Protein–RNA interactions for Protein: O95985

TOP3B, DNA topoisomerase 3-beta-1, humanhuman

Known RBP Predictions only

Length 862 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
TOP3BO95985 SIM2-201ENST00000290399 4442 ntAPPRIS P1 TSL 1 (best) BASIC18.27■□□□□ 0.52
TOP3BO95985 LINC00960-201ENST00000463183 1333 ntTSL 1 (best) BASIC18.27■□□□□ 0.52
TOP3BO95985 PLD3-206ENST00000409587 2180 ntAPPRIS P1 TSL 5 BASIC18.27■□□□□ 0.52
TOP3BO95985 IQSEC1-201ENST00000273221 5279 ntAPPRIS P1 TSL 1 (best) BASIC18.27■□□□□ 0.52
TOP3BO95985 CFC1-203ENST00000621673 1444 ntTSL 2 BASIC18.27■□□□□ 0.52
TOP3BO95985 KLHDC4-227ENST00000622456 1422 ntTSL 5 BASIC18.27■□□□□ 0.52
TOP3BO95985 OBSL1-201ENST00000289656 2274 ntTSL 5 BASIC18.27■□□□□ 0.52
TOP3BO95985 SLC47A2-202ENST00000350657 2285 ntAPPRIS ALT2 TSL 1 (best) BASIC18.27■□□□□ 0.52
TOP3BO95985 KCNE3-201ENST00000310128 3143 ntAPPRIS P1 TSL 1 (best) BASIC18.27■□□□□ 0.52
TOP3BO95985 ELANE-201ENST00000263621 920 ntAPPRIS P1 TSL 1 (best) BASIC18.27■□□□□ 0.52
TOP3BO95985 MIR202HG-201ENST00000300167 384 ntTSL 2 BASIC18.27■□□□□ 0.52
TOP3BO95985 UXT-201ENST00000333119 574 ntAPPRIS P1 TSL 1 (best) BASIC18.27■□□□□ 0.52
TOP3BO95985 PHOSPHO2-201ENST00000359744 1125 ntAPPRIS P1 TSL 1 (best) BASIC18.27■□□□□ 0.52
TOP3BO95985 ILF2-202ENST00000368681 726 ntTSL 2 BASIC18.27■□□□□ 0.52
TOP3BO95985 MIR564-202ENST00000385049 94 ntBASIC18.27■□□□□ 0.52
TOP3BO95985 C7orf34-201ENST00000409607 766 ntAPPRIS P2 TSL 1 (best) BASIC18.27■□□□□ 0.52
TOP3BO95985 ELP6-205ENST00000439305 880 ntTSL 2 BASIC18.27■□□□□ 0.52
TOP3BO95985 AC080013.1-203ENST00000468242 720 ntTSL 5 BASIC18.27■□□□□ 0.52
TOP3BO95985 TOB2P1-201ENST00000469761 992 ntBASIC18.27■□□□□ 0.52
TOP3BO95985 AC080013.1-201ENST00000495318 566 ntTSL 4 BASIC18.27■□□□□ 0.52
TOP3BO95985 AC113382.1-201ENST00000500267 1253 ntTSL 1 (best) BASIC18.27■□□□□ 0.52
TOP3BO95985 AP006621.4-201ENST00000527021 532 ntTSL 5 BASIC18.27■□□□□ 0.52
TOP3BO95985 ATP5G2-204ENST00000549164 745 ntAPPRIS P1 TSL 3 BASIC18.27■□□□□ 0.52
TOP3BO95985 CIB2-208ENST00000560618 804 ntTSL 2 BASIC18.27■□□□□ 0.52
TOP3BO95985 ATP5G2-209ENST00000602871 668 ntAPPRIS P1 TSL 2 BASIC18.27■□□□□ 0.52
TOP3BO95985 AC138894.3-201ENST00000603787 634 ntBASIC18.27■□□□□ 0.52
TOP3BO95985 AC024243.1-201ENST00000609234 778 ntBASIC18.27■□□□□ 0.52
TOP3BO95985 HOTTIP_1.1-201ENST00000620415 57 ntBASIC18.27■□□□□ 0.52
TOP3BO95985 SKOR1-202ENST00000380035 3675 ntAPPRIS ALT2 TSL 5 BASIC18.27■□□□□ 0.52
TOP3BO95985 ELMOD1-202ENST00000443271 1990 ntAPPRIS P1 TSL 2 BASIC18.27■□□□□ 0.52
TOP3BO95985 GOLGA7-204ENST00000520817 1984 ntAPPRIS P1 TSL 1 (best) BASIC18.27■□□□□ 0.52
TOP3BO95985 STX17-205ENST00000525640 2523 ntAPPRIS P1 TSL 2 BASIC18.27■□□□□ 0.52
TOP3BO95985 CYP2D7-201ENST00000358097 1655 ntTSL 1 (best) BASIC18.27■□□□□ 0.52
TOP3BO95985 PP12613-201ENST00000424958 2230 ntBASIC18.27■□□□□ 0.52
TOP3BO95985 NR2F1-201ENST00000327111 3732 ntAPPRIS P1 TSL 1 (best) BASIC18.27■□□□□ 0.51
TOP3BO95985 SYVN1-201ENST00000294256 3048 ntAPPRIS P1 TSL 1 (best) BASIC18.27■□□□□ 0.51
TOP3BO95985 EIF2B4-210ENST00000493344 1949 ntTSL 5 BASIC18.27■□□□□ 0.51
TOP3BO95985 CBS-201ENST00000352178 2583 ntAPPRIS P1 TSL 1 (best) BASIC18.27■□□□□ 0.51
TOP3BO95985 PDE4D-204ENST00000358923 2969 ntTSL 1 (best) BASIC18.27■□□□□ 0.51
TOP3BO95985 DNM1-202ENST00000372923 3244 ntAPPRIS P3 TSL 1 (best) BASIC18.27■□□□□ 0.51
TOP3BO95985 SERPINE2-206ENST00000447280 1716 ntTSL 2 BASIC18.26■□□□□ 0.51
TOP3BO95985 SH2D2A-201ENST00000368198 1599 ntAPPRIS ALT2 TSL 1 (best) BASIC18.26■□□□□ 0.51
TOP3BO95985 LINC01700-201ENST00000433952 1598 ntTSL 1 (best) BASIC18.26■□□□□ 0.51
TOP3BO95985 UBE2Q2-201ENST00000267938 3130 ntAPPRIS P1 TSL 1 (best) BASIC18.26■□□□□ 0.51
TOP3BO95985 RNPS1-203ENST00000397086 2069 ntAPPRIS P1 TSL 1 (best) BASIC18.26■□□□□ 0.51
TOP3BO95985 HOXA13-201ENST00000222753 5030 ntAPPRIS P1 TSL 1 (best) BASIC18.26■□□□□ 0.51
TOP3BO95985 KIRREL2-205ENST00000592409 2563 ntAPPRIS ALT2 TSL 1 (best) BASIC18.26■□□□□ 0.51
TOP3BO95985 CACNA1B-206ENST00000371372 9790 ntAPPRIS P4 TSL 5 BASIC18.26■□□□□ 0.51
TOP3BO95985 FOLH1-204ENST00000356696 2403 ntTSL 1 (best) BASIC18.26■□□□□ 0.51
TOP3BO95985 RBX1-201ENST00000216225 1188 ntAPPRIS P1 TSL 1 (best) BASIC18.26■□□□□ 0.51
TOP3BO95985 VAMP5-201ENST00000306384 689 ntAPPRIS P1 TSL 1 (best) BASIC18.26■□□□□ 0.51
TOP3BO95985 HOPX-201ENST00000317745 1129 ntAPPRIS P1 TSL 1 (best) BASIC18.26■□□□□ 0.51
TOP3BO95985 TSPY2-201ENST00000320701 1161 ntAPPRIS P5 TSL 1 (best) BASIC18.26■□□□□ 0.51
TOP3BO95985 DFFB-203ENST00000341385 572 ntTSL 5 BASIC18.26■□□□□ 0.51
TOP3BO95985 TMEM240-201ENST00000378733 718 ntAPPRIS P1 TSL 2 BASIC18.26■□□□□ 0.51
TOP3BO95985 UFSP1-201ENST00000388761 996 ntAPPRIS P1 BASIC18.26■□□□□ 0.51
TOP3BO95985 TSPY22P-201ENST00000427496 604 ntBASIC18.26■□□□□ 0.51
TOP3BO95985 TSPY2-203ENST00000429039 779 ntAPPRIS ALT2 TSL 2 BASIC18.26■□□□□ 0.51
TOP3BO95985 HMGN1P19-201ENST00000436976 333 ntBASIC18.26■□□□□ 0.51
TOP3BO95985 AC034232.1-201ENST00000506026 1064 ntBASIC18.26■□□□□ 0.51
TOP3BO95985 AC079602.3-201ENST00000623931 403 ntBASIC18.26■□□□□ 0.51
TOP3BO95985 WDR6-223ENST00000627177 207 ntTSL 2 BASIC18.26■□□□□ 0.51
TOP3BO95985 VPS51-217ENST00000639871 243 ntTSL 5 BASIC18.26■□□□□ 0.51
TOP3BO95985 GAMT-202ENST00000447102 1769 ntTSL 2 BASIC18.26■□□□□ 0.51
TOP3BO95985 LRCH3-201ENST00000334859 2258 ntTSL 1 (best) BASIC18.26■□□□□ 0.51
TOP3BO95985 RCAN3-209ENST00000616511 2527 ntTSL 1 (best) BASIC18.26■□□□□ 0.51
TOP3BO95985 ZBTB46-203ENST00000395104 5198 ntAPPRIS P1 TSL 2 BASIC18.26■□□□□ 0.51
TOP3BO95985 ZNF618-203ENST00000374126 3018 ntAPPRIS ALT2 TSL 1 (best) BASIC18.26■□□□□ 0.51
TOP3BO95985 GRB10-208ENST00000403097 5432 ntTSL 1 (best) BASIC18.26■□□□□ 0.51
TOP3BO95985 SLC35F5-201ENST00000245680 4412 ntAPPRIS P1 TSL 1 (best) BASIC18.26■□□□□ 0.51
TOP3BO95985 NOMO2-202ENST00000381474 3911 ntAPPRIS ALT2 TSL 5 BASIC18.26■□□□□ 0.51
TOP3BO95985 DUS1L-201ENST00000306796 2068 ntAPPRIS P1 TSL 1 (best) BASIC18.26■□□□□ 0.51
TOP3BO95985 TCIRG1-201ENST00000265686 2677 ntAPPRIS P1 TSL 1 (best) BASIC18.26■□□□□ 0.51
TOP3BO95985 PHF20L1-201ENST00000220847 3297 ntTSL 5 BASIC18.25■□□□□ 0.51
TOP3BO95985 CYSTM1-201ENST00000261811 1336 ntAPPRIS P1 TSL 1 (best) BASIC18.25■□□□□ 0.51
TOP3BO95985 IL9RP2-201ENST00000423948 1312 ntBASIC18.25■□□□□ 0.51
TOP3BO95985 TMSB4Y-201ENST00000284856 1669 ntAPPRIS P1 TSL 1 (best) BASIC18.25■□□□□ 0.51
TOP3BO95985 SQSTM1-202ENST00000389805 2986 ntAPPRIS P1 TSL 1 (best) BASIC18.25■□□□□ 0.51
TOP3BO95985 IRF3-202ENST00000377135 1442 ntTSL 1 (best) BASIC18.25■□□□□ 0.51
TOP3BO95985 RSRC1-211ENST00000480820 1410 ntAPPRIS P1 TSL 5 BASIC18.25■□□□□ 0.51
TOP3BO95985 CORO6-212ENST00000584969 1416 ntAPPRIS ALT1 TSL 5 BASIC18.25■□□□□ 0.51
TOP3BO95985 TNFAIP3-207ENST00000614035 1430 ntTSL 5 BASIC18.25■□□□□ 0.51
TOP3BO95985 MYOG-201ENST00000241651 1528 ntAPPRIS P1 TSL 1 (best) BASIC18.25■□□□□ 0.51
TOP3BO95985 C16orf59-204ENST00000563531 1864 ntAPPRIS ALT2 TSL 5 BASIC18.25■□□□□ 0.51
TOP3BO95985 PLEKHG5-212ENST00000537245 4794 ntAPPRIS ALT2 TSL 2 BASIC18.25■□□□□ 0.51
TOP3BO95985 CDKN1B-201ENST00000228872 2657 ntAPPRIS P1 TSL 1 (best) BASIC18.25■□□□□ 0.51
TOP3BO95985 PEPD-203ENST00000436370 1638 ntTSL 2 BASIC18.25■□□□□ 0.51
TOP3BO95985 ITM2C-204ENST00000409704 1106 ntTSL 5 BASIC18.25■□□□□ 0.51
TOP3BO95985 AC093734.1-201ENST00000416100 242 ntTSL 3 BASIC18.25■□□□□ 0.51
TOP3BO95985 DRAXINP1-201ENST00000437611 948 ntBASIC18.25■□□□□ 0.51
TOP3BO95985 PRSS21-202ENST00000450020 1106 ntTSL 1 (best) BASIC18.25■□□□□ 0.51
TOP3BO95985 AC079848.1-202ENST00000507924 444 ntTSL 3 BASIC18.25■□□□□ 0.51
TOP3BO95985 C1QB-203ENST00000509305 1254 ntAPPRIS P1 TSL 1 (best) BASIC18.25■□□□□ 0.51
TOP3BO95985 AMACR-208ENST00000512079 858 ntTSL 1 (best) BASIC18.25■□□□□ 0.51
TOP3BO95985 C12orf76-202ENST00000546627 461 ntTSL 4 BASIC18.25■□□□□ 0.51
TOP3BO95985 DYNLL1-204ENST00000548214 616 ntTSL 2 BASIC18.25■□□□□ 0.51
TOP3BO95985 ETNK2-203ENST00000367202 2434 ntAPPRIS P3 TSL 1 (best) BASIC18.25■□□□□ 0.51
TOP3BO95985 PSTPIP1-201ENST00000379595 1840 ntAPPRIS ALT1 TSL 5 BASIC18.25■□□□□ 0.51
TOP3BO95985 PPP1R16A-202ENST00000435887 2273 ntAPPRIS P1 TSL 1 (best) BASIC18.25■□□□□ 0.51
TOP3BO95985 NYX-201ENST00000342595 2713 ntAPPRIS P1 TSL 1 (best) BASIC18.25■□□□□ 0.51
Retrieved 100 of 98,524 protein–RNA pairs in 12.5 ms