Protein–RNA interactions for Protein: P48742

LHX1, LIM/homeobox protein Lhx1, humanhuman

Predictions only

Length 406 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
LHX1P48742 TM4SF19-TCTEX1D2-201ENST00000442633 964 ntAPPRIS P1 TSL 1 (best) BASIC18.84■□□□□ 0.61
LHX1P48742 SCARNA2-201ENST00000458748 420 ntBASIC18.84■□□□□ 0.61
LHX1P48742 AC004801.5-202ENST00000546804 530 ntTSL 4 BASIC18.84■□□□□ 0.61
LHX1P48742 ATPAF2-213ENST00000585101 566 ntTSL 4 BASIC18.84■□□□□ 0.61
LHX1P48742 KLK8-205ENST00000593490 267 ntTSL 3 BASIC18.84■□□□□ 0.61
LHX1P48742 Z94160.2-201ENST00000609322 910 ntTSL 1 (best) BASIC18.84■□□□□ 0.61
LHX1P48742 AD001527.2-201ENST00000622994 785 ntBASIC18.84■□□□□ 0.61
LHX1P48742 PTGES2-201ENST00000277462 1614 ntTSL 2 BASIC18.84■□□□□ 0.61
LHX1P48742 CITED2-201ENST00000367651 2354 ntAPPRIS P1 TSL 1 (best) BASIC18.84■□□□□ 0.61
LHX1P48742 ZDHHC4-205ENST00000396713 1552 ntAPPRIS P1 TSL 1 (best) BASIC18.84■□□□□ 0.61
LHX1P48742 TSKS-201ENST00000246801 1883 ntAPPRIS P2 TSL 1 (best) BASIC18.84■□□□□ 0.61
LHX1P48742 USP32-201ENST00000300896 5171 ntAPPRIS P1 TSL 1 (best) BASIC18.84■□□□□ 0.61
LHX1P48742 DPH6-AS1-201ENST00000501169 1477 ntTSL 1 (best) BASIC18.84■□□□□ 0.61
LHX1P48742 SERPINE2-201ENST00000258405 2195 ntAPPRIS P3 TSL 1 (best) BASIC18.83■□□□□ 0.61
LHX1P48742 RABL2A-204ENST00000393167 2179 ntAPPRIS P3 TSL 1 (best) BASIC18.83■□□□□ 0.61
LHX1P48742 NSUN5P2-205ENST00000602348 1776 ntTSL 1 (best) BASIC18.83■□□□□ 0.61
LHX1P48742 TRAF3-203ENST00000392745 2459 ntAPPRIS P1 TSL 1 (best) BASIC18.83■□□□□ 0.61
LHX1P48742 CALB2-202ENST00000349553 1373 ntTSL 5 BASIC18.83■□□□□ 0.61
LHX1P48742 AHCYL2-201ENST00000325006 5056 ntAPPRIS P3 TSL 1 (best) BASIC18.83■□□□□ 0.61
LHX1P48742 ZNF397-204ENST00000585800 2046 ntTSL 5 BASIC18.83■□□□□ 0.61
LHX1P48742 SLC29A4-202ENST00000396872 5685 ntAPPRIS P1 TSL 1 (best) BASIC18.83■□□□□ 0.61
LHX1P48742 EMC8-201ENST00000253457 1962 ntAPPRIS P1 TSL 1 (best) BASIC18.83■□□□□ 0.61
LHX1P48742 CCDC115-201ENST00000259229 1646 ntAPPRIS P1 TSL 1 (best) BASIC18.83■□□□□ 0.61
LHX1P48742 LRCH4-201ENST00000310300 2552 ntAPPRIS P1 TSL 1 (best) BASIC18.83■□□□□ 0.6
LHX1P48742 RGS9BP-201ENST00000334176 2894 ntAPPRIS P1 BASIC18.83■□□□□ 0.6
LHX1P48742 PRSS27-201ENST00000302641 1130 ntAPPRIS P1 TSL 1 (best) BASIC18.83■□□□□ 0.6
LHX1P48742 VAMP5-201ENST00000306384 689 ntAPPRIS P1 TSL 1 (best) BASIC18.83■□□□□ 0.6
LHX1P48742 MRPL52-202ENST00000355151 1118 ntAPPRIS ALT1 TSL 1 (best) BASIC18.83■□□□□ 0.6
LHX1P48742 ROMO1-203ENST00000374077 422 ntAPPRIS P1 TSL 1 (best) BASIC18.83■□□□□ 0.6
LHX1P48742 DNASE1L2-202ENST00000382437 1222 ntAPPRIS P1 TSL 1 (best) BASIC18.83■□□□□ 0.6
LHX1P48742 FAM3A-205ENST00000393572 1041 ntTSL 2 BASIC18.83■□□□□ 0.6
LHX1P48742 MRPL52-203ENST00000397496 1111 ntAPPRIS P3 TSL 2 BASIC18.83■□□□□ 0.6
LHX1P48742 MYCNOS-201ENST00000419083 770 ntTSL 1 (best) BASIC18.83■□□□□ 0.6
LHX1P48742 FGFR3P6-201ENST00000457012 610 ntBASIC18.83■□□□□ 0.6
LHX1P48742 MCCC2-205ENST00000509358 1214 ntTSL 1 (best) BASIC18.83■□□□□ 0.6
LHX1P48742 AC021066.1-201ENST00000549788 647 ntTSL 3 BASIC18.83■□□□□ 0.6
LHX1P48742 AC036176.1-201ENST00000589905 785 ntTSL 2 BASIC18.83■□□□□ 0.6
LHX1P48742 AC064862.7-201ENST00000604520 867 ntBASIC18.83■□□□□ 0.6
LHX1P48742 LCE1E-203ENST00000619588 267 ntAPPRIS ALT2 TSL 5 BASIC18.83■□□□□ 0.6
LHX1P48742 TST-204ENST00000622841 1105 ntAPPRIS P1 TSL 5 BASIC18.83■□□□□ 0.6
LHX1P48742 POC1B-GALNT4-201ENST00000547474 2207 ntTSL 2 BASIC18.83■□□□□ 0.6
LHX1P48742 LINC00683-201ENST00000578803 2221 ntTSL 2 BASIC18.83■□□□□ 0.6
LHX1P48742 NOTCH2NL-201ENST00000362074 1874 ntAPPRIS P2 TSL 1 (best) BASIC18.83■□□□□ 0.6
LHX1P48742 EI24-201ENST00000278903 2455 ntAPPRIS P1 TSL 1 (best) BASIC18.83■□□□□ 0.6
LHX1P48742 MAFF-206ENST00000538320 2458 ntAPPRIS P1 TSL 4 BASIC18.83■□□□□ 0.6
LHX1P48742 GPR135-201ENST00000395116 4578 ntAPPRIS P1 BASIC18.83■□□□□ 0.6
LHX1P48742 TMUB2-213ENST00000589856 1505 ntTSL 2 BASIC18.83■□□□□ 0.6
LHX1P48742 LRCH2-202ENST00000538422 4868 ntAPPRIS ALT2 TSL 1 (best) BASIC18.83■□□□□ 0.6
LHX1P48742 GPS1-201ENST00000306823 1842 ntAPPRIS P3 TSL 1 (best) BASIC18.83■□□□□ 0.6
LHX1P48742 COL18A1-204ENST00000400337 5436 ntTSL 1 (best) BASIC18.83■□□□□ 0.6
LHX1P48742 SHKBP1-201ENST00000291842 2363 ntAPPRIS P1 TSL 1 (best) BASIC18.83■□□□□ 0.6
LHX1P48742 FDFT1-226ENST00000623368 2368 ntTSL 2 BASIC18.83■□□□□ 0.6
LHX1P48742 NRSN2-202ENST00000382291 2088 ntAPPRIS P1 TSL 2 BASIC18.83■□□□□ 0.6
LHX1P48742 WDR18-204ENST00000587001 1465 ntTSL 5 BASIC18.83■□□□□ 0.6
LHX1P48742 GINS4-206ENST00000520710 2022 ntTSL 2 BASIC18.83■□□□□ 0.6
LHX1P48742 PSRC1-203ENST00000369907 1717 ntAPPRIS P3 TSL 1 (best) BASIC18.83■□□□□ 0.6
LHX1P48742 PSRC1-206ENST00000409267 1730 ntAPPRIS P3 TSL 5 BASIC18.83■□□□□ 0.6
LHX1P48742 POMT2-201ENST00000261534 4876 ntAPPRIS P1 TSL 1 (best) BASIC18.83■□□□□ 0.6
LHX1P48742 STAP2-201ENST00000594605 1426 ntAPPRIS ALT2 TSL 1 (best) BASIC18.83■□□□□ 0.6
LHX1P48742 TREX2-201ENST00000330912 2262 ntAPPRIS P1 TSL 1 (best) BASIC18.83■□□□□ 0.6
LHX1P48742 PLA2G4C-222ENST00000599921 1984 ntAPPRIS P3 TSL 1 (best) BASIC18.82■□□□□ 0.6
LHX1P48742 WDR1-205ENST00000502702 1691 ntTSL 5 BASIC18.82■□□□□ 0.6
LHX1P48742 ZNF133-211ENST00000538547 2245 ntTSL 2 BASIC18.82■□□□□ 0.6
LHX1P48742 ANKIB1-201ENST00000265742 6081 ntAPPRIS P1 TSL 1 (best) BASIC18.82■□□□□ 0.6
LHX1P48742 CBS-203ENST00000398158 2453 ntAPPRIS P1 TSL 1 (best) BASIC18.82■□□□□ 0.6
LHX1P48742 CBSL-206ENST00000624406 2453 ntAPPRIS P1 TSL 1 (best) BASIC18.82■□□□□ 0.6
LHX1P48742 POLR1D-220ENST00000637071 1943 ntTSL 5 BASIC18.82■□□□□ 0.6
LHX1P48742 NKIRAS1-207ENST00000437230 1898 ntAPPRIS ALT1 TSL 5 BASIC18.82■□□□□ 0.6
LHX1P48742 ADAP2-201ENST00000330889 2934 ntAPPRIS P2 TSL 1 (best) BASIC18.82■□□□□ 0.6
LHX1P48742 CHD1L-204ENST00000431239 2907 ntTSL 5 BASIC18.82■□□□□ 0.6
LHX1P48742 LHFPL6-201ENST00000379589 2110 ntAPPRIS P1 TSL 1 (best) BASIC18.82■□□□□ 0.6
LHX1P48742 RUVBL1-202ENST00000464873 2126 ntTSL 2 BASIC18.82■□□□□ 0.6
LHX1P48742 PSMD4-201ENST00000368881 1333 ntTSL 5 BASIC18.82■□□□□ 0.6
LHX1P48742 SLC16A5-203ENST00000538213 1842 ntAPPRIS ALT2 TSL 2 BASIC18.82■□□□□ 0.6
LHX1P48742 MAEA-201ENST00000264750 2058 ntTSL 2 BASIC18.82■□□□□ 0.6
LHX1P48742 FERMT2-204ENST00000399304 2082 ntTSL 1 (best) BASIC18.82■□□□□ 0.6
LHX1P48742 RAI2-201ENST00000331511 2317 ntAPPRIS P1 TSL 2 BASIC18.82■□□□□ 0.6
LHX1P48742 ZNF7-201ENST00000325217 592 ntTSL 4 BASIC18.82■□□□□ 0.6
LHX1P48742 SMOX-204ENST00000346595 982 ntTSL 1 (best) BASIC18.82■□□□□ 0.6
LHX1P48742 OLFM1-207ENST00000371801 568 ntTSL 2 BASIC18.82■□□□□ 0.6
LHX1P48742 EXOSC3-202ENST00000396521 768 ntTSL 2 BASIC18.82■□□□□ 0.6
LHX1P48742 FDX1P1-201ENST00000449115 551 ntBASIC18.82■□□□□ 0.6
LHX1P48742 GOLGA7-203ENST00000518270 808 ntAPPRIS P1 TSL 5 BASIC18.82■□□□□ 0.6
LHX1P48742 AL662844.1-201ENST00000546340 181 ntBASIC18.82■□□□□ 0.6
LHX1P48742 AC135776.2-201ENST00000567803 714 ntTSL 4 BASIC18.82■□□□□ 0.6
LHX1P48742 TMED1-207ENST00000591695 809 ntTSL 5 BASIC18.82■□□□□ 0.6
LHX1P48742 MUC1-224ENST00000611577 1023 ntTSL 1 (best) BASIC18.82■□□□□ 0.6
LHX1P48742 ETS1-208ENST00000535549 4594 ntTSL 1 (best) BASIC18.82■□□□□ 0.6
LHX1P48742 PEX16-201ENST00000241041 1479 ntTSL 1 (best) BASIC18.82■□□□□ 0.6
LHX1P48742 FCER2-202ENST00000360067 1482 ntAPPRIS ALT2 TSL 5 BASIC18.82■□□□□ 0.6
LHX1P48742 CARD10-202ENST00000403299 4113 ntAPPRIS P1 TSL 5 BASIC18.82■□□□□ 0.6
LHX1P48742 FOLH1-204ENST00000356696 2403 ntTSL 1 (best) BASIC18.82■□□□□ 0.6
LHX1P48742 ALDH3A1-206ENST00000457500 1925 ntAPPRIS P1 TSL 1 (best) BASIC18.82■□□□□ 0.6
LHX1P48742 RNF2-201ENST00000367509 1677 ntTSL 2 BASIC18.82■□□□□ 0.6
LHX1P48742 NOX4-201ENST00000263317 2388 ntAPPRIS P1 TSL 1 (best) BASIC18.82■□□□□ 0.6
LHX1P48742 SAMD11-212ENST00000617307 2314 ntAPPRIS ALT2 TSL 5 BASIC18.82■□□□□ 0.6
LHX1P48742 WRNIP1-202ENST00000380769 3239 ntTSL 1 (best) BASIC18.81■□□□□ 0.6
LHX1P48742 MFHAS1-201ENST00000276282 6414 ntAPPRIS P1 TSL 1 (best) BASIC18.81■□□□□ 0.6
LHX1P48742 UNC5D-204ENST00000420357 2966 ntTSL 5 BASIC18.81■□□□□ 0.6
LHX1P48742 AC138932.1-201ENST00000534164 6830 ntBASIC18.81■□□□□ 0.6
Retrieved 100 of 98,524 protein–RNA pairs in 62.5 ms