Protein–RNA interactions for Protein: H3BMG3

SMKR1, Small lysine-rich protein 1, humanhuman

Predictions only

Length 65 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SMKR1H3BMG3 LINC00511-201ENST00000453722 1716 ntTSL 2 BASIC13.07□□□□□ -0.32
SMKR1H3BMG3 TMEM59L-205ENST00000600490 1717 ntAPPRIS P1 TSL 5 BASIC13.07□□□□□ -0.32
SMKR1H3BMG3 NEO1-206ENST00000558964 4441 ntAPPRIS ALT2 TSL 1 (best) BASIC13.07□□□□□ -0.32
SMKR1H3BMG3 THEM4-201ENST00000368814 2377 ntAPPRIS P1 TSL 1 (best) BASIC13.07□□□□□ -0.32
SMKR1H3BMG3 MPIG6B-204ENST00000375809 2396 ntAPPRIS ALT2 TSL 1 (best) BASIC13.07□□□□□ -0.32
SMKR1H3BMG3 TMEM216-203ENST00000515837 1958 ntAPPRIS P2 TSL 2 BASIC13.07□□□□□ -0.32
SMKR1H3BMG3 VWA1-203ENST00000476993 4511 ntAPPRIS P1 TSL 1 (best) BASIC13.07□□□□□ -0.32
SMKR1H3BMG3 GCSH-209ENST00000639689 2412 ntTSL 5 BASIC13.07□□□□□ -0.32
SMKR1H3BMG3 THOC6-209ENST00000575576 1360 ntTSL 5 BASIC13.07□□□□□ -0.32
SMKR1H3BMG3 PRRT2-216ENST00000637403 2033 ntTSL 5 BASIC13.06□□□□□ -0.32
SMKR1H3BMG3 MTA2-204ENST00000527204 2265 ntTSL 2 BASIC13.06□□□□□ -0.32
SMKR1H3BMG3 DCAF8-218ENST00000610139 1607 ntTSL 1 (best) BASIC13.06□□□□□ -0.32
SMKR1H3BMG3 STK17A-201ENST00000319357 3368 ntAPPRIS P1 TSL 1 (best) BASIC13.06□□□□□ -0.32
SMKR1H3BMG3 ETV7-205ENST00000538992 1434 ntTSL 2 BASIC13.06□□□□□ -0.32
SMKR1H3BMG3 RAP2C-201ENST00000342983 3896 ntAPPRIS P1 TSL 1 (best) BASIC13.06□□□□□ -0.32
SMKR1H3BMG3 MAGI1-202ENST00000402939 4389 ntAPPRIS ALT2 TSL 1 (best) BASIC13.06□□□□□ -0.32
SMKR1H3BMG3 MRPL3-202ENST00000425847 1457 ntTSL 2 BASIC13.06□□□□□ -0.32
SMKR1H3BMG3 AC009102.3-201ENST00000623118 1491 ntBASIC13.06□□□□□ -0.32
SMKR1H3BMG3 PIN1-201ENST00000247970 997 ntAPPRIS P1 TSL 1 (best) BASIC13.06□□□□□ -0.32
SMKR1H3BMG3 COX7A1-201ENST00000292907 762 ntAPPRIS P1 TSL 1 (best) BASIC13.06□□□□□ -0.32
SMKR1H3BMG3 PARL-201ENST00000311101 1240 ntTSL 1 (best) BASIC13.06□□□□□ -0.32
SMKR1H3BMG3 C10orf76-201ENST00000311122 724 ntTSL 1 (best) BASIC13.06□□□□□ -0.32
SMKR1H3BMG3 LRRC26-201ENST00000371542 1209 ntAPPRIS P1 TSL 1 (best) BASIC13.06□□□□□ -0.32
SMKR1H3BMG3 CTNNAL1-202ENST00000374593 761 ntTSL 3 BASIC13.06□□□□□ -0.32
SMKR1H3BMG3 ZDHHC20-204ENST00000415724 1296 ntAPPRIS ALT2 TSL 5 BASIC13.06□□□□□ -0.32
SMKR1H3BMG3 TRNT1-207ENST00000420393 854 ntTSL 3 BASIC13.06□□□□□ -0.32
SMKR1H3BMG3 POM121L13P-201ENST00000422362 380 ntBASIC13.06□□□□□ -0.32
SMKR1H3BMG3 FAM86C1-203ENST00000426628 952 ntAPPRIS ALT2 TSL 2 BASIC13.06□□□□□ -0.32
SMKR1H3BMG3 HAGH-203ENST00000455446 1276 ntTSL 2 BASIC13.06□□□□□ -0.32
SMKR1H3BMG3 ABHD14A-202ENST00000458031 1113 ntTSL 5 BASIC13.06□□□□□ -0.32
SMKR1H3BMG3 ALKAL1-202ENST00000523939 536 ntAPPRIS ALT2 TSL 1 (best) BASIC13.06□□□□□ -0.32
SMKR1H3BMG3 AC022517.1-201ENST00000592429 346 ntBASIC13.06□□□□□ -0.32
SMKR1H3BMG3 TMEM191B-201ENST00000612978 1220 ntAPPRIS P2 TSL 5 BASIC13.06□□□□□ -0.32
SMKR1H3BMG3 SLITRK4-201ENST00000338017 3357 ntAPPRIS P1 TSL 1 (best) BASIC13.06□□□□□ -0.32
SMKR1H3BMG3 SLC22A18-203ENST00000380574 1755 ntAPPRIS P1 TSL 1 (best) BASIC13.06□□□□□ -0.32
SMKR1H3BMG3 SLC7A9-204ENST00000590341 1752 ntAPPRIS P1 TSL 1 (best) BASIC13.06□□□□□ -0.32
SMKR1H3BMG3 ZNF133-204ENST00000396026 2717 ntAPPRIS P3 TSL 3 BASIC13.06□□□□□ -0.32
SMKR1H3BMG3 DFNA5-207ENST00000419307 2265 ntTSL 1 (best) BASIC13.06□□□□□ -0.32
SMKR1H3BMG3 SYTL3-202ENST00000360448 2504 ntAPPRIS ALT1 TSL 5 BASIC13.06□□□□□ -0.32
SMKR1H3BMG3 MAP3K11-201ENST00000309100 3566 ntAPPRIS P1 TSL 1 (best) BASIC13.06□□□□□ -0.32
SMKR1H3BMG3 ZFP28-201ENST00000301318 4096 ntAPPRIS P1 TSL 1 (best) BASIC13.06□□□□□ -0.32
SMKR1H3BMG3 MID1IP1-202ENST00000378474 1889 ntAPPRIS P1 TSL 1 (best) BASIC13.06□□□□□ -0.32
SMKR1H3BMG3 NRXN1-204ENST00000401669 5870 ntAPPRIS ALT1 TSL 5 BASIC13.06□□□□□ -0.32
SMKR1H3BMG3 AC034236.2-201ENST00000606662 1610 ntBASIC13.06□□□□□ -0.32
SMKR1H3BMG3 AMOTL2-211ENST00000513145 2653 ntAPPRIS ALT1 TSL 1 (best) BASIC13.06□□□□□ -0.32
SMKR1H3BMG3 CLDN7-203ENST00000538261 1923 ntTSL 5 BASIC13.05□□□□□ -0.32
SMKR1H3BMG3 GPRIN2-201ENST00000374314 1696 ntAPPRIS P1 BASIC13.05□□□□□ -0.32
SMKR1H3BMG3 ZNF425-201ENST00000378061 3220 ntAPPRIS P1 TSL 1 (best) BASIC13.05□□□□□ -0.32
SMKR1H3BMG3 CTSO-201ENST00000433477 2954 ntAPPRIS P1 TSL 1 (best) BASIC13.05□□□□□ -0.32
SMKR1H3BMG3 AKIP1-207ENST00000529876 1421 ntTSL 2 BASIC13.05□□□□□ -0.32
SMKR1H3BMG3 JMY-201ENST00000396137 9042 ntAPPRIS P1 TSL 5 BASIC13.05□□□□□ -0.32
SMKR1H3BMG3 SHISA9-203ENST00000558583 6724 ntAPPRIS P4 TSL 5 BASIC13.05□□□□□ -0.32
SMKR1H3BMG3 TLE2-204ENST00000455444 2253 ntTSL 5 BASIC13.05□□□□□ -0.32
SMKR1H3BMG3 C19orf66-209ENST00000591813 1481 ntAPPRIS ALT2 TSL 1 (best) BASIC13.05□□□□□ -0.32
SMKR1H3BMG3 MAP2K7-202ENST00000397981 3430 ntTSL 1 (best) BASIC13.05□□□□□ -0.32
SMKR1H3BMG3 PITPNC1-203ENST00000580974 6182 ntAPPRIS ALT2 TSL 1 (best) BASIC13.05□□□□□ -0.32
SMKR1H3BMG3 OSGIN2-202ENST00000451899 4266 ntAPPRIS P1 TSL 1 (best) BASIC13.05□□□□□ -0.32
SMKR1H3BMG3 ERCC2-205ENST00000485403 1538 ntTSL 1 (best) BASIC13.05□□□□□ -0.32
SMKR1H3BMG3 LRRC59-201ENST00000225972 2910 ntAPPRIS P1 TSL 1 (best) BASIC13.05□□□□□ -0.32
SMKR1H3BMG3 AC133561.2-201ENST00000380145 1802 ntTSL 2 BASIC13.05□□□□□ -0.32
SMKR1H3BMG3 SLC12A5-201ENST00000243964 6061 ntAPPRIS P1 TSL 1 (best) BASIC13.05□□□□□ -0.32
SMKR1H3BMG3 HRASLS-201ENST00000264735 1066 ntAPPRIS P1 TSL 1 (best) BASIC13.05□□□□□ -0.32
SMKR1H3BMG3 HLA-DRB1-201ENST00000360004 1229 ntAPPRIS P1 BASIC13.05□□□□□ -0.32
SMKR1H3BMG3 EGFL7-202ENST00000371698 1282 ntAPPRIS P1 TSL 1 (best) BASIC13.05□□□□□ -0.32
SMKR1H3BMG3 HOXA9-202ENST00000396345 797 ntTSL 2 BASIC13.05□□□□□ -0.32
SMKR1H3BMG3 OTUB1-203ENST00000428192 1296 ntAPPRIS P2 TSL 2 BASIC13.05□□□□□ -0.32
SMKR1H3BMG3 AC004980.1-204ENST00000429707 299 ntBASIC13.05□□□□□ -0.32
SMKR1H3BMG3 LINC01637-201ENST00000444039 684 ntTSL 2 BASIC13.05□□□□□ -0.32
SMKR1H3BMG3 LINC00969-218ENST00000452844 583 ntTSL 3 BASIC13.05□□□□□ -0.32
SMKR1H3BMG3 AC079305.3-201ENST00000455416 218 ntTSL 5 BASIC13.05□□□□□ -0.32
SMKR1H3BMG3 LINC00969-221ENST00000457233 1279 ntTSL 1 (best) BASIC13.05□□□□□ -0.32
SMKR1H3BMG3 AL162430.1-201ENST00000480705 870 ntBASIC13.05□□□□□ -0.32
SMKR1H3BMG3 UNC93B4-201ENST00000505679 747 ntBASIC13.05□□□□□ -0.32
SMKR1H3BMG3 ASRGL1-210ENST00000534571 639 ntTSL 2 BASIC13.05□□□□□ -0.32
SMKR1H3BMG3 AC098934.4-201ENST00000564127 592 ntBASIC13.05□□□□□ -0.32
SMKR1H3BMG3 AC007493.2-201ENST00000568427 478 ntTSL 3 BASIC13.05□□□□□ -0.32
SMKR1H3BMG3 WT1-AS_3.1-201ENST00000613262 234 ntBASIC13.05□□□□□ -0.32
SMKR1H3BMG3 MTFP1-206ENST00000629597 482 ntTSL 5 BASIC13.05□□□□□ -0.32
SMKR1H3BMG3 SLC41A3-203ENST00000360370 2169 ntAPPRIS ALT2 TSL 1 (best) BASIC13.05□□□□□ -0.32
SMKR1H3BMG3 MBD1-204ENST00000347968 3091 ntTSL 1 (best) BASIC13.05□□□□□ -0.32
SMKR1H3BMG3 QRICH1-201ENST00000357496 3083 ntAPPRIS P1 TSL 2 BASIC13.05□□□□□ -0.32
SMKR1H3BMG3 MAPK8IP2-202ENST00000329492 3381 ntAPPRIS P1 TSL 1 (best) BASIC13.05□□□□□ -0.32
SMKR1H3BMG3 UAP1L1-202ENST00000409858 3365 ntAPPRIS P1 TSL 1 (best) BASIC13.05□□□□□ -0.32
SMKR1H3BMG3 SMN1-209ENST00000514951 1308 ntTSL 2 BASIC13.05□□□□□ -0.32
SMKR1H3BMG3 ASNS-206ENST00000437628 1638 ntTSL 2 BASIC13.05□□□□□ -0.32
SMKR1H3BMG3 LRRC23-209ENST00000443597 1628 ntAPPRIS P4 TSL 1 (best) BASIC13.05□□□□□ -0.32
SMKR1H3BMG3 AC007743.1-203ENST00000447423 1623 ntTSL 2 BASIC13.05□□□□□ -0.32
SMKR1H3BMG3 LINC01126-201ENST00000623515 1646 ntBASIC13.05□□□□□ -0.32
SMKR1H3BMG3 CHAT-205ENST00000395562 2528 ntAPPRIS ALT2 TSL 1 (best) BASIC13.05□□□□□ -0.32
SMKR1H3BMG3 CBX6-202ENST00000407418 6122 ntAPPRIS P3 TSL 1 (best) BASIC13.05□□□□□ -0.32
SMKR1H3BMG3 SMARCD3-202ENST00000356800 1669 ntTSL 1 (best) BASIC13.05□□□□□ -0.32
SMKR1H3BMG3 SESN1-204ENST00000436639 3509 ntAPPRIS P1 TSL 1 (best) BASIC13.05□□□□□ -0.32
SMKR1H3BMG3 MYB-242ENST00000618728 3545 ntTSL 5 BASIC13.05□□□□□ -0.32
SMKR1H3BMG3 PRRT4-205ENST00000489835 2313 ntTSL 1 (best) BASIC13.05□□□□□ -0.32
SMKR1H3BMG3 SERPINB6-208ENST00000616722 2047 ntTSL 2 BASIC13.05□□□□□ -0.32
SMKR1H3BMG3 MRPL3-201ENST00000264995 1706 ntAPPRIS P1 TSL 1 (best) BASIC13.05□□□□□ -0.32
SMKR1H3BMG3 SYNGAP1-202ENST00000418600 5828 ntTSL 5 BASIC13.05□□□□□ -0.32
SMKR1H3BMG3 PFKFB3-215ENST00000536985 2094 ntTSL 2 BASIC13.04□□□□□ -0.32
SMKR1H3BMG3 MAPK7-201ENST00000299612 2715 ntTSL 1 (best) BASIC13.04□□□□□ -0.32
SMKR1H3BMG3 LIN54-204ENST00000505397 2742 ntAPPRIS P1 TSL 5 BASIC13.04□□□□□ -0.32
Retrieved 100 of 98,524 protein–RNA pairs in 31.6 ms