ -0.11
CX3CL1P78423 EIF4G3-205ENST00000400422 5762 ntAPPRIS ALT2 TSL 1 (best) BASIC14.37□□□□□ -0.11
CX3CL1P78423 FBLIM1-202ENST00000375766 3695 ntAPPRIS P1 TSL 2 BASIC14.37□□□□□ -0.11
CX3CL1P78423 DGUOK-201ENST00000264093 1144 ntAPPRIS P1 TSL 1 (best) BASIC14.37□□□□□ -0.11
CX3CL1P78423 GSTO2-201ENST00000338595 1179 ntAPPRIS P1 TSL 1 (best) BASIC14.37□□□□□ -0.11
CX3CL1P78423 DGUOK-202ENST00000348222 880 ntTSL 2 BASIC14.37□□□□□ -0.11
CX3CL1P78423 CDC26-201ENST00000374206 872 ntAPPRIS P1 TSL 1 (best) BASIC14.37□□□□□ -0.11
CX3CL1P78423 HES2-202ENST00000377836 507 ntTSL 2 BASIC14.37□□□□□ -0.11
CX3CL1P78423 MIR662-201ENST00000384847 95 ntBASIC14.37□□□□□ -0.11
CX3CL1P78423 HDAC11-AS1-201ENST00000424112 515 ntTSL 2 BASIC14.37□□□□□ -0.11
CX3CL1P78423 MYD88-206ENST00000443433 914 ntTSL 1 (best) BASIC14.37□□□□□ -0.11
CX3CL1P78423 MEAF6-205ENST00000448519 666 ntAPPRIS ALT1 TSL 1 (best) BASIC14.37□□□□□ -0.11
CX3CL1P78423 LBX1-AS1-203ENST00000454527 740 ntTSL 5 BASIC14.37□□□□□ -0.11
CX3CL1P78423 LCN10-205ENST00000497771 723 ntAPPRIS P2 TSL 1 (best) BASIC14.37□□□□□ -0.11
CX3CL1P78423 AP005717.1-202ENST00000523563 419 ntTSL 3 BASIC14.37□□□□□ -0.11
CX3CL1P78423 TMEM218-206ENST00000527766 812 ntAPPRIS P1 TSL 3 BASIC14.37□□□□□ -0.11
CX3CL1P78423 AC127526.4-201ENST00000527970 983 ntTSL 3 BASIC14.37□□□□□ -0.11
CX3CL1P78423 NME3-204ENST00000563498 920 ntTSL 2 BASIC14.37□□□□□ -0.11
CX3CL1P78423 TEN1-204ENST00000588202 862 ntTSL 3 BASIC14.37□□□□□ -0.11
CX3CL1P78423 SLF2-205ENST00000609386 891 ntAPPRIS ALT2 BASIC14.37□□□□□ -0.11
CX3CL1P78423 DGUOK-208ENST00000629438 1029 ntTSL 1 (best) BASIC14.37□□□□□ -0.11
CX3CL1P78423 CLN3-259ENST00000637551 1083 ntTSL 5 BASIC14.37□□□□□ -0.11
CX3CL1P78423 HMGXB3-201ENST00000502717 4974 ntAPPRIS P2 TSL 1 (best) BASIC14.37□□□□□ -0.11
CX3CL1P78423 KLC2-203ENST00000394066 2591 ntTSL 2 BASIC14.37□□□□□ -0.11
CX3CL1P78423 BMS1P4-202ENST00000584747 1716 ntTSL 1 (best) BASIC14.37□□□□□ -0.11
CX3CL1P78423 TMEM183A-201ENST00000367242 3019 ntAPPRIS P1 TSL 1 (best) BASIC14.37□□□□□ -0.11
CX3CL1P78423 TPRA1-204ENST00000450633 1865 ntAPPRIS P1 TSL 1 (best) BASIC14.37□□□□□ -0.11
CX3CL1P78423 PSMD11-202ENST00000457654 2159 ntAPPRIS P1 TSL 2 BASIC14.37□□□□□ -0.11
CX3CL1P78423 MMP17-206ENST00000535291 2301 ntAPPRIS ALT2 TSL 1 (best) BASIC14.37□□□□□ -0.11
CX3CL1P78423 EML2-203ENST00000536630 2791 ntAPPRIS ALT2 TSL 2 BASIC14.37□□□□□ -0.11
CX3CL1P78423 HMGA1-201ENST00000311487 1920 ntAPPRIS P4 TSL 1 (best) BASIC14.37□□□□□ -0.11
CX3CL1P78423 LINC00602-201ENST00000629776 2065 ntBASIC14.37□□□□□ -0.11
CX3CL1P78423 POC1B-GALNT4-201ENST00000547474 2207 ntTSL 2 BASIC14.37□□□□□ -0.11
CX3CL1P78423 AC134043.2-201ENST00000624206 2238 ntBASIC14.37□□□□□ -0.11
CX3CL1P78423 SLC47A2-202ENST00000350657 2285 ntAPPRIS ALT2 TSL 1 (best) BASIC14.36□□□□□ -0.11
CX3CL1P78423 EPS8L2-205ENST00000526198 2289 ntAPPRIS ALT2 TSL 1 (best) BASIC14.36□□□□□ -0.11
CX3CL1P78423 WSCD1-209ENST00000574232 2129 ntAPPRIS P1 TSL 5 BASIC14.36□□□□□ -0.11
CX3CL1P78423 FLJ13224-201ENST00000313737 1514 ntBASIC14.36□□□□□ -0.11
CX3CL1P78423 NFATC2-206ENST00000609943 5690 ntAPPRIS ALT2 TSL 1 (best) BASIC14.36□□□□□ -0.11
Retrieved 100 of 98,524 protein–RNA pairs in 26 ms