Protein–RNA interactions for Protein: O95096

NKX2-2, Homeobox protein Nkx-2.2, humanhuman

Predictions only

Length 273 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
NKX2-2O95096 HERPUD2-202ENST00000396081 3057 ntAPPRIS P1 TSL 1 (best) BASIC16.45■□□□□ 0.22
NKX2-2O95096 UBE2D2-202ENST00000398733 2702 ntAPPRIS P2 TSL 1 (best) BASIC16.45■□□□□ 0.22
NKX2-2O95096 FLOT2-202ENST00000394908 2618 ntAPPRIS P3 TSL 1 (best) BASIC16.45■□□□□ 0.22
NKX2-2O95096 TXNRD2-218ENST00000542719 2024 ntTSL 1 (best) BASIC16.45■□□□□ 0.22
NKX2-2O95096 SCARB1-208ENST00000544327 1812 ntTSL 5 BASIC16.45■□□□□ 0.22
NKX2-2O95096 NFKBID-210ENST00000606253 1736 ntAPPRIS ALT2 TSL 1 (best) BASIC16.45■□□□□ 0.22
NKX2-2O95096 MRPL4-203ENST00000393733 1620 ntTSL 5 BASIC16.45■□□□□ 0.22
NKX2-2O95096 PPA2-202ENST00000348706 1414 ntTSL 1 (best) BASIC16.45■□□□□ 0.22
NKX2-2O95096 AC125634.1-201ENST00000438758 1403 ntBASIC16.45■□□□□ 0.22
NKX2-2O95096 SPAG16-209ENST00000447990 1330 ntTSL 1 (best) BASIC16.45■□□□□ 0.22
NKX2-2O95096 CCDC137-201ENST00000329214 2468 ntAPPRIS P2 TSL 1 (best) BASIC16.44■□□□□ 0.22
NKX2-2O95096 TMEM198-201ENST00000344458 2393 ntAPPRIS P1 TSL 1 (best) BASIC16.44■□□□□ 0.22
NKX2-2O95096 AC104809.2-201ENST00000418218 2274 ntTSL 1 (best) BASIC16.44■□□□□ 0.22
NKX2-2O95096 B3GALNT1-202ENST00000392779 3221 ntAPPRIS P1 TSL 2 BASIC16.44■□□□□ 0.22
NKX2-2O95096 ARFGAP2-229ENST00000627920 2613 ntTSL 2 BASIC16.44■□□□□ 0.22
NKX2-2O95096 GGN-201ENST00000334928 2239 ntAPPRIS P1 TSL 1 (best) BASIC16.44■□□□□ 0.22
NKX2-2O95096 BCL2L10-201ENST00000260442 1249 ntAPPRIS P3 TSL 1 (best) BASIC16.44■□□□□ 0.22
NKX2-2O95096 ANKRD37-201ENST00000335174 1141 ntAPPRIS P1 TSL 1 (best) BASIC16.44■□□□□ 0.22
NKX2-2O95096 HIST1H2AI-201ENST00000358739 503 ntAPPRIS P1 BASIC16.44■□□□□ 0.22
NKX2-2O95096 S100A3-201ENST00000368712 579 ntAPPRIS P1 TSL 3 BASIC16.44■□□□□ 0.22
NKX2-2O95096 FAM239B-201ENST00000381106 1099 ntTSL 2 BASIC16.44■□□□□ 0.22
NKX2-2O95096 PDLIM7-205ENST00000393551 1226 ntTSL 1 (best) BASIC16.44■□□□□ 0.22
NKX2-2O95096 MIR1224-201ENST00000408193 85 ntBASIC16.44■□□□□ 0.22
NKX2-2O95096 AC005104.2-201ENST00000427818 678 ntBASIC16.44■□□□□ 0.22
NKX2-2O95096 ZNF436-AS1-203ENST00000454117 997 ntTSL 1 (best) BASIC16.44■□□□□ 0.22
NKX2-2O95096 AF186192.2-201ENST00000524514 423 ntTSL 3 BASIC16.44■□□□□ 0.22
NKX2-2O95096 EIF3C-211ENST00000566866 2986 ntAPPRIS P1 TSL 1 (best) BASIC16.44■□□□□ 0.22
NKX2-2O95096 BCL2L12-210ENST00000611631 1259 ntTSL 1 (best) BASIC16.44■□□□□ 0.22
NKX2-2O95096 ZNF133-212ENST00000622607 2660 ntAPPRIS ALT2 TSL 4 BASIC16.44■□□□□ 0.22
NKX2-2O95096 KDM8-202ENST00000441782 1612 ntTSL 2 BASIC16.44■□□□□ 0.22
NKX2-2O95096 KIZ-211ENST00000619574 1971 ntAPPRIS ALT2 TSL 2 BASIC16.44■□□□□ 0.22
NKX2-2O95096 GTF2IP1-210ENST00000622829 3605 ntTSL 1 (best) BASIC16.44■□□□□ 0.22
NKX2-2O95096 MAP6-201ENST00000304771 3334 ntAPPRIS P3 TSL 1 (best) BASIC16.44■□□□□ 0.22
NKX2-2O95096 SMPD1-201ENST00000342245 2452 ntAPPRIS ALT1 TSL 1 (best) BASIC16.43■□□□□ 0.22
NKX2-2O95096 BAGE2-202ENST00000474011 1482 ntTSL 2 BASIC16.43■□□□□ 0.22
NKX2-2O95096 ELN-202ENST00000320399 2274 ntAPPRIS ALT2 TSL 5 BASIC16.43■□□□□ 0.22
NKX2-2O95096 LINC01554-202ENST00000436592 2052 ntTSL 1 (best) BASIC16.43■□□□□ 0.22
NKX2-2O95096 PCAT7-201ENST00000452148 1164 ntTSL 2 BASIC16.43■□□□□ 0.22
NKX2-2O95096 ENDOV-205ENST00000518644 625 ntTSL 4 BASIC16.43■□□□□ 0.22
NKX2-2O95096 ADA-207ENST00000537820 1128 ntTSL 1 (best) BASIC16.43■□□□□ 0.22
NKX2-2O95096 AC140504.1-202ENST00000568222 652 ntTSL 5 BASIC16.43■□□□□ 0.22
NKX2-2O95096 DCTPP1-204ENST00000568434 853 ntTSL 2 BASIC16.43■□□□□ 0.22
NKX2-2O95096 ANAPC11-217ENST00000579978 575 ntAPPRIS P1 TSL 2 BASIC16.43■□□□□ 0.22
NKX2-2O95096 AC005336.2-201ENST00000593183 939 ntBASIC16.43■□□□□ 0.22
NKX2-2O95096 AC004130.1-202ENST00000603156 666 ntTSL 2 BASIC16.43■□□□□ 0.22
NKX2-2O95096 AL138831.2-201ENST00000606564 490 ntBASIC16.43■□□□□ 0.22
NKX2-2O95096 AL358472.4-201ENST00000633140 710 ntBASIC16.43■□□□□ 0.22
NKX2-2O95096 SPACA6-213ENST00000637797 1073 ntAPPRIS P1 TSL 1 (best) BASIC16.43■□□□□ 0.22
NKX2-2O95096 POLR2M-206ENST00000494490 1648 ntTSL 5 BASIC16.43■□□□□ 0.22
NKX2-2O95096 GFI1B-208ENST00000636263 1604 ntTSL 5 BASIC16.43■□□□□ 0.22
NKX2-2O95096 UQCRC1-201ENST00000203407 1985 ntAPPRIS P1 TSL 1 (best) BASIC16.43■□□□□ 0.22
NKX2-2O95096 GCDH-201ENST00000222214 1956 ntAPPRIS P1 TSL 1 (best) BASIC16.43■□□□□ 0.22
NKX2-2O95096 RASL11B-201ENST00000248706 1995 ntAPPRIS P1 TSL 1 (best) BASIC16.43■□□□□ 0.22
NKX2-2O95096 ATRN-201ENST00000262919 8633 ntAPPRIS P4 TSL 5 BASIC16.43■□□□□ 0.22
NKX2-2O95096 MXRA8-202ENST00000342753 2231 ntTSL 1 (best) BASIC16.43■□□□□ 0.22
NKX2-2O95096 MTHFD2L-203ENST00000395759 2354 ntAPPRIS P2 TSL 5 BASIC16.43■□□□□ 0.22
NKX2-2O95096 DYRK1B-203ENST00000430012 2007 ntAPPRIS ALT1 TSL 5 BASIC16.43■□□□□ 0.22
NKX2-2O95096 TRMT44-205ENST00000513449 1666 ntAPPRIS ALT2 TSL 1 (best) BASIC16.43■□□□□ 0.22
NKX2-2O95096 PROK1-201ENST00000271331 1338 ntAPPRIS P1 TSL 1 (best) BASIC16.43■□□□□ 0.22
NKX2-2O95096 SHBG-201ENST00000340624 1311 ntTSL 1 (best) BASIC16.43■□□□□ 0.22
NKX2-2O95096 ZNF419-204ENST00000415379 2186 ntAPPRIS ALT2 TSL 2 BASIC16.43■□□□□ 0.22
NKX2-2O95096 AC010460.3-201ENST00000511359 1579 ntBASIC16.43■□□□□ 0.22
NKX2-2O95096 HSD11B1L-223ENST00000616276 1580 ntAPPRIS ALT2 TSL 5 BASIC16.43■□□□□ 0.22
NKX2-2O95096 SUPT20H-202ENST00000356185 2681 ntAPPRIS P3 TSL 1 (best) BASIC16.42■□□□□ 0.22
NKX2-2O95096 NGFR-202ENST00000504201 1840 ntTSL 2 BASIC16.42■□□□□ 0.22
NKX2-2O95096 PHC1-212ENST00000543824 4292 ntAPPRIS P1 TSL 1 (best) BASIC16.42■□□□□ 0.22
NKX2-2O95096 IVNS1ABP-202ENST00000367498 4199 ntAPPRIS P1 TSL 1 (best) BASIC16.42■□□□□ 0.22
NKX2-2O95096 ADM-208ENST00000534464 1640 ntTSL 2 BASIC16.42■□□□□ 0.22
NKX2-2O95096 ALG3-201ENST00000397676 1528 ntAPPRIS P1 TSL 1 (best) BASIC16.42■□□□□ 0.22
NKX2-2O95096 ARMC10P1-201ENST00000313754 855 ntBASIC16.42■□□□□ 0.22
NKX2-2O95096 TYMSOS-201ENST00000323813 844 ntTSL 1 (best) BASIC16.42■□□□□ 0.22
NKX2-2O95096 COX5BP2-201ENST00000392354 334 ntBASIC16.42■□□□□ 0.22
NKX2-2O95096 ING5-202ENST00000406941 946 ntAPPRIS ALT1 TSL 1 (best) BASIC16.42■□□□□ 0.22
NKX2-2O95096 COPS8-203ENST00000409334 794 ntTSL 5 BASIC16.42■□□□□ 0.22
NKX2-2O95096 AP002383.4-201ENST00000442518 975 ntBASIC16.42■□□□□ 0.22
NKX2-2O95096 PACRGL-218ENST00000507634 1142 ntTSL 5 BASIC16.42■□□□□ 0.22
NKX2-2O95096 CCDC61-201ENST00000536603 1282 ntAPPRIS ALT2 TSL 1 (best) BASIC16.42■□□□□ 0.22
NKX2-2O95096 TSFM-208ENST00000543727 651 ntTSL 1 (best) BASIC16.42■□□□□ 0.22
NKX2-2O95096 TPM1-226ENST00000560959 925 ntTSL 2 BASIC16.42■□□□□ 0.22
NKX2-2O95096 ANAPC11-204ENST00000571024 668 ntAPPRIS P1 TSL 1 (best) BASIC16.42■□□□□ 0.22
NKX2-2O95096 ANAPC11-218ENST00000582222 523 ntTSL 2 BASIC16.42■□□□□ 0.22
NKX2-2O95096 CRTAC1-201ENST00000309155 1946 ntAPPRIS ALT2 TSL 1 (best) BASIC16.42■□□□□ 0.22
NKX2-2O95096 ZNF140-207ENST00000440550 1663 ntTSL 2 BASIC16.42■□□□□ 0.22
NKX2-2O95096 SVOPL-204ENST00000436657 1420 ntTSL 1 (best) BASIC16.42■□□□□ 0.22
NKX2-2O95096 LRRD1-201ENST00000343318 2073 ntTSL 1 (best) BASIC16.42■□□□□ 0.22
NKX2-2O95096 ETFBKMT-202ENST00000395763 2055 ntAPPRIS P1 TSL 1 (best) BASIC16.42■□□□□ 0.22
NKX2-2O95096 TRPM2-202ENST00000300482 5989 ntAPPRIS P3 TSL 1 (best) BASIC16.42■□□□□ 0.22
NKX2-2O95096 NFS1-202ENST00000374085 2645 ntTSL 2 BASIC16.42■□□□□ 0.22
NKX2-2O95096 KRT18P1-202ENST00000452408 1331 ntBASIC16.42■□□□□ 0.22
NKX2-2O95096 SRPX-202ENST00000432886 1725 ntTSL 2 BASIC16.42■□□□□ 0.22
NKX2-2O95096 TRAPPC12-201ENST00000324266 2508 ntAPPRIS P2 TSL 1 (best) BASIC16.42■□□□□ 0.22
NKX2-2O95096 CRMP1-202ENST00000397890 2911 ntAPPRIS P1 TSL 1 (best) BASIC16.42■□□□□ 0.22
NKX2-2O95096 CALM3-201ENST00000291295 2289 ntAPPRIS P1 TSL 1 (best) BASIC16.42■□□□□ 0.22
NKX2-2O95096 FZR1-202ENST00000395095 1491 ntAPPRIS ALT1 TSL 1 (best) BASIC16.42■□□□□ 0.22
NKX2-2O95096 ZNF280B-203ENST00000626650 5721 ntAPPRIS P1 TSL 2 BASIC16.41■□□□□ 0.22
NKX2-2O95096 AC105001.2-201ENST00000554914 1753 ntAPPRIS P1 TSL 2 BASIC16.41■□□□□ 0.22
NKX2-2O95096 SLC7A9-204ENST00000590341 1752 ntAPPRIS P1 TSL 1 (best) BASIC16.41■□□□□ 0.22
NKX2-2O95096 ZNF517-201ENST00000359971 2335 ntAPPRIS P1 TSL 4 BASIC16.41■□□□□ 0.22
NKX2-2O95096 ZBTB4-201ENST00000311403 5956 ntAPPRIS P1 TSL 1 (best) BASIC16.41■□□□□ 0.22
NKX2-2O95096 RNF2-201ENST00000367509 1677 ntTSL 2 BASIC16.41■□□□□ 0.22
Retrieved 100 of 98,524 protein–RNA pairs in 29.5 ms