Protein–RNA interactions for Protein: A6NC98

CCDC88B, Coiled-coil domain-containing protein 88B, humanhuman

Predictions only

Length 1,476 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88BA6NC98 AC005920.1-201ENST00000501718 2054 ntTSL 2 BASIC30.63■■■□□ 2.49
CCDC88BA6NC98 TTC29-201ENST00000325106 1785 ntAPPRIS P3 TSL 1 (best) BASIC30.62■■■□□ 2.49
CCDC88BA6NC98 TTC29-205ENST00000504425 1777 ntAPPRIS ALT2 TSL 5 BASIC30.62■■■□□ 2.49
CCDC88BA6NC98 ZNF296-202ENST00000622376 1631 ntAPPRIS ALT2 TSL 1 (best) BASIC30.62■■■□□ 2.49
CCDC88BA6NC98 HAUS8-201ENST00000253669 1568 ntAPPRIS P3 TSL 1 (best) BASIC30.62■■■□□ 2.49
CCDC88BA6NC98 PIP4K2C-202ENST00000422156 1558 ntTSL 2 BASIC30.62■■■□□ 2.49
CCDC88BA6NC98 RIN1-205ENST00000530056 2122 ntTSL 2 BASIC30.62■■■□□ 2.49
CCDC88BA6NC98 AC025580.3-201ENST00000617932 1424 ntBASIC30.62■■■□□ 2.49
CCDC88BA6NC98 C6orf99-202ENST00000367073 769 ntTSL 5 BASIC30.62■■■□□ 2.49
CCDC88BA6NC98 AC002558.1-201ENST00000488906 803 ntBASIC30.62■■■□□ 2.49
CCDC88BA6NC98 FAM227B-204ENST00000558594 1139 ntAPPRIS ALT2 TSL 5 BASIC30.62■■■□□ 2.49
CCDC88BA6NC98 CYB561-216ENST00000582297 897 ntTSL 3 BASIC30.62■■■□□ 2.49
CCDC88BA6NC98 TMEM37-201ENST00000306406 1688 ntAPPRIS P1 TSL 1 (best) BASIC30.62■■■□□ 2.49
CCDC88BA6NC98 STARD10-213ENST00000538536 1678 ntTSL 1 (best) BASIC30.62■■■□□ 2.49
CCDC88BA6NC98 DTX3-204ENST00000548804 2067 ntAPPRIS P3 TSL 5 BASIC30.62■■■□□ 2.49
CCDC88BA6NC98 HNRNPM-201ENST00000325495 2494 ntAPPRIS P4 TSL 1 (best) BASIC30.61■■■□□ 2.49
CCDC88BA6NC98 MYC-207ENST00000621592 2366 ntAPPRIS ALT1 TSL 1 (best) BASIC30.61■■■□□ 2.49
CCDC88BA6NC98 SIGLEC6-203ENST00000359982 1811 ntAPPRIS ALT2 TSL 2 BASIC30.61■■■□□ 2.49
CCDC88BA6NC98 AL590787.1-201ENST00000568856 1315 ntBASIC30.61■■■□□ 2.49
CCDC88BA6NC98 PFDN6-201ENST00000374606 740 ntAPPRIS P1 TSL 1 (best) BASIC30.61■■■□□ 2.49
CCDC88BA6NC98 SNHG17-206ENST00000436764 973 ntTSL 5 BASIC30.61■■■□□ 2.49
CCDC88BA6NC98 SLC25A36-204ENST00000453248 1040 ntTSL 2 BASIC30.61■■■□□ 2.49
CCDC88BA6NC98 SMN2-210ENST00000511812 867 ntTSL 2 BASIC30.61■■■□□ 2.49
CCDC88BA6NC98 PTPRS-208ENST00000590509 893 ntTSL 1 (best) BASIC30.61■■■□□ 2.49
CCDC88BA6NC98 GGTLC5P-201ENST00000617623 998 ntBASIC30.61■■■□□ 2.49
CCDC88BA6NC98 CTDSPL-206ENST00000443503 4640 ntAPPRIS ALT1 TSL 1 (best) BASIC30.61■■■□□ 2.49
CCDC88BA6NC98 HSD17B6-203ENST00000554150 1547 ntAPPRIS P1 TSL 5 BASIC30.61■■■□□ 2.49
CCDC88BA6NC98 AK3-202ENST00000381809 2736 ntAPPRIS P1 TSL 1 (best) BASIC30.6■■■□□ 2.49
CCDC88BA6NC98 TPSAB1-202ENST00000461509 1357 ntAPPRIS ALT2 TSL 1 (best) BASIC30.6■■■□□ 2.49
CCDC88BA6NC98 SLC38A10-201ENST00000288439 2708 ntAPPRIS P3 TSL 1 (best) BASIC30.6■■■□□ 2.49
CCDC88BA6NC98 CBR1-202ENST00000399191 838 ntTSL 3 BASIC30.6■■■□□ 2.49
CCDC88BA6NC98 ITGB1BP1-205ENST00000456913 1043 ntTSL 2 BASIC30.6■■■□□ 2.49
CCDC88BA6NC98 ITGB1BP1-216ENST00000488451 874 ntTSL 3 BASIC30.6■■■□□ 2.49
CCDC88BA6NC98 AZIN1-AS1-212ENST00000520538 476 ntTSL 3 BASIC30.6■■■□□ 2.49
CCDC88BA6NC98 AC138304.1-201ENST00000563841 424 ntTSL 3 BASIC30.6■■■□□ 2.49
CCDC88BA6NC98 H3F3B-208ENST00000589599 576 ntAPPRIS P1 TSL 3 BASIC30.6■■■□□ 2.49
CCDC88BA6NC98 ALDH3A1-202ENST00000395555 1495 ntTSL 3 BASIC30.6■■■□□ 2.49
CCDC88BA6NC98 NUDT9-201ENST00000302174 1701 ntAPPRIS P1 TSL 1 (best) BASIC30.6■■■□□ 2.49
CCDC88BA6NC98 RAD23A-201ENST00000316856 1736 ntAPPRIS ALT1 TSL 1 (best) BASIC30.6■■■□□ 2.49
CCDC88BA6NC98 TMEM79-203ENST00000405535 2201 ntAPPRIS P1 TSL 1 (best) BASIC30.6■■■□□ 2.49
CCDC88BA6NC98 SPSB1-202ENST00000357898 1439 ntAPPRIS P1 TSL 5 BASIC30.6■■■□□ 2.49
CCDC88BA6NC98 AC074389.1-201ENST00000382528 1423 ntTSL 2 BASIC30.6■■■□□ 2.49
CCDC88BA6NC98 TATDN3-214ENST00000532324 1381 ntTSL 2 BASIC30.59■■■□□ 2.49
CCDC88BA6NC98 THNSL2-203ENST00000377254 1560 ntTSL 2 BASIC30.59■■■□□ 2.49
CCDC88BA6NC98 HMCES-201ENST00000383463 2515 ntAPPRIS P1 TSL 1 (best) BASIC30.59■■■□□ 2.49
CCDC88BA6NC98 TRAPPC12-202ENST00000382110 2483 ntAPPRIS P2 TSL 2 BASIC30.59■■■□□ 2.49
CCDC88BA6NC98 DPM2-201ENST00000314392 1542 ntAPPRIS P1 TSL 1 (best) BASIC30.59■■■□□ 2.49
CCDC88BA6NC98 TMEM216-203ENST00000515837 1958 ntAPPRIS P2 TSL 2 BASIC30.59■■■□□ 2.49
CCDC88BA6NC98 PRUNE2-202ENST00000376713 1069 ntTSL 5 BASIC30.59■■■□□ 2.49
CCDC88BA6NC98 CAMKMT-204ENST00000407131 652 ntTSL 3 BASIC30.59■■■□□ 2.49
CCDC88BA6NC98 AC018685.2-201ENST00000414065 547 ntTSL 4 BASIC30.59■■■□□ 2.49
CCDC88BA6NC98 ARPC4-203ENST00000433034 926 ntTSL 3 BASIC30.59■■■□□ 2.49
CCDC88BA6NC98 AL390729.1-201ENST00000456651 587 ntTSL 2 BASIC30.59■■■□□ 2.49
CCDC88BA6NC98 AC124067.2-201ENST00000521989 510 ntTSL 2 BASIC30.59■■■□□ 2.49
CCDC88BA6NC98 TMEM178A-206ENST00000618232 1286 ntTSL 5 BASIC30.59■■■□□ 2.49
CCDC88BA6NC98 PPP1R3F-202ENST00000376188 2443 ntTSL 2 BASIC30.59■■■□□ 2.49
CCDC88BA6NC98 COL13A1-201ENST00000354547 3027 ntAPPRIS ALT2 TSL 5 BASIC30.59■■■□□ 2.49
CCDC88BA6NC98 RBM14-202ENST00000393979 1426 ntTSL 1 (best) BASIC30.59■■■□□ 2.49
CCDC88BA6NC98 P2RX5-209ENST00000552276 1642 ntAPPRIS ALT2 TSL 5 BASIC30.59■■■□□ 2.49
CCDC88BA6NC98 PML-211ENST00000564428 1985 ntAPPRIS ALT2 TSL 1 (best) BASIC30.59■■■□□ 2.49
CCDC88BA6NC98 KIF25-201ENST00000351261 1326 ntTSL 5 BASIC30.58■■■□□ 2.49
CCDC88BA6NC98 PPP2R2C-206ENST00000507294 1667 ntTSL 2 BASIC30.58■■■□□ 2.49
CCDC88BA6NC98 NMRK2-201ENST00000168977 1126 ntAPPRIS P3 TSL 2 BASIC30.58■■■□□ 2.49
CCDC88BA6NC98 CSNK2B-203ENST00000375882 948 ntAPPRIS P1 TSL 1 (best) BASIC30.58■■■□□ 2.49
CCDC88BA6NC98 AMACR-204ENST00000382085 1195 ntTSL 1 (best) BASIC30.58■■■□□ 2.49
CCDC88BA6NC98 ACTG1P4-201ENST00000425123 1122 ntBASIC30.58■■■□□ 2.49
CCDC88BA6NC98 PXN-AS1-201ENST00000535200 1170 ntTSL 2 BASIC30.58■■■□□ 2.49
CCDC88BA6NC98 TMEM263-206ENST00000550344 925 ntAPPRIS P1 TSL 2 BASIC30.58■■■□□ 2.49
CCDC88BA6NC98 NMRK2-205ENST00000616156 1139 ntAPPRIS ALT2 TSL 5 BASIC30.58■■■□□ 2.49
CCDC88BA6NC98 SLC23A3-207ENST00000455516 2048 ntTSL 2 BASIC30.58■■■□□ 2.49
CCDC88BA6NC98 CBX3P2-201ENST00000579647 1429 ntTSL 2 BASIC30.58■■■□□ 2.49
CCDC88BA6NC98 TPD52L1-202ENST00000368388 2147 ntTSL 1 (best) BASIC30.58■■■□□ 2.49
CCDC88BA6NC98 PCMTD1-206ENST00000521344 1712 ntTSL 3 BASIC30.58■■■□□ 2.49
CCDC88BA6NC98 NUP50-AS1-201ENST00000426282 2076 ntTSL 1 (best) BASIC30.58■■■□□ 2.49
CCDC88BA6NC98 OPCML-202ENST00000374778 1302 ntTSL 1 (best) BASIC30.58■■■□□ 2.49
CCDC88BA6NC98 SOD2-206ENST00000452684 2045 ntTSL 1 (best) BASIC30.58■■■□□ 2.49
CCDC88BA6NC98 ANKRD16-203ENST00000380094 2738 ntAPPRIS P1 TSL 2 BASIC30.58■■■□□ 2.49
CCDC88BA6NC98 PRLH-201ENST00000165524 264 ntAPPRIS P1 TSL 1 (best) BASIC30.57■■■□□ 2.48
CCDC88BA6NC98 AC074386.1-202ENST00000463561 864 ntBASIC30.57■■■□□ 2.48
CCDC88BA6NC98 HADHB-208ENST00000537713 2142 ntTSL 2 BASIC30.57■■■□□ 2.48
CCDC88BA6NC98 NKX6-1-201ENST00000295886 2628 ntAPPRIS P1 TSL 1 (best) BASIC30.57■■■□□ 2.48
CCDC88BA6NC98 SERPINA4-201ENST00000298841 1784 ntAPPRIS P1 TSL 1 (best) BASIC30.57■■■□□ 2.48
CCDC88BA6NC98 HTR1A-201ENST00000323865 1778 ntAPPRIS P1 BASIC30.57■■■□□ 2.48
CCDC88BA6NC98 PSTPIP1-201ENST00000379595 1840 ntAPPRIS ALT1 TSL 5 BASIC30.57■■■□□ 2.48
CCDC88BA6NC98 SLC29A2-201ENST00000311161 2262 ntTSL 1 (best) BASIC30.57■■■□□ 2.48
CCDC88BA6NC98 THAP7-AS1-203ENST00000452284 2298 ntTSL 2 BASIC30.57■■■□□ 2.48
CCDC88BA6NC98 ETV4-201ENST00000319349 2429 ntAPPRIS P1 TSL 1 (best) BASIC30.57■■■□□ 2.48
CCDC88BA6NC98 FAM131A-207ENST00000450976 1335 ntTSL 3 BASIC30.57■■■□□ 2.48
CCDC88BA6NC98 NDUFA3-201ENST00000303553 379 ntTSL 2 BASIC30.57■■■□□ 2.48
CCDC88BA6NC98 ARHGEF4-202ENST00000355771 1872 ntAPPRIS ALT2 TSL 1 (best) BASIC30.57■■■□□ 2.48
CCDC88BA6NC98 ZZZ3-201ENST00000370798 2468 ntTSL 1 (best) BASIC30.57■■■□□ 2.48
CCDC88BA6NC98 PIK3CD-AS2-201ENST00000415330 939 ntTSL 5 BASIC30.57■■■□□ 2.48
CCDC88BA6NC98 ACTG1P14-201ENST00000446382 1122 ntBASIC30.57■■■□□ 2.48
CCDC88BA6NC98 FAM153C-206ENST00000507848 1071 ntAPPRIS ALT2 TSL 2 BASIC30.57■■■□□ 2.48
CCDC88BA6NC98 CCND3-213ENST00000510503 1257 ntTSL 3 BASIC30.57■■■□□ 2.48
CCDC88BA6NC98 AC068137.2-201ENST00000605408 478 ntBASIC30.57■■■□□ 2.48
CCDC88BA6NC98 SLC9A3-AS1-204ENST00000606288 791 ntTSL 2 BASIC30.57■■■□□ 2.48
CCDC88BA6NC98 SWI5-206ENST00000608796 906 ntAPPRIS ALT2 TSL 1 (best) BASIC30.57■■■□□ 2.48
CCDC88BA6NC98 SPDYE5-203ENST00000625065 1700 ntAPPRIS P2 TSL 5 BASIC30.57■■■□□ 2.48
CCDC88BA6NC98 RELA-226ENST00000612991 2266 ntTSL 1 (best) BASIC30.56■■■□□ 2.48
Retrieved 100 of 98,524 protein–RNA pairs in 23.8 ms