Protein–RNA interactions for Protein: P31645

SLC6A4, Sodium-dependent serotonin transporter, humanhuman

Predictions only

Length 630 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SLC6A4P31645 VAMP5-201ENST00000306384 689 ntAPPRIS P1 TSL 1 (best) BASIC18.27■□□□□ 0.52
SLC6A4P31645 PTRHD1-201ENST00000328379 1105 ntAPPRIS P1 TSL 1 (best) BASIC18.27■□□□□ 0.52
SLC6A4P31645 MAL-203ENST00000353004 873 ntTSL 1 (best) BASIC18.27■□□□□ 0.52
SLC6A4P31645 RWDD3-202ENST00000370202 1235 ntAPPRIS P1 TSL 3 BASIC18.27■□□□□ 0.52
SLC6A4P31645 FDX1P1-201ENST00000449115 551 ntBASIC18.27■□□□□ 0.52
SLC6A4P31645 FGFR3P6-201ENST00000457012 610 ntBASIC18.27■□□□□ 0.52
SLC6A4P31645 AC122714.2-201ENST00000502787 707 ntBASIC18.27■□□□□ 0.52
SLC6A4P31645 AK2-210ENST00000548033 936 ntTSL 1 (best) BASIC18.27■□□□□ 0.52
SLC6A4P31645 SMAD3-210ENST00000559092 584 ntTSL 4 BASIC18.27■□□□□ 0.52
SLC6A4P31645 SPAG7-207ENST00000575142 1094 ntTSL 1 (best) BASIC18.27■□□□□ 0.52
SLC6A4P31645 MNT-208ENST00000575394 606 ntTSL 4 BASIC18.27■□□□□ 0.52
SLC6A4P31645 KLK8-205ENST00000593490 267 ntTSL 3 BASIC18.27■□□□□ 0.52
SLC6A4P31645 AXIN2-208ENST00000611991 1019 ntTSL 5 BASIC18.27■□□□□ 0.52
SLC6A4P31645 AL355877.3-201ENST00000622820 899 ntBASIC18.27■□□□□ 0.52
SLC6A4P31645 C11orf80-203ENST00000525449 1821 ntAPPRIS ALT2 TSL 1 (best) BASIC18.27■□□□□ 0.52
SLC6A4P31645 RELL2-201ENST00000297164 2520 ntAPPRIS P1 TSL 1 (best) BASIC18.27■□□□□ 0.52
SLC6A4P31645 C11orf68-203ENST00000530188 1528 ntAPPRIS ALT2 BASIC18.27■□□□□ 0.51
SLC6A4P31645 ETFBKMT-202ENST00000395763 2055 ntAPPRIS P1 TSL 1 (best) BASIC18.27■□□□□ 0.51
SLC6A4P31645 STK11-201ENST00000326873 2611 ntAPPRIS P2 TSL 1 (best) BASIC18.27■□□□□ 0.51
SLC6A4P31645 TTC19-201ENST00000261647 3002 ntAPPRIS P2 TSL 1 (best) BASIC18.27■□□□□ 0.51
SLC6A4P31645 UBP1-202ENST00000283629 4148 ntAPPRIS P3 TSL 1 (best) BASIC18.27■□□□□ 0.51
SLC6A4P31645 LMNA-207ENST00000368301 2461 ntTSL 2 BASIC18.27■□□□□ 0.51
SLC6A4P31645 SKOR1-204ENST00000554240 3597 ntAPPRIS ALT2 TSL 5 BASIC18.27■□□□□ 0.51
SLC6A4P31645 LINC00461-203ENST00000504246 2300 ntTSL 2 BASIC18.27■□□□□ 0.51
SLC6A4P31645 SIRPAP1-201ENST00000448467 1770 ntBASIC18.27■□□□□ 0.51
SLC6A4P31645 NUTM2D-201ENST00000381697 3290 ntAPPRIS P5 TSL 1 (best) BASIC18.27■□□□□ 0.51
SLC6A4P31645 NOTCH2NL-201ENST00000362074 1874 ntAPPRIS P2 TSL 1 (best) BASIC18.26■□□□□ 0.51
SLC6A4P31645 NKIRAS1-207ENST00000437230 1898 ntAPPRIS ALT1 TSL 5 BASIC18.26■□□□□ 0.51
SLC6A4P31645 MECP2-205ENST00000453960 1729 ntTSL 1 (best) BASIC18.26■□□□□ 0.51
SLC6A4P31645 IL1R1-205ENST00000410023 5143 ntAPPRIS P1 TSL 1 (best) BASIC18.26■□□□□ 0.51
SLC6A4P31645 COLEC11-206ENST00000403096 1557 ntTSL 1 (best) BASIC18.26■□□□□ 0.51
SLC6A4P31645 RNF32-201ENST00000311822 1842 ntTSL 1 (best) BASIC18.26■□□□□ 0.51
SLC6A4P31645 SERPINE2-201ENST00000258405 2195 ntAPPRIS P3 TSL 1 (best) BASIC18.26■□□□□ 0.51
SLC6A4P31645 RABL2A-204ENST00000393167 2179 ntAPPRIS P3 TSL 1 (best) BASIC18.26■□□□□ 0.51
SLC6A4P31645 MBD1-206ENST00000382948 2434 ntAPPRIS P3 TSL 2 BASIC18.26■□□□□ 0.51
SLC6A4P31645 CD9-202ENST00000382515 1229 ntTSL 5 BASIC18.26■□□□□ 0.51
SLC6A4P31645 AL022314.1-201ENST00000414203 464 ntTSL 5 BASIC18.26■□□□□ 0.51
SLC6A4P31645 FAM41C-202ENST00000432963 504 ntTSL 2 BASIC18.26■□□□□ 0.51
SLC6A4P31645 AL133343.2-201ENST00000457213 370 ntTSL 3 BASIC18.26■□□□□ 0.51
SLC6A4P31645 AC021066.1-201ENST00000549788 647 ntTSL 3 BASIC18.26■□□□□ 0.51
SLC6A4P31645 AC092725.1-201ENST00000565783 499 ntTSL 4 BASIC18.26■□□□□ 0.51
SLC6A4P31645 TMEM220-AS1-202ENST00000580899 561 ntTSL 4 BASIC18.26■□□□□ 0.51
SLC6A4P31645 MTDHP3-201ENST00000594186 672 ntBASIC18.26■□□□□ 0.51
SLC6A4P31645 CALM3-211ENST00000598871 561 ntTSL 4 BASIC18.26■□□□□ 0.51
SLC6A4P31645 AC116407.2-201ENST00000613639 860 ntBASIC18.26■□□□□ 0.51
SLC6A4P31645 EIF4E3-201ENST00000295612 2764 ntTSL 1 (best) BASIC18.26■□□□□ 0.51
SLC6A4P31645 TM2D3-201ENST00000333202 1381 ntAPPRIS P4 TSL 1 (best) BASIC18.26■□□□□ 0.51
SLC6A4P31645 CALB2-202ENST00000349553 1373 ntTSL 5 BASIC18.26■□□□□ 0.51
SLC6A4P31645 MCU-201ENST00000357157 2874 ntTSL 1 (best) BASIC18.26■□□□□ 0.51
SLC6A4P31645 CA9-201ENST00000378357 1618 ntAPPRIS P1 TSL 1 (best) BASIC18.26■□□□□ 0.51
SLC6A4P31645 FCER2-202ENST00000360067 1482 ntAPPRIS ALT2 TSL 5 BASIC18.26■□□□□ 0.51
SLC6A4P31645 ARSA-201ENST00000216124 2050 ntAPPRIS P1 TSL 1 (best) BASIC18.26■□□□□ 0.51
SLC6A4P31645 AHCYL1-202ENST00000369799 4015 ntAPPRIS P1 TSL 1 (best) BASIC18.26■□□□□ 0.51
SLC6A4P31645 SLC16A5-203ENST00000538213 1842 ntAPPRIS ALT2 TSL 2 BASIC18.26■□□□□ 0.51
SLC6A4P31645 RIN1-201ENST00000311320 2693 ntAPPRIS P1 TSL 1 (best) BASIC18.26■□□□□ 0.51
SLC6A4P31645 PROK1-201ENST00000271331 1338 ntAPPRIS P1 TSL 1 (best) BASIC18.25■□□□□ 0.51
SLC6A4P31645 CACNG5-202ENST00000533854 1311 ntAPPRIS P1 TSL 2 BASIC18.25■□□□□ 0.51
SLC6A4P31645 AL390961.4-201ENST00000623958 2535 ntBASIC18.25■□□□□ 0.51
SLC6A4P31645 ARHGAP23-222ENST00000622683 5964 ntAPPRIS P2 TSL 5 BASIC18.25■□□□□ 0.51
SLC6A4P31645 PGP-201ENST00000333503 2727 ntAPPRIS P1 TSL 1 (best) BASIC18.25■□□□□ 0.51
SLC6A4P31645 RRN3-205ENST00000563559 2128 ntTSL 5 BASIC18.25■□□□□ 0.51
SLC6A4P31645 TSHZ3-201ENST00000240587 5176 ntAPPRIS P1 TSL 1 (best) BASIC18.25■□□□□ 0.51
SLC6A4P31645 RAI2-201ENST00000331511 2317 ntAPPRIS P1 TSL 2 BASIC18.25■□□□□ 0.51
SLC6A4P31645 A4GALT-203ENST00000401850 2321 ntAPPRIS P1 TSL 1 (best) BASIC18.25■□□□□ 0.51
SLC6A4P31645 RNASEH2A-201ENST00000221486 1165 ntAPPRIS P1 TSL 1 (best) BASIC18.25■□□□□ 0.51
SLC6A4P31645 NXPH2-201ENST00000272641 1052 ntAPPRIS P1 TSL 1 (best) BASIC18.25■□□□□ 0.51
SLC6A4P31645 IGLL1-202ENST00000330377 901 ntAPPRIS P1 TSL 1 (best) BASIC18.25■□□□□ 0.51
SLC6A4P31645 QRFP-201ENST00000343079 411 ntAPPRIS P1 BASIC18.25■□□□□ 0.51
SLC6A4P31645 AL049795.1-201ENST00000373604 642 ntTSL 3 BASIC18.25■□□□□ 0.51
SLC6A4P31645 CREM-211ENST00000374726 1207 ntTSL 1 (best) BASIC18.25■□□□□ 0.51
SLC6A4P31645 MRPL3P1-201ENST00000400109 1033 ntBASIC18.25■□□□□ 0.51
SLC6A4P31645 RBM17P3-201ENST00000417687 1192 ntBASIC18.25■□□□□ 0.51
SLC6A4P31645 AQP12A-202ENST00000429564 1110 ntAPPRIS P5 TSL 5 BASIC18.25■□□□□ 0.51
SLC6A4P31645 AL356056.2-201ENST00000506914 669 ntTSL 4 BASIC18.25■□□□□ 0.51
SLC6A4P31645 ADORA2A-214ENST00000611543 2412 ntAPPRIS P1 TSL 5 BASIC18.25■□□□□ 0.51
SLC6A4P31645 FERMT2-204ENST00000399304 2082 ntTSL 1 (best) BASIC18.25■□□□□ 0.51
SLC6A4P31645 DDX42-216ENST00000583590 4148 ntAPPRIS P1 TSL 5 BASIC18.25■□□□□ 0.51
SLC6A4P31645 RNFT2-209ENST00000622220 2176 ntTSL 5 BASIC18.25■□□□□ 0.51
SLC6A4P31645 HOXA13-201ENST00000222753 5030 ntAPPRIS P1 TSL 1 (best) BASIC18.25■□□□□ 0.51
SLC6A4P31645 ALDH3A1-206ENST00000457500 1925 ntAPPRIS P1 TSL 1 (best) BASIC18.25■□□□□ 0.51
SLC6A4P31645 AC107464.1-203ENST00000468356 2120 ntTSL 1 (best) BASIC18.25■□□□□ 0.51
SLC6A4P31645 RNF2-201ENST00000367509 1677 ntTSL 2 BASIC18.25■□□□□ 0.51
SLC6A4P31645 EWSR1-207ENST00000406548 2207 ntAPPRIS ALT2 TSL 1 (best) BASIC18.25■□□□□ 0.51
SLC6A4P31645 ELP5-214ENST00000574993 2209 ntTSL 1 (best) BASIC18.25■□□□□ 0.51
SLC6A4P31645 SCHIP1-205ENST00000482804 1799 ntTSL 5 BASIC18.25■□□□□ 0.51
SLC6A4P31645 TCP11L2-203ENST00000547153 1788 ntTSL 2 BASIC18.25■□□□□ 0.51
SLC6A4P31645 KXD1-201ENST00000222307 1426 ntAPPRIS P1 TSL 1 (best) BASIC18.24■□□□□ 0.51
SLC6A4P31645 NPTX1-201ENST00000306773 5122 ntAPPRIS P1 TSL 1 (best) BASIC18.24■□□□□ 0.51
SLC6A4P31645 HMGA1-205ENST00000447654 2159 ntAPPRIS P4 TSL 1 (best) BASIC18.24■□□□□ 0.51
SLC6A4P31645 SAMD11-214ENST00000618323 2159 ntTSL 5 BASIC18.24■□□□□ 0.51
SLC6A4P31645 DNAJA3-203ENST00000431375 2294 ntTSL 2 BASIC18.24■□□□□ 0.51
SLC6A4P31645 AL355315.1-201ENST00000370649 1848 ntAPPRIS P1 TSL 2 BASIC18.24■□□□□ 0.51
SLC6A4P31645 PRSS12-201ENST00000296498 4809 ntAPPRIS P1 TSL 1 (best) BASIC18.24■□□□□ 0.51
SLC6A4P31645 ACSS3-201ENST00000261206 2666 ntAPPRIS ALT1 TSL 1 (best) BASIC18.24■□□□□ 0.51
SLC6A4P31645 SMOC1-201ENST00000361956 2040 ntAPPRIS ALT1 TSL 1 (best) BASIC18.24■□□□□ 0.51
SLC6A4P31645 MRPS15-201ENST00000373116 1006 ntAPPRIS P1 TSL 1 (best) BASIC18.24■□□□□ 0.51
SLC6A4P31645 FIGNL1-207ENST00000435566 593 ntTSL 4 BASIC18.24■□□□□ 0.51
SLC6A4P31645 DDX43P3-201ENST00000441064 443 ntBASIC18.24■□□□□ 0.51
SLC6A4P31645 TSTD3-201ENST00000452647 962 ntAPPRIS P2 TSL 2 BASIC18.24■□□□□ 0.51
SLC6A4P31645 LAT-205ENST00000454369 1262 ntAPPRIS ALT2 TSL 5 BASIC18.24■□□□□ 0.51
Retrieved 100 of 98,524 protein–RNA pairs in 30.8 ms