Protein–RNA interactions for Protein: P12107

COL11A1, Collagen alpha-1(XI) chain, humanhuman

Predicted RBP Predictions only

Length 1,806 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL11A1P12107 LINC00683-201ENST00000578803 2221 ntTSL 2 BASIC20.11■□□□□ 0.81
COL11A1P12107 HSPB8-201ENST00000281938 2152 ntAPPRIS P1 TSL 1 (best) BASIC20.11■□□□□ 0.81
COL11A1P12107 LCA10-201ENST00000618311 1392 ntTSL 2 BASIC20.11■□□□□ 0.81
COL11A1P12107 PRRG3-205ENST00000538575 1303 ntAPPRIS P1 TSL 5 BASIC20.11■□□□□ 0.81
COL11A1P12107 BICD1-205ENST00000550207 1328 ntTSL 3 BASIC20.11■□□□□ 0.81
COL11A1P12107 DFNA5-203ENST00000409970 2005 ntTSL 5 BASIC20.11■□□□□ 0.81
COL11A1P12107 FGFBP2-201ENST00000259989 1168 ntAPPRIS P1 TSL 1 (best) BASIC20.11■□□□□ 0.81
COL11A1P12107 CGREF1-201ENST00000260595 1177 ntAPPRIS ALT2 TSL 5 BASIC20.11■□□□□ 0.81
COL11A1P12107 SNHG17-206ENST00000436764 973 ntTSL 5 BASIC20.11■□□□□ 0.81
COL11A1P12107 FTCD-AS1-201ENST00000446649 500 ntTSL 2 BASIC20.11■□□□□ 0.81
COL11A1P12107 AC005593.1-201ENST00000624894 515 ntBASIC20.11■□□□□ 0.81
COL11A1P12107 TTLL10-203ENST00000379290 2283 ntAPPRIS P1 TSL 1 (best) BASIC20.11■□□□□ 0.81
COL11A1P12107 CD14-201ENST00000302014 1886 ntAPPRIS P1 TSL 1 (best) BASIC20.1■□□□□ 0.81
COL11A1P12107 GPER1-204ENST00000401670 1542 ntAPPRIS P1 TSL 2 BASIC20.1■□□□□ 0.81
COL11A1P12107 KMT5B-206ENST00000405515 2869 ntTSL 5 BASIC20.1■□□□□ 0.81
COL11A1P12107 RABL2A-204ENST00000393167 2179 ntAPPRIS P3 TSL 1 (best) BASIC20.1■□□□□ 0.81
COL11A1P12107 PSRC1-205ENST00000409138 1826 ntTSL 2 BASIC20.1■□□□□ 0.81
COL11A1P12107 CACNG8-201ENST00000270458 8747 ntAPPRIS ALT2 TSL 1 (best) BASIC20.1■□□□□ 0.81
COL11A1P12107 DDX19B-207ENST00000563206 1765 ntTSL 5 BASIC20.1■□□□□ 0.81
COL11A1P12107 KDELC1-201ENST00000376004 2060 ntAPPRIS P1 TSL 1 (best) BASIC20.1■□□□□ 0.81
COL11A1P12107 KRT85-202ENST00000544265 1387 ntTSL 2 BASIC20.1■□□□□ 0.81
COL11A1P12107 TREX2-201ENST00000330912 2262 ntAPPRIS P1 TSL 1 (best) BASIC20.1■□□□□ 0.81
COL11A1P12107 ITPKB-202ENST00000366784 3146 ntTSL 1 (best) BASIC20.1■□□□□ 0.81
COL11A1P12107 CCNJ-202ENST00000403870 2830 ntTSL 5 BASIC20.1■□□□□ 0.81
COL11A1P12107 ATP6AP2-214ENST00000636287 1904 ntAPPRIS ALT2 TSL 5 BASIC20.1■□□□□ 0.81
COL11A1P12107 SLC38A11-202ENST00000409058 1647 ntAPPRIS ALT2 TSL 5 BASIC20.1■□□□□ 0.81
COL11A1P12107 CAPN1-226ENST00000533820 3083 ntAPPRIS P1 TSL 1 (best) BASIC20.1■□□□□ 0.81
COL11A1P12107 ALDH2-202ENST00000416293 1572 ntTSL 2 BASIC20.1■□□□□ 0.81
COL11A1P12107 LMLN-204ENST00000420910 2423 ntAPPRIS P2 TSL 1 (best) BASIC20.1■□□□□ 0.81
COL11A1P12107 SGF29-201ENST00000317058 1153 ntAPPRIS P1 TSL 1 (best) BASIC20.1■□□□□ 0.81
COL11A1P12107 AC211486.1-202ENST00000416371 468 ntBASIC20.1■□□□□ 0.81
COL11A1P12107 LINC00237-202ENST00000455890 1220 ntTSL 2 BASIC20.1■□□□□ 0.81
COL11A1P12107 AC211476.1-201ENST00000503899 468 ntBASIC20.1■□□□□ 0.81
COL11A1P12107 MVB12A-211ENST00000529939 1091 ntTSL 3 BASIC20.1■□□□□ 0.81
COL11A1P12107 COX5A-206ENST00000568783 571 ntTSL 3 BASIC20.1■□□□□ 0.81
COL11A1P12107 MTDHP5-201ENST00000598980 586 ntBASIC20.1■□□□□ 0.81
COL11A1P12107 PSMA1-209ENST00000530457 1527 ntTSL 5 BASIC20.1■□□□□ 0.81
COL11A1P12107 CLN8-211ENST00000636934 1790 ntTSL 5 BASIC20.1■□□□□ 0.81
COL11A1P12107 RPN2-201ENST00000237530 2515 ntAPPRIS P1 TSL 1 (best) BASIC20.1■□□□□ 0.81
COL11A1P12107 KRT6C-201ENST00000252250 2289 ntAPPRIS P1 TSL 1 (best) BASIC20.09■□□□□ 0.81
COL11A1P12107 KRT6B-201ENST00000252252 2282 ntAPPRIS P1 TSL 1 (best) BASIC20.09■□□□□ 0.81
COL11A1P12107 CLEC18A-202ENST00000393701 1955 ntAPPRIS P2 TSL 1 (best) BASIC20.09■□□□□ 0.81
COL11A1P12107 CLEC18C-203ENST00000541793 1955 ntAPPRIS P2 TSL 1 (best) BASIC20.09■□□□□ 0.81
COL11A1P12107 AFDN-201ENST00000344191 5249 ntTSL 5 BASIC20.09■□□□□ 0.81
COL11A1P12107 DARS-AS1-203ENST00000438432 768 ntTSL 3 BASIC20.09■□□□□ 0.81
COL11A1P12107 FAM172A-207ENST00000509739 1031 ntTSL 2 BASIC20.09■□□□□ 0.81
COL11A1P12107 CFL1-202ENST00000524553 860 ntTSL 2 BASIC20.09■□□□□ 0.81
COL11A1P12107 HOXD8-204ENST00000544999 1235 ntAPPRIS ALT2 TSL 5 BASIC20.09■□□□□ 0.81
COL11A1P12107 MNT-208ENST00000575394 606 ntTSL 4 BASIC20.09■□□□□ 0.81
COL11A1P12107 STK25P1-201ENST00000585406 838 ntBASIC20.09■□□□□ 0.81
COL11A1P12107 STX10-207ENST00000589083 1241 ntTSL 1 (best) BASIC20.09■□□□□ 0.81
COL11A1P12107 PCMTD1-206ENST00000521344 1712 ntTSL 3 BASIC20.09■□□□□ 0.81
COL11A1P12107 PNMA6E-201ENST00000445091 2192 ntAPPRIS P1 TSL 2 BASIC20.09■□□□□ 0.81
COL11A1P12107 EOMES-202ENST00000449599 2829 ntTSL 1 (best) BASIC20.09■□□□□ 0.81
COL11A1P12107 GCAT-202ENST00000323205 1656 ntTSL 2 BASIC20.09■□□□□ 0.81
COL11A1P12107 DMKN-209ENST00000429837 1447 ntAPPRIS ALT2 TSL 1 (best) BASIC20.09■□□□□ 0.81
COL11A1P12107 ANKDD1B-204ENST00000601380 2569 ntAPPRIS P1 TSL 5 BASIC20.09■□□□□ 0.81
COL11A1P12107 KRT81-201ENST00000327741 1929 ntAPPRIS P2 TSL 1 (best) BASIC20.09■□□□□ 0.81
COL11A1P12107 PLCXD1-202ENST00000381663 1863 ntAPPRIS P2 TSL 5 BASIC20.09■□□□□ 0.81
COL11A1P12107 NKIRAS1-207ENST00000437230 1898 ntAPPRIS ALT1 TSL 5 BASIC20.09■□□□□ 0.81
COL11A1P12107 COPS7B-207ENST00000410024 1103 ntAPPRIS P1 TSL 2 BASIC20.09■□□□□ 0.81
COL11A1P12107 HTR5BP-201ENST00000430851 1154 ntBASIC20.09■□□□□ 0.81
COL11A1P12107 AL669831.5-202ENST00000457084 566 ntTSL 4 BASIC20.09■□□□□ 0.81
COL11A1P12107 FBXL21-206ENST00000495672 589 ntTSL 4 BASIC20.09■□□□□ 0.81
COL11A1P12107 AL390334.1-205ENST00000555797 411 ntTSL 3 BASIC20.09■□□□□ 0.81
COL11A1P12107 TNFRSF14-AS1-205ENST00000449660 1629 ntTSL 2 BASIC20.08■□□□□ 0.81
COL11A1P12107 KIF25-202ENST00000354419 1510 ntAPPRIS P1 TSL 1 (best) BASIC20.08■□□□□ 0.81
COL11A1P12107 ALG3-201ENST00000397676 1528 ntAPPRIS P1 TSL 1 (best) BASIC20.08■□□□□ 0.81
COL11A1P12107 SPATA20-226ENST00000619622 2769 ntAPPRIS P2 TSL 5 BASIC20.08■□□□□ 0.81
COL11A1P12107 PCCB-209ENST00000469217 1841 ntAPPRIS ALT2 TSL 2 BASIC20.08■□□□□ 0.8
COL11A1P12107 WDR90-202ENST00000315764 1454 ntTSL 1 (best) BASIC20.08■□□□□ 0.8
COL11A1P12107 IGLL3P-201ENST00000412472 434 ntBASIC20.08■□□□□ 0.8
COL11A1P12107 SLC4A1APP2-201ENST00000424054 1259 ntBASIC20.08■□□□□ 0.8
COL11A1P12107 SIGLEC30P-201ENST00000455569 941 ntBASIC20.08■□□□□ 0.8
COL11A1P12107 AC130456.4-201ENST00000568635 665 ntTSL 2 BASIC20.08■□□□□ 0.8
COL11A1P12107 ELOF1-204ENST00000587806 1172 ntTSL 2 BASIC20.08■□□□□ 0.8
COL11A1P12107 AC116407.2-201ENST00000613639 860 ntBASIC20.08■□□□□ 0.8
COL11A1P12107 CR381653.1-203ENST00000625153 577 ntTSL 5 BASIC20.08■□□□□ 0.8
COL11A1P12107 MON1B-202ENST00000439557 1759 ntTSL 2 BASIC20.08■□□□□ 0.8
COL11A1P12107 FAM198A-202ENST00000430121 3121 ntAPPRIS P2 TSL 5 BASIC20.08■□□□□ 0.8
COL11A1P12107 MZF1-203ENST00000594234 2385 ntTSL 1 (best) BASIC20.08■□□□□ 0.8
COL11A1P12107 STK4-201ENST00000372801 2038 ntTSL 2 BASIC20.08■□□□□ 0.8
COL11A1P12107 TRAF3-203ENST00000392745 2459 ntAPPRIS P1 TSL 1 (best) BASIC20.08■□□□□ 0.8
COL11A1P12107 COPS7A-215ENST00000543155 2127 ntAPPRIS P1 TSL 1 (best) BASIC20.07■□□□□ 0.8
COL11A1P12107 SLC12A9-215ENST00000540482 2269 ntTSL 2 BASIC20.07■□□□□ 0.8
COL11A1P12107 TBL1Y-203ENST00000383032 2407 ntAPPRIS P1 TSL 1 (best) BASIC20.07■□□□□ 0.8
COL11A1P12107 WIPF1-206ENST00000409891 2568 ntAPPRIS ALT2 TSL 1 (best) BASIC20.07■□□□□ 0.8
COL11A1P12107 ST8SIA4-202ENST00000451528 1794 ntTSL 1 (best) BASIC20.07■□□□□ 0.8
COL11A1P12107 NPRL2-201ENST00000232501 1700 ntAPPRIS P1 TSL 1 (best) BASIC20.07■□□□□ 0.8
COL11A1P12107 PNRC2-202ENST00000374468 814 ntAPPRIS P1 TSL 2 BASIC20.07■□□□□ 0.8
COL11A1P12107 SH3TC1-202ENST00000382521 829 ntTSL 1 (best) BASIC20.07■□□□□ 0.8
COL11A1P12107 METTL21AP1-201ENST00000438852 635 ntBASIC20.07■□□□□ 0.8
COL11A1P12107 AL020996.1-203ENST00000536896 2307 ntBASIC20.07■□□□□ 0.8
COL11A1P12107 CYBA-210ENST00000569359 1415 ntTSL 1 (best) BASIC20.07■□□□□ 0.8
COL11A1P12107 ICAM2-205ENST00000578379 1064 ntTSL 5 BASIC20.07■□□□□ 0.8
COL11A1P12107 ICAM2-206ENST00000578892 1056 ntTSL 3 BASIC20.07■□□□□ 0.8
COL11A1P12107 CDC42EP4-206ENST00000581014 737 ntTSL 5 BASIC20.07■□□□□ 0.8
COL11A1P12107 AP002449.1-201ENST00000588211 474 ntTSL 2 BASIC20.07■□□□□ 0.8
COL11A1P12107 AC027612.4-201ENST00000605371 583 ntBASIC20.07■□□□□ 0.8
COL11A1P12107 SCARF2-202ENST00000622235 3232 ntAPPRIS ALT2 TSL 1 (best) BASIC20.07■□□□□ 0.8
Retrieved 100 of 98,524 protein–RNA pairs in 30.9 ms