Protein–RNA interactions for Protein: P20585

MSH3, DNA mismatch repair protein Msh3, humanhuman

Predictions only

Length 1,137 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
MSH3P20585 GABRB1-201ENST00000295454 2143 ntAPPRIS P1 TSL 1 (best) BASIC17.75■□□□□ 0.43
MSH3P20585 PYCR1-217ENST00000629768 1740 ntTSL 5 BASIC17.75■□□□□ 0.43
MSH3P20585 APP-203ENST00000354192 3167 ntTSL 1 (best) BASIC17.75■□□□□ 0.43
MSH3P20585 SLC22A4-201ENST00000200652 2201 ntAPPRIS P1 TSL 1 (best) BASIC17.75■□□□□ 0.43
MSH3P20585 PHKA1-201ENST00000339490 6121 ntAPPRIS ALT1 TSL 1 (best) BASIC17.75■□□□□ 0.43
MSH3P20585 MACF1-233ENST00000602421 1423 ntTSL 2 BASIC17.75■□□□□ 0.43
MSH3P20585 POM121C-208ENST00000615331 5835 ntAPPRIS P2 TSL 1 (best) BASIC17.75■□□□□ 0.43
MSH3P20585 TBC1D10C-209ENST00000542590 1659 ntAPPRIS P1 TSL 1 (best) BASIC17.75■□□□□ 0.43
MSH3P20585 PRELID3A-203ENST00000587735 1694 ntTSL 1 (best) BASIC17.75■□□□□ 0.43
MSH3P20585 AJUBA-202ENST00000361265 2569 ntAPPRIS P1 TSL 1 (best) BASIC17.75■□□□□ 0.43
MSH3P20585 ASPM-201ENST00000294732 6132 ntTSL 1 (best) BASIC17.75■□□□□ 0.43
MSH3P20585 SSR4P1-202ENST00000429427 967 ntTSL 5 BASIC17.75■□□□□ 0.43
MSH3P20585 PCAT7-201ENST00000452148 1164 ntTSL 2 BASIC17.75■□□□□ 0.43
MSH3P20585 VENTXP7-201ENST00000475503 772 ntBASIC17.75■□□□□ 0.43
MSH3P20585 AC138207.7-201ENST00000584499 668 ntTSL 5 BASIC17.75■□□□□ 0.43
MSH3P20585 AC104971.2-201ENST00000588144 1209 ntTSL 2 BASIC17.75■□□□□ 0.43
MSH3P20585 RTBDN-213ENST00000592204 1024 ntAPPRIS ALT2 TSL 1 (best) BASIC17.75■□□□□ 0.43
MSH3P20585 IGSF9-206ENST00000611023 2663 ntTSL 1 (best) BASIC17.75■□□□□ 0.43
MSH3P20585 LBHD1-210ENST00000532208 1508 ntAPPRIS P2 TSL 5 BASIC17.75■□□□□ 0.43
MSH3P20585 FAM9A-202ENST00000543214 1544 ntAPPRIS P1 TSL 1 (best) BASIC17.75■□□□□ 0.43
MSH3P20585 ZNF74-201ENST00000357502 2788 ntTSL 1 (best) BASIC17.75■□□□□ 0.43
MSH3P20585 RHOB-201ENST00000272233 2372 ntAPPRIS P1 BASIC17.75■□□□□ 0.43
MSH3P20585 IL17RC-201ENST00000295981 2621 ntAPPRIS P4 TSL 2 BASIC17.75■□□□□ 0.43
MSH3P20585 GNAS-203ENST00000306120 1878 ntBASIC17.75■□□□□ 0.43
MSH3P20585 KCNK7-204ENST00000394217 1372 ntTSL 1 (best) BASIC17.75■□□□□ 0.43
MSH3P20585 HSPA4-205ENST00000617074 2358 ntTSL 5 BASIC17.75■□□□□ 0.43
MSH3P20585 SLC22A11-202ENST00000377581 1975 ntTSL 5 BASIC17.75■□□□□ 0.43
MSH3P20585 AZU1-202ENST00000592205 1713 ntTSL 2 BASIC17.75■□□□□ 0.43
MSH3P20585 LTB4R2-202ENST00000528054 3092 ntBASIC17.75■□□□□ 0.43
MSH3P20585 LRRC29-201ENST00000393992 1468 ntAPPRIS P1 TSL 1 (best) BASIC17.75■□□□□ 0.43
MSH3P20585 LINC00574-201ENST00000420557 2318 ntTSL 2 BASIC17.75■□□□□ 0.43
MSH3P20585 DUS1L-201ENST00000306796 2068 ntAPPRIS P1 TSL 1 (best) BASIC17.75■□□□□ 0.43
MSH3P20585 BEGAIN-211ENST00000637646 2911 ntTSL 5 BASIC17.75■□□□□ 0.43
MSH3P20585 RNPS1-205ENST00000561718 1806 ntTSL 3 BASIC17.75■□□□□ 0.43
MSH3P20585 PCDH7-201ENST00000361762 6403 ntAPPRIS P3 TSL 1 (best) BASIC17.74■□□□□ 0.43
MSH3P20585 IRF7-207ENST00000525445 1588 ntTSL 5 BASIC17.74■□□□□ 0.43
MSH3P20585 SHBG-201ENST00000340624 1311 ntTSL 1 (best) BASIC17.74■□□□□ 0.43
MSH3P20585 PXK-206ENST00000463280 2825 ntTSL 2 BASIC17.74■□□□□ 0.43
MSH3P20585 RAI2-201ENST00000331511 2317 ntAPPRIS P1 TSL 2 BASIC17.74■□□□□ 0.43
MSH3P20585 BTNL9-202ENST00000376841 1626 ntTSL 1 (best) BASIC17.74■□□□□ 0.43
MSH3P20585 TMEM171-201ENST00000287773 1247 ntAPPRIS ALT1 TSL 5 BASIC17.74■□□□□ 0.43
MSH3P20585 MED30-201ENST00000297347 985 ntAPPRIS P1 TSL 1 (best) BASIC17.74■□□□□ 0.43
MSH3P20585 MOS-201ENST00000311923 1041 ntAPPRIS P1 BASIC17.74■□□□□ 0.43
MSH3P20585 AC115618.1-201ENST00000376775 549 ntTSL 3 BASIC17.74■□□□□ 0.43
MSH3P20585 INSL3-202ENST00000379695 899 ntTSL 1 (best) BASIC17.74■□□□□ 0.43
MSH3P20585 SPEG-204ENST00000396689 1274 ntTSL 1 (best) BASIC17.74■□□□□ 0.43
MSH3P20585 ATP5J-203ENST00000400090 647 ntAPPRIS P1 TSL 2 BASIC17.74■□□□□ 0.43
MSH3P20585 AC010655.4-201ENST00000462662 707 ntTSL 4 BASIC17.74■□□□□ 0.43
MSH3P20585 MTG1-205ENST00000477902 1283 ntTSL 3 BASIC17.74■□□□□ 0.43
MSH3P20585 AC113382.1-201ENST00000500267 1253 ntTSL 1 (best) BASIC17.74■□□□□ 0.43
MSH3P20585 FAM53C-211ENST00000513056 923 ntTSL 1 (best) BASIC17.74■□□□□ 0.43
MSH3P20585 ANAPC11-204ENST00000571024 668 ntAPPRIS P1 TSL 1 (best) BASIC17.74■□□□□ 0.43
MSH3P20585 ANAPC11-217ENST00000579978 575 ntAPPRIS P1 TSL 2 BASIC17.74■□□□□ 0.43
MSH3P20585 ANAPC11-218ENST00000582222 523 ntTSL 2 BASIC17.74■□□□□ 0.43
MSH3P20585 IL11-204ENST00000590625 1028 ntTSL 2 BASIC17.74■□□□□ 0.43
MSH3P20585 ADGRB2-201ENST00000373655 5400 ntAPPRIS P4 TSL 1 (best) BASIC17.74■□□□□ 0.43
MSH3P20585 SPTBN4-212ENST00000598249 8070 ntAPPRIS P2 TSL 1 (best) BASIC17.74■□□□□ 0.43
MSH3P20585 MAP6-201ENST00000304771 3334 ntAPPRIS P3 TSL 1 (best) BASIC17.74■□□□□ 0.43
MSH3P20585 FDXR-202ENST00000413947 1809 ntTSL 2 BASIC17.74■□□□□ 0.43
MSH3P20585 CXXC1-202ENST00000412036 2280 ntAPPRIS ALT1 TSL 1 (best) BASIC17.74■□□□□ 0.43
MSH3P20585 GALNT14-202ENST00000349752 2733 ntAPPRIS P1 TSL 1 (best) BASIC17.74■□□□□ 0.43
MSH3P20585 UBE2D2-202ENST00000398733 2702 ntAPPRIS P2 TSL 1 (best) BASIC17.74■□□□□ 0.43
MSH3P20585 CSK-202ENST00000439220 1900 ntAPPRIS P1 TSL 2 BASIC17.74■□□□□ 0.43
MSH3P20585 ENPP1-201ENST00000360971 7442 ntAPPRIS P1 TSL 1 (best) BASIC17.74■□□□□ 0.43
MSH3P20585 FCGRT-202ENST00000426395 1559 ntAPPRIS P1 TSL 1 (best) BASIC17.74■□□□□ 0.43
MSH3P20585 MST1R-214ENST00000613534 2025 ntTSL 1 (best) BASIC17.74■□□□□ 0.43
MSH3P20585 RUVBL1-202ENST00000464873 2126 ntTSL 2 BASIC17.74■□□□□ 0.43
MSH3P20585 XKR8-201ENST00000373884 2692 ntAPPRIS P1 TSL 1 (best) BASIC17.74■□□□□ 0.43
MSH3P20585 MARVELD3-202ENST00000299952 2214 ntAPPRIS ALT2 TSL 2 BASIC17.74■□□□□ 0.43
MSH3P20585 ZNF133-211ENST00000538547 2245 ntTSL 2 BASIC17.74■□□□□ 0.43
MSH3P20585 CYP4F8-210ENST00000612078 1889 ntAPPRIS P1 TSL 1 (best) BASIC17.73■□□□□ 0.43
MSH3P20585 KMT2E-207ENST00000476671 2523 ntTSL 1 (best) BASIC17.73■□□□□ 0.43
MSH3P20585 UNKL-202ENST00000301712 1431 ntTSL 1 (best) BASIC17.73■□□□□ 0.43
MSH3P20585 VGLL4-210ENST00000426568 1428 ntTSL 1 (best) BASIC17.73■□□□□ 0.43
MSH3P20585 TMEM82-201ENST00000375782 1520 ntAPPRIS P1 TSL 1 (best) BASIC17.73■□□□□ 0.43
MSH3P20585 AC002310.5-201ENST00000569360 1515 ntAPPRIS P1 TSL 2 BASIC17.73■□□□□ 0.43
MSH3P20585 MAFK-201ENST00000343242 3368 ntAPPRIS P1 TSL 1 (best) BASIC17.73■□□□□ 0.43
MSH3P20585 PLA2G12A-201ENST00000243501 5226 ntAPPRIS P2 TSL 1 (best) BASIC17.73■□□□□ 0.43
MSH3P20585 PHRF1-202ENST00000413872 5224 ntAPPRIS ALT2 TSL 1 (best) BASIC17.73■□□□□ 0.43
MSH3P20585 NEURL1B-201ENST00000369800 6424 ntAPPRIS P1 TSL 1 (best) BASIC17.73■□□□□ 0.43
MSH3P20585 MSC-201ENST00000325509 2023 ntAPPRIS P1 TSL 1 (best) BASIC17.73■□□□□ 0.43
MSH3P20585 STRA8-201ENST00000275764 993 ntAPPRIS P1 TSL 1 (best) BASIC17.73■□□□□ 0.43
MSH3P20585 BOLA2B-201ENST00000305321 1012 ntAPPRIS P1 TSL 1 (best) BASIC17.73■□□□□ 0.43
MSH3P20585 DAG1-201ENST00000308775 5522 ntAPPRIS P1 TSL 1 (best) BASIC17.73■□□□□ 0.43
MSH3P20585 BOLA2-201ENST00000330978 1012 ntAPPRIS P1 TSL 1 (best) BASIC17.73■□□□□ 0.43
MSH3P20585 INPP5F-203ENST00000369081 874 ntTSL 1 (best) BASIC17.73■□□□□ 0.43
MSH3P20585 C1QC-203ENST00000374640 1163 ntAPPRIS P1 TSL 1 (best) BASIC17.73■□□□□ 0.43
MSH3P20585 ATP5G2P1-201ENST00000433580 426 ntBASIC17.73■□□□□ 0.43
MSH3P20585 AP002383.4-201ENST00000442518 975 ntBASIC17.73■□□□□ 0.43
MSH3P20585 ZNF655-218ENST00000454654 571 ntTSL 4 BASIC17.73■□□□□ 0.43
MSH3P20585 LAMTOR4-205ENST00000468582 621 ntTSL 2 BASIC17.73■□□□□ 0.43
MSH3P20585 AC106771.1-201ENST00000502209 372 ntTSL 2 BASIC17.73■□□□□ 0.43
MSH3P20585 ANKRD29-202ENST00000585908 846 ntTSL 2 BASIC17.73■□□□□ 0.43
MSH3P20585 AC092329.2-201ENST00000598402 547 ntBASIC17.73■□□□□ 0.43
MSH3P20585 HNF4A-208ENST00000609795 1192 ntTSL 1 (best) BASIC17.73■□□□□ 0.43
MSH3P20585 AC092119.3-201ENST00000612618 583 ntBASIC17.73■□□□□ 0.43
MSH3P20585 CSF3-206ENST00000577675 1360 ntTSL 1 (best) BASIC17.73■□□□□ 0.43
MSH3P20585 CD276-203ENST00000537340 2439 ntTSL 2 BASIC17.73■□□□□ 0.43
MSH3P20585 RELL2-201ENST00000297164 2520 ntAPPRIS P1 TSL 1 (best) BASIC17.73■□□□□ 0.43
MSH3P20585 DLK2-203ENST00000372488 1590 ntAPPRIS P3 TSL 1 (best) BASIC17.73■□□□□ 0.43
Retrieved 100 of 98,524 protein–RNA pairs in 24.6 ms