Protein–RNA interactions for Protein: P22415

USF1, Upstream stimulatory factor 1, humanhuman

Predicted RBP Predictions only

Length 310 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
USF1P22415 ARHGAP22-203ENST00000374172 2380 ntTSL 2 BASIC15.11■□□□□ 0.01
USF1P22415 SLC2A11-204ENST00000398356 2388 ntTSL 1 (best) BASIC15.11■□□□□ 0.01
USF1P22415 ATRIP-201ENST00000320211 2590 ntAPPRIS P1 TSL 1 (best) BASIC15.11■□□□□ 0.01
USF1P22415 AC009113.1-201ENST00000570267 2443 ntBASIC15.11■□□□□ 0.01
USF1P22415 MRPS34-201ENST00000177742 1040 ntTSL 1 (best) BASIC15.11■□□□□ 0.01
USF1P22415 TNNC1-201ENST00000232975 714 ntAPPRIS P1 TSL 1 (best) BASIC15.11■□□□□ 0.01
USF1P22415 CCS-201ENST00000310190 942 ntTSL 5 BASIC15.11■□□□□ 0.01
USF1P22415 KLK12-202ENST00000319590 1074 ntAPPRIS ALT2 TSL 5 BASIC15.11■□□□□ 0.01
USF1P22415 INPP5F-203ENST00000369081 874 ntTSL 1 (best) BASIC15.11■□□□□ 0.01
USF1P22415 MRPS18A-201ENST00000372116 785 ntTSL 2 BASIC15.11■□□□□ 0.01
USF1P22415 SYS1-202ENST00000372727 813 ntAPPRIS P1 TSL 3 BASIC15.11■□□□□ 0.01
USF1P22415 CLDN7-202ENST00000397317 1228 ntAPPRIS P1 TSL 1 (best) BASIC15.11■□□□□ 0.01
USF1P22415 AC007952.1-201ENST00000399087 553 ntTSL 1 (best) BASIC15.11■□□□□ 0.01
USF1P22415 AC007952.2-202ENST00000399093 556 ntTSL 1 (best) BASIC15.11■□□□□ 0.01
USF1P22415 HIST2H3DP1-201ENST00000401004 416 ntBASIC15.11■□□□□ 0.01
USF1P22415 RBM14-RBM4-203ENST00000500635 829 ntTSL 2 BASIC15.11■□□□□ 0.01
USF1P22415 SEC23A-206ENST00000553970 574 ntTSL 4 BASIC15.11■□□□□ 0.01
USF1P22415 ATPAF2-213ENST00000585101 566 ntTSL 4 BASIC15.11■□□□□ 0.01
USF1P22415 AL512343.2-201ENST00000609423 490 ntTSL 2 BASIC15.11■□□□□ 0.01
USF1P22415 EML2-AS1-203ENST00000623430 886 ntTSL 1 (best) BASIC15.11■□□□□ 0.01
USF1P22415 AC106017.2-202ENST00000628484 536 ntTSL 1 (best) BASIC15.11■□□□□ 0.01
USF1P22415 ZRSR2-201ENST00000307771 1491 ntAPPRIS P1 TSL 1 (best) BASIC15.11■□□□□ 0.01
USF1P22415 LTB4R2-202ENST00000528054 3092 ntBASIC15.11■□□□□ 0.01
USF1P22415 FAM90A1-201ENST00000307435 2342 ntAPPRIS P1 TSL 2 BASIC15.11■□□□□ 0.01
USF1P22415 CPZ-201ENST00000315782 2136 ntAPPRIS P3 TSL 1 (best) BASIC15.11■□□□□ 0.01
USF1P22415 AD000671.2-201ENST00000589807 1925 ntAPPRIS P1 TSL 2 BASIC15.11■□□□□ 0.01
USF1P22415 PKD1P5-201ENST00000532415 10291 ntBASIC15.11■□□□□ 0.01
USF1P22415 BSG-201ENST00000333511 1974 ntAPPRIS P1 TSL 1 (best) BASIC15.11■□□□□ 0.01
USF1P22415 PCDH7-206ENST00000543491 4457 ntAPPRIS ALT2 BASIC15.11■□□□□ 0.01
USF1P22415 SEC14L2-215ENST00000617837 2632 ntTSL 2 BASIC15.11■□□□□ 0.01
USF1P22415 MAGI3-201ENST00000307546 6430 ntTSL 5 BASIC15.11■□□□□ 0.01
USF1P22415 AC005329.3-201ENST00000626781 1366 ntTSL 5 BASIC15.11■□□□□ 0.01
USF1P22415 IL17RC-215ENST00000455057 2244 ntAPPRIS ALT2 TSL 1 (best) BASIC15.11■□□□□ 0.01
USF1P22415 TCP11-201ENST00000244645 2018 ntAPPRIS P3 TSL 1 (best) BASIC15.1■□□□□ 0.01
USF1P22415 NF2-203ENST00000353887 1845 ntTSL 1 (best) BASIC15.1■□□□□ 0.01
USF1P22415 FGD5-201ENST00000285046 5720 ntAPPRIS P1 TSL 1 (best) BASIC15.1■□□□□ 0.01
USF1P22415 ANKS3-202ENST00000446014 2265 ntTSL 5 BASIC15.1■□□□□ 0.01
USF1P22415 C6orf132-201ENST00000341865 6210 ntAPPRIS P2 TSL 5 BASIC15.1■□□□□ 0.01
USF1P22415 ZNF74-202ENST00000400451 3159 ntAPPRIS P2 TSL 1 (best) BASIC15.1■□□□□ 0.01
USF1P22415 LRRC20-205ENST00000395010 2959 ntTSL 3 BASIC15.1■□□□□ 0.01
USF1P22415 ASIC3-202ENST00000349064 1895 ntAPPRIS P1 TSL 1 (best) BASIC15.1■□□□□ 0.01
USF1P22415 SAMD11-216ENST00000620200 1874 ntTSL 5 BASIC15.1■□□□□ 0.01
USF1P22415 TJP1-212ENST00000614355 6977 ntAPPRIS ALT2 TSL 5 BASIC15.1■□□□□ 0.01
USF1P22415 AC138028.1-201ENST00000333666 2137 ntTSL 2 BASIC15.1■□□□□ 0.01
USF1P22415 PLEKHA2-206ENST00000521746 2127 ntTSL 5 BASIC15.1■□□□□ 0.01
USF1P22415 ABCG4-206ENST00000622721 2553 ntAPPRIS P1 TSL 1 (best) BASIC15.1■□□□□ 0.01
USF1P22415 MINDY2-202ENST00000450403 4820 ntAPPRIS ALT2 TSL 1 (best) BASIC15.1■□□□□ 0.01
USF1P22415 SIL1-202ENST00000394817 1923 ntAPPRIS P1 TSL 1 (best) BASIC15.1■□□□□ 0.01
USF1P22415 DISP3-202ENST00000304391 1495 ntTSL 1 (best) BASIC15.1■□□□□ 0.01
USF1P22415 CACNG7-201ENST00000222212 1016 ntAPPRIS P1 TSL 1 (best) BASIC15.1■□□□□ 0.01
USF1P22415 MCRIP2-201ENST00000307650 946 ntAPPRIS P1 TSL 1 (best) BASIC15.1■□□□□ 0.01
USF1P22415 RPS19BP1-201ENST00000334678 927 ntAPPRIS P1 TSL 1 (best) BASIC15.1■□□□□ 0.01
USF1P22415 GNMT-201ENST00000372808 1072 ntAPPRIS P1 TSL 1 (best) BASIC15.1■□□□□ 0.01
USF1P22415 TTLL12-204ENST00000494035 888 ntTSL 2 BASIC15.1■□□□□ 0.01
USF1P22415 SMN1-203ENST00000503079 1219 ntTSL 5 BASIC15.1■□□□□ 0.01
USF1P22415 AC073648.2-201ENST00000510116 352 ntBASIC15.1■□□□□ 0.01
USF1P22415 RDH5-202ENST00000547072 1054 ntTSL 5 BASIC15.1■□□□□ 0.01
USF1P22415 MAP1LC3B-207ENST00000565788 625 ntTSL 2 BASIC15.1■□□□□ 0.01
USF1P22415 YPEL3-209ENST00000566595 796 ntAPPRIS P1 TSL 2 BASIC15.1■□□□□ 0.01
USF1P22415 MIMT1-202ENST00000599641 1290 ntTSL 1 (best) BASIC15.1■□□□□ 0.01
USF1P22415 LDHAL6A-203ENST00000615355 1042 ntTSL 5 BASIC15.1■□□□□ 0.01
USF1P22415 AL161669.4-201ENST00000634353 732 ntAPPRIS P1 TSL 2 BASIC15.1■□□□□ 0.01
USF1P22415 MAFF-206ENST00000538320 2458 ntAPPRIS P1 TSL 4 BASIC15.1■□□□□ 0.01
USF1P22415 CCNA1-202ENST00000440264 1758 ntAPPRIS P1 TSL 2 BASIC15.1■□□□□ 0.01
USF1P22415 CLN8-211ENST00000636934 1790 ntTSL 5 BASIC15.1■□□□□ 0.01
USF1P22415 AC087457.1-201ENST00000503496 2727 ntTSL 2 BASIC15.1■□□□□ 0.01
USF1P22415 ALDH1A3-201ENST00000329841 3924 ntAPPRIS P1 TSL 1 (best) BASIC15.1■□□□□ 0.01
USF1P22415 IFRD2-204ENST00000436390 2275 ntAPPRIS P1 TSL 2 BASIC15.1■□□□□ 0.01
USF1P22415 LUC7L2-210ENST00000619796 2783 ntTSL 1 (best) BASIC15.1■□□□□ 0.01
USF1P22415 ADAMTS18-201ENST00000282849 5913 ntAPPRIS P1 TSL 1 (best) BASIC15.1■□□□□ 0.01
USF1P22415 THAP3-203ENST00000377627 2053 ntAPPRIS P3 TSL 2 BASIC15.1■□□□□ 0.01
USF1P22415 SLC5A10-203ENST00000395645 2069 ntAPPRIS P1 TSL 1 (best) BASIC15.1■□□□□ 0.01
USF1P22415 AC008764.1-201ENST00000409035 2567 ntAPPRIS P1 TSL 2 BASIC15.1■□□□□ 0.01
USF1P22415 ADORA1-202ENST00000337894 2919 ntAPPRIS P1 TSL 2 BASIC15.1■□□□□ 0.01
USF1P22415 ADGRG2-202ENST00000354791 4494 ntTSL 5 BASIC15.09■□□□□ 0.01
USF1P22415 TYMS-203ENST00000323274 1662 ntAPPRIS P1 TSL 1 (best) BASIC15.09■□□□□ 0.01
USF1P22415 AC112777.1-201ENST00000540175 1423 ntBASIC15.09■□□□□ 0.01
USF1P22415 TMEM206-201ENST00000261455 2475 ntAPPRIS P1 TSL 1 (best) BASIC15.09■□□□□ 0.01
USF1P22415 ALDH5A1-201ENST00000348925 2266 ntAPPRIS P4 TSL 1 (best) BASIC15.09■□□□□ 0.01
USF1P22415 MAN1B1-207ENST00000535144 2296 ntTSL 2 BASIC15.09■□□□□ 0.01
USF1P22415 INO80E-201ENST00000304516 1489 ntTSL 2 BASIC15.09■□□□□ 0.01
USF1P22415 TP73-AS1-210ENST00000637775 1455 ntBASIC15.09■□□□□ 0.01
USF1P22415 MZF1-206ENST00000599369 2587 ntAPPRIS P1 TSL 1 (best) BASIC15.09■□□□□ 0.01
USF1P22415 LZTS2-202ENST00000370223 2883 ntAPPRIS P1 TSL 1 (best) BASIC15.09■□□□□ 0.01
USF1P22415 RPS6KA1-204ENST00000374168 3186 ntAPPRIS P1 TSL 1 (best) BASIC15.09■□□□□ 0.01
USF1P22415 AC104581.1-202ENST00000635932 2618 ntBASIC15.09■□□□□ 0.01
USF1P22415 SAAL1-201ENST00000300013 1518 ntAPPRIS ALT1 TSL 2 BASIC15.09■□□□□ 0.01
USF1P22415 ADGRB2-201ENST00000373655 5400 ntAPPRIS P4 TSL 1 (best) BASIC15.09■□□□□ 0.01
USF1P22415 SLC37A2-203ENST00000403796 2910 ntAPPRIS ALT1 TSL 2 BASIC15.09■□□□□ 0.01
USF1P22415 MTCL1-205ENST00000517570 6009 ntAPPRIS ALT2 TSL 1 (best) BASIC15.09■□□□□ 0.01
USF1P22415 PCDHA7-202ENST00000525929 5221 ntAPPRIS P2 TSL 1 (best) BASIC15.09■□□□□ 0.01
USF1P22415 BOLA1-202ENST00000369152 859 ntAPPRIS P1 TSL 1 (best) BASIC15.09■□□□□ 0.01
USF1P22415 BIRC7-203ENST00000395306 593 ntTSL 2 BASIC15.09■□□□□ 0.01
USF1P22415 RCN1P2-201ENST00000398357 915 ntBASIC15.09■□□□□ 0.01
USF1P22415 MMP24-AS1-201ENST00000424358 867 ntAPPRIS P1 TSL 2 BASIC15.09■□□□□ 0.01
USF1P22415 TM4SF19-TCTEX1D2-201ENST00000442633 964 ntAPPRIS P1 TSL 1 (best) BASIC15.09■□□□□ 0.01
USF1P22415 DANCR-204ENST00000444958 709 ntTSL 3 BASIC15.09■□□□□ 0.01
USF1P22415 MMP24-AS1-209ENST00000456790 712 ntAPPRIS P1 TSL 2 BASIC15.09■□□□□ 0.01
USF1P22415 SCARNA2-201ENST00000458748 420 ntBASIC15.09■□□□□ 0.01
USF1P22415 AC068472.1-201ENST00000474589 881 ntBASIC15.09■□□□□ 0.01
Retrieved 100 of 98,524 protein–RNA pairs in 66.9 ms