Protein–RNA interactions for Protein: O60224

SSX4, Protein SSX4, humanhuman

Predictions only

Length 188 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SSX4O60224 ZNF575-205ENST00000601282 1086 ntAPPRIS P1 TSL 2 BASIC16.21■□□□□ 0.19
SSX4O60224 PTGDR2-201ENST00000332539 2895 ntAPPRIS P1 TSL 1 (best) BASIC16.21■□□□□ 0.19
SSX4O60224 ZNF114-206ENST00000600687 1742 ntAPPRIS P1 TSL 5 BASIC16.21■□□□□ 0.19
SSX4O60224 CHAT-205ENST00000395562 2528 ntAPPRIS ALT2 TSL 1 (best) BASIC16.21■□□□□ 0.19
SSX4O60224 TSG101-201ENST00000251968 1824 ntAPPRIS P1 TSL 1 (best) BASIC16.21■□□□□ 0.19
SSX4O60224 MBD1-208ENST00000398493 1845 ntTSL 5 BASIC16.21■□□□□ 0.19
SSX4O60224 IFRD1-201ENST00000005558 1834 ntAPPRIS P1 TSL 1 (best) BASIC16.21■□□□□ 0.19
SSX4O60224 WDR90-215ENST00000549091 5589 ntAPPRIS ALT2 TSL 5 BASIC16.21■□□□□ 0.19
SSX4O60224 RAB15-203ENST00000533601 3515 ntAPPRIS P1 TSL 1 (best) BASIC16.21■□□□□ 0.19
SSX4O60224 HSPB6-201ENST00000004982 1457 ntAPPRIS P1 TSL 1 (best) BASIC16.21■□□□□ 0.19
SSX4O60224 ULK3-217ENST00000568667 1470 ntTSL 5 BASIC16.21■□□□□ 0.19
SSX4O60224 PPP1R7-207ENST00000407025 1592 ntAPPRIS P1 TSL 5 BASIC16.21■□□□□ 0.18
SSX4O60224 WDR41-208ENST00000507029 1553 ntTSL 2 BASIC16.21■□□□□ 0.18
SSX4O60224 ZNF140-207ENST00000440550 1663 ntTSL 2 BASIC16.21■□□□□ 0.18
SSX4O60224 AC126773.2-201ENST00000562172 1682 ntTSL 3 BASIC16.21■□□□□ 0.18
SSX4O60224 TIGD2-202ENST00000603357 3217 ntAPPRIS P1 TSL 4 BASIC16.21■□□□□ 0.18
SSX4O60224 SELENOF-207ENST00000611507 1785 ntTSL 5 BASIC16.21■□□□□ 0.18
SSX4O60224 MRTO4-201ENST00000330263 2315 ntAPPRIS P1 TSL 1 (best) BASIC16.2■□□□□ 0.18
SSX4O60224 PHF20L1-203ENST00000337920 2311 ntTSL 1 (best) BASIC16.2■□□□□ 0.18
SSX4O60224 FOXA1-201ENST00000250448 2862 ntAPPRIS P1 TSL 1 (best) BASIC16.2■□□□□ 0.18
SSX4O60224 KLHL14-201ENST00000358095 1884 ntTSL 1 (best) BASIC16.2■□□□□ 0.18
SSX4O60224 SLC10A3-204ENST00000393587 1862 ntAPPRIS P3 TSL 2 BASIC16.2■□□□□ 0.18
SSX4O60224 AC093677.2-201ENST00000600169 1863 ntBASIC16.2■□□□□ 0.18
SSX4O60224 PROSER1-201ENST00000352251 5168 ntAPPRIS P2 TSL 1 (best) BASIC16.2■□□□□ 0.18
SSX4O60224 SARAF-214ENST00000545648 1976 ntTSL 1 (best) BASIC16.2■□□□□ 0.18
SSX4O60224 THOC3-212ENST00000628318 1442 ntTSL 5 BASIC16.2■□□□□ 0.18
SSX4O60224 TMEM175-220ENST00000515740 1514 ntTSL 3 BASIC16.2■□□□□ 0.18
SSX4O60224 ADARB1-202ENST00000360697 6604 ntTSL 1 (best) BASIC16.2■□□□□ 0.18
SSX4O60224 CXXC1-201ENST00000285106 2936 ntAPPRIS P3 TSL 1 (best) BASIC16.2■□□□□ 0.18
SSX4O60224 ACSS1-201ENST00000323482 3680 ntAPPRIS P1 TSL 1 (best) BASIC16.2■□□□□ 0.18
SSX4O60224 ST6GALNAC6-216ENST00000622357 2396 ntAPPRIS ALT1 TSL 1 (best) BASIC16.2■□□□□ 0.18
SSX4O60224 TSPAN3-201ENST00000267970 6467 ntAPPRIS P1 TSL 1 (best) BASIC16.2■□□□□ 0.18
SSX4O60224 NLGN2-201ENST00000302926 4642 ntAPPRIS P1 TSL 1 (best) BASIC16.2■□□□□ 0.18
SSX4O60224 SERTM1-201ENST00000315190 3207 ntAPPRIS P1 TSL 1 (best) BASIC16.2■□□□□ 0.18
SSX4O60224 C1orf159-205ENST00000421241 1841 ntAPPRIS P3 TSL 2 BASIC16.2■□□□□ 0.18
SSX4O60224 PTGDS-202ENST00000371625 807 ntAPPRIS P1 TSL 1 (best) BASIC16.2■□□□□ 0.18
SSX4O60224 KLHDC7B-201ENST00000395676 2991 ntAPPRIS P1 BASIC16.2■□□□□ 0.18
SSX4O60224 KCNMA1-220ENST00000481070 896 ntTSL 2 BASIC16.2■□□□□ 0.18
SSX4O60224 CCNG1-211ENST00000512163 919 ntTSL 2 BASIC16.2■□□□□ 0.18
SSX4O60224 AZIN1-AS1-214ENST00000522850 473 ntTSL 3 BASIC16.2■□□□□ 0.18
SSX4O60224 AP003041.3-201ENST00000527151 707 ntBASIC16.2■□□□□ 0.18
SSX4O60224 GSKIP-207ENST00000556095 3834 ntAPPRIS P1 TSL 2 BASIC16.2■□□□□ 0.18
SSX4O60224 METRN-205ENST00000568415 612 ntAPPRIS ALT2 TSL 3 BASIC16.2■□□□□ 0.18
SSX4O60224 ZNF667-AS1-206ENST00000591797 535 ntTSL 5 BASIC16.2■□□□□ 0.18
SSX4O60224 REXO1L9P-201ENST00000604264 2108 ntBASIC16.2■□□□□ 0.18
SSX4O60224 SMIM20-205ENST00000614775 1190 ntTSL 5 BASIC16.2■□□□□ 0.18
SSX4O60224 AC243829.1-201ENST00000615128 1059 ntTSL 2 BASIC16.2■□□□□ 0.18
SSX4O60224 AC009477.2-201ENST00000635976 171 ntAPPRIS P1 BASIC16.2■□□□□ 0.18
SSX4O60224 MYC-208ENST00000641036 567 ntBASIC16.2■□□□□ 0.18
SSX4O60224 FUK-207ENST00000571514 3054 ntTSL 2 BASIC16.2■□□□□ 0.18
SSX4O60224 SPPL2C-201ENST00000329196 2238 ntAPPRIS P1 BASIC16.2■□□□□ 0.18
SSX4O60224 DYNLL1-209ENST00000550845 1376 ntTSL 1 (best) BASIC16.2■□□□□ 0.18
SSX4O60224 MFSD1-201ENST00000264266 1594 ntAPPRIS P1 TSL 1 (best) BASIC16.2■□□□□ 0.18
SSX4O60224 TSPAN15-201ENST00000373290 1698 ntAPPRIS P1 TSL 1 (best) BASIC16.2■□□□□ 0.18
SSX4O60224 LINC00554-201ENST00000564841 3011 ntBASIC16.2■□□□□ 0.18
SSX4O60224 DUS1L-202ENST00000354321 2151 ntAPPRIS P1 TSL 1 (best) BASIC16.2■□□□□ 0.18
SSX4O60224 PARP16-202ENST00000444347 2352 ntTSL 2 BASIC16.2■□□□□ 0.18
SSX4O60224 MGAT2-201ENST00000305386 2687 ntAPPRIS P1 BASIC16.2■□□□□ 0.18
SSX4O60224 MAP3K8-207ENST00000542547 2782 ntAPPRIS P1 TSL 1 (best) BASIC16.2■□□□□ 0.18
SSX4O60224 GMIP-204ENST00000587238 2987 ntTSL 1 (best) BASIC16.2■□□□□ 0.18
SSX4O60224 ZNF628-201ENST00000391718 3177 ntAPPRIS ALT2 BASIC16.2■□□□□ 0.18
SSX4O60224 FAM50B-201ENST00000380272 1628 ntAPPRIS P1 TSL 1 (best) BASIC16.19■□□□□ 0.18
SSX4O60224 CCDC88C-203ENST00000389856 1641 ntTSL 1 (best) BASIC16.19■□□□□ 0.18
SSX4O60224 CXorf67-201ENST00000342995 1929 ntAPPRIS P1 BASIC16.19■□□□□ 0.18
SSX4O60224 ZNF18-204ENST00000580306 2330 ntAPPRIS P3 TSL 2 BASIC16.19■□□□□ 0.18
SSX4O60224 PPRC1-201ENST00000278070 5330 ntAPPRIS P1 TSL 1 (best) BASIC16.19■□□□□ 0.18
SSX4O60224 PKD1P1-201ENST00000458669 6805 ntBASIC16.19■□□□□ 0.18
SSX4O60224 TCP10L2-202ENST00000366832 2185 ntAPPRIS P2 TSL 1 (best) BASIC16.19■□□□□ 0.18
SSX4O60224 CLDN11-201ENST00000064724 2169 ntAPPRIS P1 TSL 1 (best) BASIC16.19■□□□□ 0.18
SSX4O60224 ITSN2-201ENST00000355123 6300 ntAPPRIS P4 TSL 1 (best) BASIC16.19■□□□□ 0.18
SSX4O60224 AC004951.4-201ENST00000454572 2076 ntTSL 1 (best) BASIC16.19■□□□□ 0.18
SSX4O60224 PCCB-208ENST00000468777 1877 ntAPPRIS ALT2 TSL 3 BASIC16.19■□□□□ 0.18
SSX4O60224 UCHL5-206ENST00000367455 5327 ntAPPRIS P3 TSL 1 (best) BASIC16.19■□□□□ 0.18
SSX4O60224 FAM131A-204ENST00000418281 1664 ntTSL 5 BASIC16.19■□□□□ 0.18
SSX4O60224 PIP4K2C-202ENST00000422156 1558 ntTSL 2 BASIC16.19■□□□□ 0.18
SSX4O60224 AC008691.1-203ENST00000515337 1580 ntTSL 2 BASIC16.19■□□□□ 0.18
SSX4O60224 ZNF280D-205ENST00000559000 4726 ntAPPRIS ALT2 TSL 2 BASIC16.19■□□□□ 0.18
SSX4O60224 NAA60-235ENST00000576916 1567 ntTSL 1 (best) BASIC16.19■□□□□ 0.18
SSX4O60224 TSC22D4-202ENST00000393991 1469 ntTSL 2 BASIC16.19■□□□□ 0.18
SSX4O60224 AZU1-201ENST00000233997 908 ntAPPRIS P1 TSL 1 (best) BASIC16.19■□□□□ 0.18
SSX4O60224 CD70-201ENST00000245903 913 ntAPPRIS P1 TSL 1 (best) BASIC16.19■□□□□ 0.18
SSX4O60224 DGCR6L-201ENST00000248879 1154 ntAPPRIS P1 TSL 1 (best) BASIC16.19■□□□□ 0.18
SSX4O60224 ABCD1-202ENST00000370129 1016 ntTSL 2 BASIC16.19■□□□□ 0.18
SSX4O60224 DDRGK1-202ENST00000380201 1128 ntTSL 2 BASIC16.19■□□□□ 0.18
SSX4O60224 ISCU-202ENST00000392807 1069 ntTSL 1 (best) BASIC16.19■□□□□ 0.18
SSX4O60224 ISCU-203ENST00000431221 799 ntTSL 2 BASIC16.19■□□□□ 0.18
SSX4O60224 RNF144A-AS1-204ENST00000437589 618 ntTSL 2 BASIC16.19■□□□□ 0.18
SSX4O60224 AC004540.1-201ENST00000439120 891 ntTSL 2 BASIC16.19■□□□□ 0.18
SSX4O60224 AL451069.1-201ENST00000455414 634 ntTSL 1 (best) BASIC16.19■□□□□ 0.18
SSX4O60224 MUC1-212ENST00000457295 1161 ntAPPRIS ALT2 TSL 2 BASIC16.19■□□□□ 0.18
SSX4O60224 AP006284.1-202ENST00000527113 527 ntTSL 4 BASIC16.19■□□□□ 0.18
SSX4O60224 CD320-202ENST00000537716 1119 ntTSL 2 BASIC16.19■□□□□ 0.18
SSX4O60224 TESMIN-209ENST00000544963 1235 ntTSL 1 (best) BASIC16.19■□□□□ 0.18
SSX4O60224 AC011498.2-201ENST00000588798 540 ntTSL 3 BASIC16.19■□□□□ 0.18
SSX4O60224 OBP2B-205ENST00000618116 961 ntAPPRIS P1 TSL 1 (best) BASIC16.19■□□□□ 0.18
SSX4O60224 AL513523.10-201ENST00000623024 1186 ntAPPRIS P1 TSL 5 BASIC16.19■□□□□ 0.18
SSX4O60224 AL023973.1-201ENST00000624619 620 ntBASIC16.19■□□□□ 0.18
SSX4O60224 ECE2-205ENST00000404464 3229 ntTSL 1 (best) BASIC16.19■□□□□ 0.18
SSX4O60224 SLC29A2-206ENST00000546034 2509 ntAPPRIS P1 TSL 5 BASIC16.19■□□□□ 0.18
SSX4O60224 KCNT1-202ENST00000371757 4717 ntAPPRIS P3 TSL 1 (best) BASIC16.19■□□□□ 0.18
Retrieved 100 of 98,524 protein–RNA pairs in 39 ms