Protein–RNA interactions for Protein: P55347

PKNOX1, Homeobox protein PKNOX1, humanhuman

Predictions only

Length 436 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
PKNOX1P55347 CRAT-202ENST00000393384 973 ntTSL 2 BASIC17.51■□□□□ 0.39
PKNOX1P55347 YPEL3-202ENST00000398841 1588 ntTSL 1 (best) BASIC17.51■□□□□ 0.39
PKNOX1P55347 PDIA2-202ENST00000404312 1575 ntAPPRIS ALT2 TSL 5 BASIC17.51■□□□□ 0.39
PKNOX1P55347 HDAC11-205ENST00000404548 577 ntTSL 4 BASIC17.51■□□□□ 0.39
PKNOX1P55347 WWOX-203ENST00000406884 1701 ntTSL 1 (best) BASIC17.51■□□□□ 0.39
PKNOX1P55347 FAHD2CP-202ENST00000443258 893 ntTSL 3 BASIC17.51■□□□□ 0.39
PKNOX1P55347 AC007563.2-201ENST00000447289 552 ntTSL 5 BASIC17.51■□□□□ 0.39
PKNOX1P55347 AC002467.1-201ENST00000457510 657 ntTSL 3 BASIC17.51■□□□□ 0.39
PKNOX1P55347 ABHD11-207ENST00000458339 890 ntTSL 3 BASIC17.51■□□□□ 0.39
PKNOX1P55347 DCTN3-209ENST00000477738 713 ntTSL 3 BASIC17.51■□□□□ 0.39
PKNOX1P55347 EHMT1-211ENST00000482340 691 ntTSL 5 BASIC17.51■□□□□ 0.39
PKNOX1P55347 LINC01184-202ENST00000501173 949 ntTSL 5 BASIC17.51■□□□□ 0.39
PKNOX1P55347 TXNRD2-218ENST00000542719 2024 ntTSL 1 (best) BASIC17.51■□□□□ 0.39
PKNOX1P55347 SIGLEC15-202ENST00000546268 1054 ntTSL 2 BASIC17.51■□□□□ 0.39
PKNOX1P55347 C16orf74-207ENST00000602914 761 ntAPPRIS ALT2 TSL 2 BASIC17.51■□□□□ 0.39
PKNOX1P55347 FMR1-AS1_2.1-201ENST00000613724 127 ntBASIC17.51■□□□□ 0.39
PKNOX1P55347 HNRNPM-217ENST00000620401 2458 ntAPPRIS ALT2 TSL 1 (best) BASIC17.51■□□□□ 0.39
PKNOX1P55347 ATG4B-226ENST00000625810 370 ntTSL 4 BASIC17.51■□□□□ 0.39
PKNOX1P55347 METTL21A-203ENST00000411432 4805 ntAPPRIS P1 TSL 2 BASIC17.51■□□□□ 0.39
PKNOX1P55347 GDPD5-214ENST00000533784 2441 ntTSL 1 (best) BASIC17.51■□□□□ 0.39
PKNOX1P55347 CXXC1-202ENST00000412036 2280 ntAPPRIS ALT1 TSL 1 (best) BASIC17.51■□□□□ 0.39
PKNOX1P55347 COQ6-201ENST00000334571 2118 ntAPPRIS P1 TSL 1 (best) BASIC17.51■□□□□ 0.39
PKNOX1P55347 FAM72C-201ENST00000369175 1658 ntTSL 1 (best) BASIC17.51■□□□□ 0.39
PKNOX1P55347 FAM72B-207ENST00000619376 1659 ntTSL 1 (best) BASIC17.51■□□□□ 0.39
PKNOX1P55347 L3HYPDH-201ENST00000247194 1527 ntAPPRIS P1 TSL 1 (best) BASIC17.51■□□□□ 0.39
PKNOX1P55347 DOCK7-203ENST00000404627 2678 ntTSL 2 BASIC17.51■□□□□ 0.39
PKNOX1P55347 SMARCA4-215ENST00000590574 5282 ntAPPRIS ALT1 TSL 5 BASIC17.51■□□□□ 0.39
PKNOX1P55347 NUMBL-207ENST00000598779 2249 ntAPPRIS ALT2 TSL 1 (best) BASIC17.51■□□□□ 0.39
PKNOX1P55347 KCNN2-208ENST00000631899 2098 ntAPPRIS ALT2 TSL 5 BASIC17.51■□□□□ 0.39
PKNOX1P55347 KLHDC3-201ENST00000244670 1903 ntTSL 1 (best) BASIC17.51■□□□□ 0.39
PKNOX1P55347 MAGI1-213ENST00000483466 4791 ntAPPRIS P3 TSL 1 (best) BASIC17.51■□□□□ 0.39
PKNOX1P55347 DNM3-203ENST00000367733 2322 ntTSL 1 (best) BASIC17.5■□□□□ 0.39
PKNOX1P55347 AP001094.4-201ENST00000579008 2176 ntBASIC17.5■□□□□ 0.39
PKNOX1P55347 FOSB-209ENST00000590335 2170 ntTSL 1 (best) BASIC17.5■□□□□ 0.39
PKNOX1P55347 FNDC5-201ENST00000373471 2732 ntAPPRIS ALT2 TSL 2 BASIC17.5■□□□□ 0.39
PKNOX1P55347 GUCY1B3-206ENST00000507146 2709 ntTSL 1 (best) BASIC17.5■□□□□ 0.39
PKNOX1P55347 C11orf58-201ENST00000228136 2049 ntAPPRIS P1 TSL 1 (best) BASIC17.5■□□□□ 0.39
PKNOX1P55347 ALDH3B1-206ENST00000615463 1300 ntTSL 1 (best) BASIC17.5■□□□□ 0.39
PKNOX1P55347 GALNT9-201ENST00000328957 2410 ntAPPRIS P1 TSL 1 (best) BASIC17.5■□□□□ 0.39
PKNOX1P55347 REPIN1-203ENST00000444957 2969 ntAPPRIS P3 TSL 1 (best) BASIC17.5■□□□□ 0.39
PKNOX1P55347 SYTL3-201ENST00000297239 2292 ntAPPRIS ALT1 TSL 1 (best) BASIC17.5■□□□□ 0.39
PKNOX1P55347 YKT6-201ENST00000223369 2696 ntAPPRIS P1 TSL 1 (best) BASIC17.5■□□□□ 0.39
PKNOX1P55347 SCNN1D-201ENST00000325425 2679 ntAPPRIS ALT2 TSL 1 (best) BASIC17.5■□□□□ 0.39
PKNOX1P55347 AUNIP-201ENST00000374298 2116 ntAPPRIS P1 TSL 1 (best) BASIC17.5■□□□□ 0.39
PKNOX1P55347 ACP6-201ENST00000392988 1555 ntTSL 1 (best) BASIC17.5■□□□□ 0.39
PKNOX1P55347 NFKBIL1-201ENST00000376145 1401 ntTSL 1 (best) BASIC17.5■□□□□ 0.39
PKNOX1P55347 WNT5B-203ENST00000537031 1437 ntAPPRIS P1 TSL 2 BASIC17.5■□□□□ 0.39
PKNOX1P55347 KLHDC4-227ENST00000622456 1422 ntTSL 5 BASIC17.5■□□□□ 0.39
PKNOX1P55347 DTX2-201ENST00000324432 2769 ntAPPRIS P3 TSL 1 (best) BASIC17.5■□□□□ 0.39
PKNOX1P55347 ELN-207ENST00000380562 2240 ntAPPRIS ALT2 TSL 1 (best) BASIC17.5■□□□□ 0.39
PKNOX1P55347 RASSF5-205ENST00000581503 5586 ntTSL 1 (best) BASIC17.5■□□□□ 0.39
PKNOX1P55347 KRAS-201ENST00000256078 1119 ntAPPRIS P4 TSL 1 (best) BASIC17.5■□□□□ 0.39
PKNOX1P55347 TSTD1-202ENST00000368023 574 ntAPPRIS ALT2 TSL 2 BASIC17.5■□□□□ 0.39
PKNOX1P55347 CALML5-201ENST00000380332 859 ntAPPRIS P1 BASIC17.5■□□□□ 0.39
PKNOX1P55347 PVRIG2P-201ENST00000435460 978 ntBASIC17.5■□□□□ 0.39
PKNOX1P55347 FBXO32-202ENST00000443022 1227 ntTSL 1 (best) BASIC17.5■□□□□ 0.39
PKNOX1P55347 TSPY15P-201ENST00000457163 923 ntBASIC17.5■□□□□ 0.39
PKNOX1P55347 MTHFS-202ENST00000559722 948 ntTSL 2 BASIC17.5■□□□□ 0.39
PKNOX1P55347 MXD4-201ENST00000337190 4056 ntAPPRIS P1 TSL 1 (best) BASIC17.5■□□□□ 0.39
PKNOX1P55347 TRPC1-201ENST00000273482 4324 ntAPPRIS P3 TSL 1 (best) BASIC17.5■□□□□ 0.39
PKNOX1P55347 TTC8-202ENST00000345383 2329 ntTSL 5 BASIC17.5■□□□□ 0.39
PKNOX1P55347 CHRM4-201ENST00000433765 1511 ntAPPRIS P1 BASIC17.5■□□□□ 0.39
PKNOX1P55347 GABBR1-205ENST00000377034 4527 ntAPPRIS P1 TSL 1 (best) BASIC17.5■□□□□ 0.39
PKNOX1P55347 ERLEC1-201ENST00000185150 2433 ntAPPRIS P3 TSL 1 (best) BASIC17.5■□□□□ 0.39
PKNOX1P55347 IGFBP7-AS1-201ENST00000499667 1389 ntTSL 1 (best) BASIC17.5■□□□□ 0.39
PKNOX1P55347 GOLGA2P9-203ENST00000600260 2033 ntTSL 1 (best) BASIC17.5■□□□□ 0.39
PKNOX1P55347 PCDHA7-202ENST00000525929 5221 ntAPPRIS P2 TSL 1 (best) BASIC17.5■□□□□ 0.39
PKNOX1P55347 BAZ1B-201ENST00000339594 6102 ntAPPRIS P1 TSL 1 (best) BASIC17.5■□□□□ 0.39
PKNOX1P55347 PODXL-202ENST00000378555 2105 ntAPPRIS P3 TSL 1 (best) BASIC17.5■□□□□ 0.39
PKNOX1P55347 PBK-203ENST00000522944 1499 ntTSL 2 BASIC17.5■□□□□ 0.39
PKNOX1P55347 AL079303.2-201ENST00000555107 2613 ntTSL 3 BASIC17.5■□□□□ 0.39
PKNOX1P55347 ZNF296-201ENST00000303809 1744 ntAPPRIS P2 TSL 1 (best) BASIC17.5■□□□□ 0.39
PKNOX1P55347 CYP2D6-204ENST00000389970 1714 ntTSL 5 BASIC17.5■□□□□ 0.39
PKNOX1P55347 GPAT2P1-202ENST00000471661 1569 ntTSL 2 BASIC17.49■□□□□ 0.39
PKNOX1P55347 CDC73-201ENST00000367435 4969 ntAPPRIS P1 TSL 1 (best) BASIC17.49■□□□□ 0.39
PKNOX1P55347 LINC01569-202ENST00000573042 2093 ntTSL 2 BASIC17.49■□□□□ 0.39
PKNOX1P55347 NBL1-210ENST00000615215 2160 ntAPPRIS ALT2 TSL 1 (best) BASIC17.49■□□□□ 0.39
PKNOX1P55347 CXorf67-201ENST00000342995 1929 ntAPPRIS P1 BASIC17.49■□□□□ 0.39
PKNOX1P55347 UQCC3-201ENST00000377953 1947 ntAPPRIS P1 TSL 1 (best) BASIC17.49■□□□□ 0.39
PKNOX1P55347 CTSB-204ENST00000453527 2011 ntAPPRIS P1 TSL 2 BASIC17.49■□□□□ 0.39
PKNOX1P55347 MPV17L-201ENST00000287594 5820 ntTSL 1 (best) BASIC17.49■□□□□ 0.39
PKNOX1P55347 TSPYL5-201ENST00000322128 4491 ntAPPRIS P1 BASIC17.49■□□□□ 0.39
PKNOX1P55347 F11R-202ENST00000368026 4835 ntAPPRIS P1 TSL 1 (best) BASIC17.49■□□□□ 0.39
PKNOX1P55347 C3orf58-201ENST00000315691 4346 ntAPPRIS P1 TSL 1 (best) BASIC17.49■□□□□ 0.39
PKNOX1P55347 TSPAN14-202ENST00000341863 1037 ntTSL 5 BASIC17.49■□□□□ 0.39
PKNOX1P55347 Telomerase-vert.1-201ENST00000363312 438 ntBASIC17.49■□□□□ 0.39
PKNOX1P55347 S100A16-203ENST00000368705 956 ntAPPRIS P1 TSL 1 (best) BASIC17.49■□□□□ 0.39
PKNOX1P55347 TSPAN14-205ENST00000372158 1095 ntAPPRIS P1 TSL 5 BASIC17.49■□□□□ 0.39
PKNOX1P55347 POLR2J-202ENST00000393794 784 ntTSL 1 (best) BASIC17.49■□□□□ 0.39
PKNOX1P55347 DNPH1-202ENST00000393987 796 ntTSL 2 BASIC17.49■□□□□ 0.39
PKNOX1P55347 AC234772.2-201ENST00000456532 375 ntTSL 3 BASIC17.49■□□□□ 0.39
PKNOX1P55347 ECEL1P2-202ENST00000465689 757 ntBASIC17.49■□□□□ 0.39
PKNOX1P55347 NCAM1-AS1-201ENST00000526229 1081 ntTSL 2 BASIC17.49■□□□□ 0.39
PKNOX1P55347 CMTM3-210ENST00000565666 769 ntTSL 3 BASIC17.49■□□□□ 0.39
PKNOX1P55347 MCF2L-208ENST00000397030 6580 ntTSL 2 BASIC17.49■□□□□ 0.39
PKNOX1P55347 AL360181.3-201ENST00000468317 1605 ntAPPRIS P1 TSL 5 BASIC17.49■□□□□ 0.39
PKNOX1P55347 WDR18-202ENST00000585809 1608 ntAPPRIS P1 TSL 1 (best) BASIC17.49■□□□□ 0.39
PKNOX1P55347 ZIC3-202ENST00000370606 1968 ntTSL 5 BASIC17.49■□□□□ 0.39
PKNOX1P55347 LRRFIP2-209ENST00000440230 1989 ntTSL 5 BASIC17.49■□□□□ 0.39
PKNOX1P55347 TMEM175-222ENST00000622959 1967 ntTSL 1 (best) BASIC17.49■□□□□ 0.39
Retrieved 100 of 98,524 protein–RNA pairs in 37.7 ms