Protein–RNA interactions for Protein: P40938

RFC3, Replication factor C subunit 3, humanhuman

Predictions only

Length 356 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
RFC3P40938 ANKRD18DP-201ENST00000335478 2171 ntTSL 2 BASIC16.3■□□□□ 0.2
RFC3P40938 AC125634.1-201ENST00000438758 1403 ntBASIC16.3■□□□□ 0.2
RFC3P40938 PEX5L-206ENST00000465751 2147 ntAPPRIS ALT2 TSL 2 BASIC16.3■□□□□ 0.2
RFC3P40938 ERI1-203ENST00000519292 2107 ntAPPRIS P1 TSL 2 BASIC16.3■□□□□ 0.2
RFC3P40938 NOP14-204ENST00000502735 2723 ntAPPRIS ALT2 TSL 5 BASIC16.3■□□□□ 0.2
RFC3P40938 MED16-201ENST00000269814 1199 ntTSL 5 BASIC16.3■□□□□ 0.2
RFC3P40938 EXOSC4-201ENST00000316052 887 ntAPPRIS P1 TSL 1 (best) BASIC16.3■□□□□ 0.2
RFC3P40938 LCE1D-201ENST00000326233 430 ntAPPRIS P1 TSL 5 BASIC16.3■□□□□ 0.2
RFC3P40938 PTRHD1-201ENST00000328379 1105 ntAPPRIS P1 TSL 1 (best) BASIC16.3■□□□□ 0.2
RFC3P40938 FUOM-202ENST00000368551 628 ntTSL 3 BASIC16.3■□□□□ 0.2
RFC3P40938 SERF1B-202ENST00000380751 703 ntAPPRIS P1 TSL 1 (best) BASIC16.3■□□□□ 0.2
RFC3P40938 ASGR1-202ENST00000380920 944 ntTSL 3 BASIC16.3■□□□□ 0.2
RFC3P40938 METTL21A-205ENST00000426075 1051 ntAPPRIS P1 TSL 2 BASIC16.3■□□□□ 0.2
RFC3P40938 FAM197Y8-203ENST00000450145 560 ntBASIC16.3■□□□□ 0.2
RFC3P40938 AC234772.2-201ENST00000456532 375 ntTSL 3 BASIC16.3■□□□□ 0.2
RFC3P40938 FAM220A-205ENST00000578372 207 ntAPPRIS P1 TSL 1 (best) BASIC16.3■□□□□ 0.2
RFC3P40938 LDHAL6A-203ENST00000615355 1042 ntTSL 5 BASIC16.3■□□□□ 0.2
RFC3P40938 KRT5-201ENST00000252242 2531 ntAPPRIS P1 TSL 1 (best) BASIC16.3■□□□□ 0.2
RFC3P40938 MBD1-208ENST00000398493 1845 ntTSL 5 BASIC16.3■□□□□ 0.2
RFC3P40938 PML-205ENST00000395132 1738 ntTSL 1 (best) BASIC16.3■□□□□ 0.2
RFC3P40938 DTX2-211ENST00000446600 2281 ntTSL 2 BASIC16.3■□□□□ 0.2
RFC3P40938 FAM72C-202ENST00000584486 2297 ntAPPRIS P1 TSL 1 (best) BASIC16.3■□□□□ 0.2
RFC3P40938 CHRNA4-201ENST00000370263 5577 ntAPPRIS P1 TSL 1 (best) BASIC16.3■□□□□ 0.2
RFC3P40938 PGLYRP2-202ENST00000340880 2230 ntAPPRIS P2 TSL 1 (best) BASIC16.3■□□□□ 0.2
RFC3P40938 SLCO4A1-201ENST00000217159 2776 ntAPPRIS P1 TSL 1 (best) BASIC16.3■□□□□ 0.2
RFC3P40938 PLAUR-201ENST00000221264 1610 ntAPPRIS ALT2 TSL 1 (best) BASIC16.3■□□□□ 0.2
RFC3P40938 DTX2-206ENST00000430490 2623 ntAPPRIS P3 TSL 1 (best) BASIC16.3■□□□□ 0.2
RFC3P40938 WASF1-202ENST00000359451 3075 ntAPPRIS P1 TSL 1 (best) BASIC16.3■□□□□ 0.2
RFC3P40938 HOXC11-201ENST00000243082 2039 ntTSL 3 BASIC16.29■□□□□ 0.2
RFC3P40938 PRODH-205ENST00000420436 2034 ntAPPRIS ALT2 TSL 2 BASIC16.29■□□□□ 0.2
RFC3P40938 YAP1-208ENST00000531439 1490 ntAPPRIS ALT2 TSL 1 (best) BASIC16.29■□□□□ 0.2
RFC3P40938 COQ9-210ENST00000567072 1482 ntTSL 3 BASIC16.29■□□□□ 0.2
RFC3P40938 HSPB9-201ENST00000565659 1922 ntAPPRIS P1 BASIC16.29■□□□□ 0.2
RFC3P40938 SLC12A4-201ENST00000316341 4765 ntAPPRIS P1 TSL 1 (best) BASIC16.29■□□□□ 0.2
RFC3P40938 CCNJL-203ENST00000393977 3320 ntTSL 1 (best) BASIC16.29■□□□□ 0.2
RFC3P40938 PLCXD1-202ENST00000381663 1863 ntAPPRIS P2 TSL 5 BASIC16.29■□□□□ 0.2
RFC3P40938 CACNB3-202ENST00000536187 1872 ntTSL 2 BASIC16.29■□□□□ 0.2
RFC3P40938 CPSF3-201ENST00000238112 2345 ntAPPRIS P1 TSL 1 (best) BASIC16.29■□□□□ 0.2
RFC3P40938 AC011840.1-202ENST00000436477 1351 ntTSL 2 BASIC16.29■□□□□ 0.2
RFC3P40938 AC005329.3-201ENST00000626781 1366 ntTSL 5 BASIC16.29■□□□□ 0.2
RFC3P40938 AC073592.3-201ENST00000625118 1834 ntBASIC16.29■□□□□ 0.2
RFC3P40938 PLEKHB2-204ENST00000409158 2277 ntTSL 2 BASIC16.29■□□□□ 0.2
RFC3P40938 KRT86-202ENST00000423955 2217 ntAPPRIS P1 TSL 2 BASIC16.29■□□□□ 0.2
RFC3P40938 COA5-201ENST00000328709 1754 ntAPPRIS P1 TSL 1 (best) BASIC16.29■□□□□ 0.2
RFC3P40938 ULK3-201ENST00000440863 2623 ntAPPRIS P3 TSL 2 BASIC16.29■□□□□ 0.2
RFC3P40938 SSSCA1-201ENST00000309328 698 ntAPPRIS P1 TSL 1 (best) BASIC16.29■□□□□ 0.2
RFC3P40938 RAB24-204ENST00000393611 1236 ntAPPRIS P1 TSL 1 (best) BASIC16.29■□□□□ 0.2
RFC3P40938 EXOSC3-202ENST00000396521 768 ntTSL 2 BASIC16.29■□□□□ 0.2
RFC3P40938 AC080075.1-201ENST00000469747 427 ntTSL 2 BASIC16.29■□□□□ 0.2
RFC3P40938 PACRGL-218ENST00000507634 1142 ntTSL 5 BASIC16.29■□□□□ 0.2
RFC3P40938 RAD52-211ENST00000536177 1139 ntAPPRIS ALT2 TSL 2 BASIC16.29■□□□□ 0.2
RFC3P40938 AC009533.2-201ENST00000543664 586 ntBASIC16.29■□□□□ 0.2
RFC3P40938 RPS15A-205ENST00000565420 802 ntAPPRIS P1 TSL 2 BASIC16.29■□□□□ 0.2
RFC3P40938 SHBG-211ENST00000574539 938 ntTSL 1 (best) BASIC16.29■□□□□ 0.2
RFC3P40938 AC011498.3-201ENST00000590159 569 ntTSL 4 BASIC16.29■□□□□ 0.2
RFC3P40938 WDR1-205ENST00000502702 1691 ntTSL 5 BASIC16.29■□□□□ 0.2
RFC3P40938 AL031658.1-201ENST00000449519 2013 ntTSL 2 BASIC16.29■□□□□ 0.2
RFC3P40938 SEPT11-201ENST00000264893 5593 ntAPPRIS P2 TSL 1 (best) BASIC16.29■□□□□ 0.2
RFC3P40938 ETV7-204ENST00000373738 1570 ntTSL 1 (best) BASIC16.29■□□□□ 0.2
RFC3P40938 HSD11B1L-223ENST00000616276 1580 ntAPPRIS ALT2 TSL 5 BASIC16.29■□□□□ 0.2
RFC3P40938 COL5A3-201ENST00000264828 6174 ntAPPRIS P1 TSL 1 (best) BASIC16.29■□□□□ 0.2
RFC3P40938 ACSF2-201ENST00000300441 2235 ntAPPRIS P1 TSL 1 (best) BASIC16.29■□□□□ 0.2
RFC3P40938 ARHGAP8-201ENST00000336963 1487 ntTSL 1 (best) BASIC16.29■□□□□ 0.2
RFC3P40938 PNCK-203ENST00000370145 1455 ntTSL 2 BASIC16.29■□□□□ 0.2
RFC3P40938 AC004832.3-202ENST00000439838 1470 ntAPPRIS P1 TSL 2 BASIC16.29■□□□□ 0.2
RFC3P40938 DHRS7B-206ENST00000579303 1479 ntAPPRIS ALT1 TSL 5 BASIC16.29■□□□□ 0.2
RFC3P40938 ATRIP-201ENST00000320211 2590 ntAPPRIS P1 TSL 1 (best) BASIC16.29■□□□□ 0.2
RFC3P40938 STRA6-209ENST00000563965 2565 ntTSL 1 (best) BASIC16.29■□□□□ 0.2
RFC3P40938 GPANK1-204ENST00000375900 1814 ntAPPRIS P1 TSL 2 BASIC16.29■□□□□ 0.2
RFC3P40938 ALKBH4-201ENST00000292566 2105 ntAPPRIS P1 TSL 1 (best) BASIC16.28■□□□□ 0.2
RFC3P40938 SRRM2-201ENST00000301740 9353 ntAPPRIS P1 TSL 1 (best) BASIC16.28■□□□□ 0.2
RFC3P40938 AC008687.8-201ENST00000599795 1748 ntAPPRIS P1 TSL 2 BASIC16.28■□□□□ 0.2
RFC3P40938 HTD2-206ENST00000481972 1378 ntAPPRIS P1 TSL 2 BASIC16.28■□□□□ 0.2
RFC3P40938 ZCCHC17-205ENST00000615916 1652 ntTSL 1 (best) BASIC16.28■□□□□ 0.2
RFC3P40938 HLA-A-201ENST00000376802 1334 ntBASIC16.28■□□□□ 0.2
RFC3P40938 SP100-208ENST00000427101 1922 ntTSL 2 BASIC16.28■□□□□ 0.2
RFC3P40938 ART5-201ENST00000359918 1241 ntAPPRIS P1 TSL 1 (best) BASIC16.28■□□□□ 0.2
RFC3P40938 GNG5-202ENST00000370645 790 ntAPPRIS P1 TSL 2 BASIC16.28■□□□□ 0.2
RFC3P40938 AL022342.1-201ENST00000400363 863 ntBASIC16.28■□□□□ 0.2
RFC3P40938 C2orf82-202ENST00000409230 663 ntAPPRIS P2 TSL 3 BASIC16.28■□□□□ 0.2
RFC3P40938 AC007834.1-201ENST00000446473 728 ntTSL 3 BASIC16.28■□□□□ 0.2
RFC3P40938 AC008429.1-203ENST00000518894 548 ntTSL 4 BASIC16.28■□□□□ 0.2
RFC3P40938 ORAOV1-210ENST00000539414 817 ntAPPRIS ALT1 TSL 2 BASIC16.28■□□□□ 0.2
RFC3P40938 AL162171.1-201ENST00000556328 718 ntTSL 3 BASIC16.28■□□□□ 0.2
RFC3P40938 COX5A-204ENST00000567270 579 ntTSL 3 BASIC16.28■□□□□ 0.2
RFC3P40938 AP001269.4-201ENST00000609611 512 ntBASIC16.28■□□□□ 0.2
RFC3P40938 AC148477.8-201ENST00000624298 468 ntBASIC16.28■□□□□ 0.2
RFC3P40938 SEPT11-209ENST00000510515 1886 ntTSL 2 BASIC16.28■□□□□ 0.2
RFC3P40938 PIANP-204ENST00000540656 2432 ntAPPRIS P3 TSL 2 BASIC16.28■□□□□ 0.2
RFC3P40938 PTGES-201ENST00000340607 1774 ntAPPRIS P1 TSL 1 (best) BASIC16.28■□□□□ 0.2
RFC3P40938 CD151-203ENST00000397421 1486 ntAPPRIS P2 TSL 1 (best) BASIC16.28■□□□□ 0.2
RFC3P40938 PIP5K1C-205ENST00000589578 2933 ntAPPRIS ALT2 TSL 1 (best) BASIC16.28■□□□□ 0.2
RFC3P40938 CIZ1-226ENST00000629610 2855 ntAPPRIS ALT2 TSL 2 BASIC16.28■□□□□ 0.2
RFC3P40938 PYCR1-217ENST00000629768 1740 ntTSL 5 BASIC16.28■□□□□ 0.2
RFC3P40938 OPA3-202ENST00000323060 2250 ntAPPRIS ALT2 TSL 1 (best) BASIC16.28■□□□□ 0.2
RFC3P40938 CXXC1-202ENST00000412036 2280 ntAPPRIS ALT1 TSL 1 (best) BASIC16.28■□□□□ 0.2
RFC3P40938 RAPGEF5-203ENST00000405243 2800 ntTSL 1 (best) BASIC16.27■□□□□ 0.2
RFC3P40938 ACSM2A-201ENST00000219054 1988 ntAPPRIS P1 TSL 1 (best) BASIC16.27■□□□□ 0.2
RFC3P40938 MFSD2A-203ENST00000420632 1914 ntTSL 2 BASIC16.27■□□□□ 0.2
RFC3P40938 AC106820.2-201ENST00000563775 3264 ntBASIC16.27■□□□□ 0.2
Retrieved 100 of 98,524 protein–RNA pairs in 21 ms