Protein–RNA interactions for Protein: P20849

COL9A1, Collagen alpha-1(IX) chain, humanhuman

Predictions only

Length 921 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL9A1P20849 MIR3936HG-202ENST00000457998 733 ntTSL 2 BASIC18.24■□□□□ 0.51
COL9A1P20849 AC106772.1-201ENST00000506629 591 ntTSL 3 BASIC18.24■□□□□ 0.51
COL9A1P20849 LINC02199-203ENST00000510229 496 ntTSL 3 BASIC18.24■□□□□ 0.51
COL9A1P20849 AC024230.1-201ENST00000511431 889 ntTSL 3 BASIC18.24■□□□□ 0.51
COL9A1P20849 FAM8A2P-201ENST00000528813 1142 ntBASIC18.24■□□□□ 0.51
COL9A1P20849 HIST4H4-204ENST00000539745 577 ntAPPRIS P1 BASIC18.24■□□□□ 0.51
COL9A1P20849 MIR4525-201ENST00000580000 75 ntBASIC18.24■□□□□ 0.51
COL9A1P20849 AC006557.2-201ENST00000592985 1240 ntBASIC18.24■□□□□ 0.51
COL9A1P20849 SPNS1-201ENST00000311008 2208 ntAPPRIS P1 TSL 1 (best) BASIC18.24■□□□□ 0.51
COL9A1P20849 MARK3-206ENST00000440884 2643 ntTSL 1 (best) BASIC18.24■□□□□ 0.51
COL9A1P20849 TPCN2-209ENST00000637504 2736 ntTSL 5 BASIC18.24■□□□□ 0.51
COL9A1P20849 CAMKK1-202ENST00000348335 3563 ntAPPRIS P1 TSL 1 (best) BASIC18.24■□□□□ 0.51
COL9A1P20849 PPA2-202ENST00000348706 1414 ntTSL 1 (best) BASIC18.23■□□□□ 0.51
COL9A1P20849 ATP6V0E1-203ENST00000519374 1433 ntAPPRIS P1 TSL 1 (best) BASIC18.23■□□□□ 0.51
COL9A1P20849 CYBA-210ENST00000569359 1415 ntTSL 1 (best) BASIC18.23■□□□□ 0.51
COL9A1P20849 MSL1-206ENST00000579565 1401 ntAPPRIS P1 TSL 1 (best) BASIC18.23■□□□□ 0.51
COL9A1P20849 ABI3-202ENST00000419580 1718 ntAPPRIS P1 TSL 5 BASIC18.23■□□□□ 0.51
COL9A1P20849 SHF-201ENST00000290894 2500 ntAPPRIS P3 TSL 2 BASIC18.23■□□□□ 0.51
COL9A1P20849 VAV1-210ENST00000602142 2620 ntAPPRIS P1 TSL 1 (best) BASIC18.23■□□□□ 0.51
COL9A1P20849 KCNMB4-201ENST00000258111 4731 ntAPPRIS P1 TSL 1 (best) BASIC18.23■□□□□ 0.51
COL9A1P20849 PLA2G7-201ENST00000274793 1882 ntAPPRIS P1 TSL 1 (best) BASIC18.23■□□□□ 0.51
COL9A1P20849 C21orf59-201ENST00000290155 1692 ntAPPRIS P1 TSL 1 (best) BASIC18.23■□□□□ 0.51
COL9A1P20849 ABCB8-211ENST00000477092 1596 ntTSL 5 BASIC18.23■□□□□ 0.51
COL9A1P20849 ZAR1L-202ENST00000533490 1564 ntAPPRIS P1 TSL 5 BASIC18.23■□□□□ 0.51
COL9A1P20849 TMED3-201ENST00000299705 1475 ntAPPRIS P1 TSL 1 (best) BASIC18.23■□□□□ 0.51
COL9A1P20849 C22orf39-201ENST00000333059 1221 ntAPPRIS P1 TSL 1 (best) BASIC18.23■□□□□ 0.51
COL9A1P20849 LINC01116-202ENST00000339037 838 ntTSL 3 BASIC18.23■□□□□ 0.51
COL9A1P20849 AC073621.1-201ENST00000392730 636 ntBASIC18.23■□□□□ 0.51
COL9A1P20849 AC139149.1-202ENST00000442532 783 ntTSL 3 BASIC18.23■□□□□ 0.51
COL9A1P20849 AC136604.3-201ENST00000508188 429 ntTSL 3 BASIC18.23■□□□□ 0.51
COL9A1P20849 GATB-205ENST00000508611 605 ntTSL 2 BASIC18.23■□□□□ 0.51
COL9A1P20849 AC136632.2-201ENST00000512891 861 ntBASIC18.23■□□□□ 0.51
COL9A1P20849 JPH4-203ENST00000544177 1124 ntTSL 2 BASIC18.23■□□□□ 0.51
COL9A1P20849 TBC1D16-205ENST00000572862 1141 ntTSL 1 (best) BASIC18.23■□□□□ 0.51
COL9A1P20849 MIR4751-201ENST00000578027 74 ntBASIC18.23■□□□□ 0.51
COL9A1P20849 CITED2-204ENST00000618718 901 ntTSL 2 BASIC18.23■□□□□ 0.51
COL9A1P20849 TCTN1-223ENST00000550703 2149 ntTSL 2 BASIC18.23■□□□□ 0.51
COL9A1P20849 B4GALT5-201ENST00000371711 4722 ntAPPRIS P1 TSL 1 (best) BASIC18.23■□□□□ 0.51
COL9A1P20849 C19orf25-203ENST00000585675 1837 ntAPPRIS P1 TSL 1 (best) BASIC18.23■□□□□ 0.51
COL9A1P20849 TPCN2-208ENST00000637342 2856 ntTSL 5 BASIC18.23■□□□□ 0.51
COL9A1P20849 DPP10-203ENST00000393147 2758 ntAPPRIS ALT2 TSL 1 (best) BASIC18.23■□□□□ 0.51
COL9A1P20849 UHRF1-203ENST00000615884 2651 ntAPPRIS P1 TSL 2 BASIC18.23■□□□□ 0.51
COL9A1P20849 LUC7L-221ENST00000629543 1520 ntTSL 5 BASIC18.23■□□□□ 0.51
COL9A1P20849 KLHL11-201ENST00000319121 2383 ntAPPRIS P1 TSL 1 (best) BASIC18.23■□□□□ 0.51
COL9A1P20849 ADAP1-216ENST00000539900 2178 ntTSL 2 BASIC18.23■□□□□ 0.51
COL9A1P20849 NMRK1-203ENST00000376811 2050 ntTSL 2 BASIC18.22■□□□□ 0.51
COL9A1P20849 ZNF768-202ENST00000562803 1999 ntAPPRIS ALT2 TSL 3 BASIC18.22■□□□□ 0.51
COL9A1P20849 GSDMD-201ENST00000262580 1762 ntAPPRIS P2 TSL 1 (best) BASIC18.22■□□□□ 0.51
COL9A1P20849 TEPSIN-213ENST00000637944 1782 ntAPPRIS ALT2 TSL 5 BASIC18.22■□□□□ 0.51
COL9A1P20849 FXYD6-211ENST00000539526 2132 ntAPPRIS P2 TSL 1 (best) BASIC18.22■□□□□ 0.51
COL9A1P20849 ZDHHC3-205ENST00000424952 2687 ntAPPRIS P1 TSL 1 (best) BASIC18.22■□□□□ 0.51
COL9A1P20849 SHOX2-203ENST00000441443 3038 ntAPPRIS ALT2 TSL 5 BASIC18.22■□□□□ 0.51
COL9A1P20849 WDR45-240ENST00000635003 1376 ntTSL 3 BASIC18.22■□□□□ 0.51
COL9A1P20849 GDPD1-201ENST00000284116 1821 ntAPPRIS P1 TSL 1 (best) BASIC18.22■□□□□ 0.51
COL9A1P20849 UXT-202ENST00000335890 701 ntTSL 1 (best) BASIC18.22■□□□□ 0.51
COL9A1P20849 LCE3E-201ENST00000368789 611 ntAPPRIS P1 TSL 1 (best) BASIC18.22■□□□□ 0.51
COL9A1P20849 TSSC4-202ENST00000380992 992 ntAPPRIS ALT2 TSL 5 BASIC18.22■□□□□ 0.51
COL9A1P20849 ELK2AP-201ENST00000392510 1007 ntBASIC18.22■□□□□ 0.51
COL9A1P20849 COLEC11-207ENST00000404205 1062 ntTSL 1 (best) BASIC18.22■□□□□ 0.51
COL9A1P20849 LINC01806-201ENST00000436506 765 ntTSL 2 BASIC18.22■□□□□ 0.51
COL9A1P20849 AC068898.1-201ENST00000440750 335 ntTSL 3 BASIC18.22■□□□□ 0.51
COL9A1P20849 VN2R19P-201ENST00000442399 1052 ntBASIC18.22■□□□□ 0.51
COL9A1P20849 AL354710.2-201ENST00000468244 550 ntTSL 4 BASIC18.22■□□□□ 0.51
COL9A1P20849 AKR1A1-204ENST00000471651 1018 ntTSL 1 (best) BASIC18.22■□□□□ 0.51
COL9A1P20849 LINC00595-207ENST00000476909 792 ntTSL 2 BASIC18.22■□□□□ 0.51
COL9A1P20849 MTHFSD-203ENST00000543303 1207 ntAPPRIS ALT2 TSL 1 (best) BASIC18.22■□□□□ 0.51
COL9A1P20849 SPDYE22P-201ENST00000582158 798 ntBASIC18.22■□□□□ 0.51
COL9A1P20849 AC011467.2-201ENST00000598425 242 ntBASIC18.22■□□□□ 0.51
COL9A1P20849 SATB1-AS1-227ENST00000625533 743 ntTSL 5 BASIC18.22■□□□□ 0.51
COL9A1P20849 MTHFSD-220ENST00000634347 1207 ntAPPRIS P3 TSL 1 (best) BASIC18.22■□□□□ 0.51
COL9A1P20849 BIN2-210ENST00000615107 2255 ntAPPRIS P1 TSL 1 (best) BASIC18.22■□□□□ 0.51
COL9A1P20849 IDH3G-202ENST00000370092 1712 ntTSL 5 BASIC18.22■□□□□ 0.51
COL9A1P20849 ARFRP1-208ENST00000612256 2974 ntTSL 1 (best) BASIC18.22■□□□□ 0.51
COL9A1P20849 GMPPA-202ENST00000341142 1524 ntAPPRIS P1 TSL 5 BASIC18.22■□□□□ 0.51
COL9A1P20849 C18orf25-204ENST00000615553 2329 ntTSL 5 BASIC18.22■□□□□ 0.51
COL9A1P20849 MAP7D1-201ENST00000316156 3456 ntAPPRIS ALT2 TSL 1 (best) BASIC18.22■□□□□ 0.51
COL9A1P20849 MDM2-209ENST00000393412 1404 ntTSL 5 BASIC18.22■□□□□ 0.51
COL9A1P20849 ZNF787-202ENST00000587279 1657 ntTSL 2 BASIC18.22■□□□□ 0.51
COL9A1P20849 ZNF324B-202ENST00000545523 2368 ntAPPRIS P1 TSL 1 (best) BASIC18.22■□□□□ 0.51
COL9A1P20849 SMARCD2-203ENST00000448276 2716 ntAPPRIS P1 TSL 1 (best) BASIC18.22■□□□□ 0.51
COL9A1P20849 FBXO24-201ENST00000241071 2276 ntAPPRIS P1 TSL 1 (best) BASIC18.21■□□□□ 0.51
COL9A1P20849 YAP1-208ENST00000531439 1490 ntAPPRIS ALT2 TSL 1 (best) BASIC18.21■□□□□ 0.51
COL9A1P20849 AZI2-205ENST00000420543 1366 ntTSL 3 BASIC18.21■□□□□ 0.51
COL9A1P20849 TUBA4B-203ENST00000490341 1380 ntAPPRIS P1 TSL 2 BASIC18.21■□□□□ 0.51
COL9A1P20849 SCLT1-204ENST00000503215 1364 ntAPPRIS ALT2 TSL 1 (best) BASIC18.21■□□□□ 0.51
COL9A1P20849 CTD-2194D22.4-201ENST00000514569 1635 ntTSL 1 (best) BASIC18.21■□□□□ 0.51
COL9A1P20849 HCG4-201ENST00000418983 998 ntBASIC18.21■□□□□ 0.51
COL9A1P20849 NAGK-205ENST00000443938 1221 ntAPPRIS ALT1 TSL 5 BASIC18.21■□□□□ 0.51
COL9A1P20849 HCG4B-203ENST00000450128 991 ntBASIC18.21■□□□□ 0.51
COL9A1P20849 FAM25G-201ENST00000452267 345 ntAPPRIS P1 TSL 1 (best) BASIC18.21■□□□□ 0.51
COL9A1P20849 PPP1R14B-203ENST00000542235 920 ntTSL 1 (best) BASIC18.21■□□□□ 0.51
COL9A1P20849 VASH1-204ENST00000554743 1096 ntTSL 3 BASIC18.21■□□□□ 0.51
COL9A1P20849 AL353135.1-201ENST00000606729 504 ntBASIC18.21■□□□□ 0.51
COL9A1P20849 Six3os1_5.1-201ENST00000611000 271 ntBASIC18.21■□□□□ 0.51
COL9A1P20849 SLC22A1-201ENST00000324965 1521 ntTSL 5 BASIC18.21■□□□□ 0.51
COL9A1P20849 AC126755.2-202ENST00000427999 1547 ntAPPRIS P1 TSL 1 (best) BASIC18.21■□□□□ 0.51
COL9A1P20849 SEPT9-246ENST00000592951 1793 ntAPPRIS ALT2 TSL 2 BASIC18.21■□□□□ 0.51
COL9A1P20849 WNT7B-202ENST00000409496 2285 ntAPPRIS ALT1 TSL 2 BASIC18.21■□□□□ 0.51
COL9A1P20849 OGFOD2-211ENST00000538628 1696 ntTSL 1 (best) BASIC18.21■□□□□ 0.51
COL9A1P20849 REEP2-201ENST00000254901 2099 ntAPPRIS P3 TSL 1 (best) BASIC18.21■□□□□ 0.51
Retrieved 100 of 98,524 protein–RNA pairs in 49.7 ms