Protein–RNA interactions for Protein: Q9UMD9

COL17A1, Collagen alpha-1(XVII) chain, humanhuman

Predicted RBP Predictions only

Length 1,497 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL17A1Q9UMD9 BLACE-201ENST00000378120 2456 ntAPPRIS P1 TSL 1 (best) BASIC26.79■■□□□ 1.88
COL17A1Q9UMD9 ST3GAL3-204ENST00000335430 1805 ntTSL 5 BASIC26.79■■□□□ 1.88
COL17A1Q9UMD9 C1orf43-203ENST00000368516 872 ntTSL 2 BASIC26.79■■□□□ 1.88
COL17A1Q9UMD9 MRPS18AP1-201ENST00000414458 589 ntBASIC26.79■■□□□ 1.88
COL17A1Q9UMD9 GNG4-205ENST00000484517 684 ntAPPRIS P1 TSL 2 BASIC26.79■■□□□ 1.88
COL17A1Q9UMD9 GATB-205ENST00000508611 605 ntTSL 2 BASIC26.79■■□□□ 1.88
COL17A1Q9UMD9 CERNA1-201ENST00000559779 908 ntTSL 3 BASIC26.79■■□□□ 1.88
COL17A1Q9UMD9 AC140878.1-201ENST00000565277 250 ntBASIC26.79■■□□□ 1.88
COL17A1Q9UMD9 GMFG-207ENST00000598034 1028 ntAPPRIS ALT1 TSL 1 (best) BASIC26.79■■□□□ 1.88
COL17A1Q9UMD9 AC084346.2-201ENST00000607097 949 ntBASIC26.79■■□□□ 1.88
COL17A1Q9UMD9 AC116407.2-201ENST00000613639 860 ntBASIC26.79■■□□□ 1.88
COL17A1Q9UMD9 FBP1-201ENST00000375326 1462 ntAPPRIS P1 TSL 1 (best) BASIC26.79■■□□□ 1.88
COL17A1Q9UMD9 AL049757.1-201ENST00000616842 1596 ntBASIC26.79■■□□□ 1.88
COL17A1Q9UMD9 FAM43B-201ENST00000332947 2572 ntAPPRIS P1 BASIC26.78■■□□□ 1.88
COL17A1Q9UMD9 TSPAN4-205ENST00000397406 1426 ntAPPRIS P1 TSL 1 (best) BASIC26.78■■□□□ 1.88
COL17A1Q9UMD9 HOXC4-201ENST00000303406 1524 ntAPPRIS P1 TSL 1 (best) BASIC26.78■■□□□ 1.88
COL17A1Q9UMD9 RELT-202ENST00000393580 2669 ntAPPRIS P1 TSL 1 (best) BASIC26.78■■□□□ 1.88
COL17A1Q9UMD9 CEP85L-205ENST00000419517 2079 ntAPPRIS P3 TSL 1 (best) BASIC26.78■■□□□ 1.88
COL17A1Q9UMD9 AC068888.1-203ENST00000546566 1650 ntTSL 2 BASIC26.78■■□□□ 1.88
COL17A1Q9UMD9 TMEM52-201ENST00000310991 929 ntAPPRIS P2 TSL 1 (best) BASIC26.78■■□□□ 1.88
COL17A1Q9UMD9 VHLL-201ENST00000339922 676 ntAPPRIS P1 BASIC26.78■■□□□ 1.88
COL17A1Q9UMD9 SLC2A8-201ENST00000373352 914 ntTSL 2 BASIC26.78■■□□□ 1.88
COL17A1Q9UMD9 WDR45-208ENST00000396681 1146 ntTSL 5 BASIC26.78■■□□□ 1.88
COL17A1Q9UMD9 ICAM2-202ENST00000418105 1252 ntAPPRIS P1 TSL 3 BASIC26.78■■□□□ 1.88
COL17A1Q9UMD9 PRAP1-201ENST00000433452 971 ntAPPRIS P3 TSL 1 (best) BASIC26.78■■□□□ 1.88
COL17A1Q9UMD9 NKTR-203ENST00000442970 646 ntTSL 2 BASIC26.78■■□□□ 1.88
COL17A1Q9UMD9 AC125807.1-201ENST00000483097 614 ntBASIC26.78■■□□□ 1.88
COL17A1Q9UMD9 MIR210HG-203ENST00000533920 816 ntTSL 2 BASIC26.78■■□□□ 1.88
COL17A1Q9UMD9 ICAM2-208ENST00000579788 1103 ntAPPRIS P1 TSL 1 (best) BASIC26.78■■□□□ 1.88
COL17A1Q9UMD9 SLC9A3-AS1-204ENST00000606288 791 ntTSL 2 BASIC26.78■■□□□ 1.88
COL17A1Q9UMD9 SH3BP2-202ENST00000435136 2318 ntAPPRIS P3 TSL 2 BASIC26.78■■□□□ 1.88
COL17A1Q9UMD9 MFSD11-219ENST00000593181 1922 ntTSL 1 (best) BASIC26.78■■□□□ 1.88
COL17A1Q9UMD9 MUTYH-203ENST00000372098 1839 ntTSL 1 (best) BASIC26.78■■□□□ 1.88
COL17A1Q9UMD9 MUTYH-204ENST00000372104 1823 ntAPPRIS ALT2 TSL 1 (best) BASIC26.78■■□□□ 1.88
COL17A1Q9UMD9 MUTYH-205ENST00000372110 1809 ntTSL 1 (best) BASIC26.78■■□□□ 1.88
COL17A1Q9UMD9 FAM3A-215ENST00000447601 1800 ntAPPRIS P1 TSL 1 (best) BASIC26.78■■□□□ 1.88
COL17A1Q9UMD9 EIF2B1-201ENST00000424014 2477 ntAPPRIS P1 TSL 1 (best) BASIC26.78■■□□□ 1.88
COL17A1Q9UMD9 TBXAS1-206ENST00000425687 2080 ntTSL 1 (best) BASIC26.77■■□□□ 1.88
COL17A1Q9UMD9 DUOXA1-201ENST00000267803 1996 ntTSL 1 (best) BASIC26.77■■□□□ 1.88
COL17A1Q9UMD9 C12orf40-202ENST00000405531 1656 ntAPPRIS ALT2 TSL 1 (best) BASIC26.77■■□□□ 1.88
COL17A1Q9UMD9 ENOPH1-202ENST00000505846 1689 ntTSL 1 (best) BASIC26.77■■□□□ 1.88
COL17A1Q9UMD9 TDG-209ENST00000544861 1387 ntTSL 2 BASIC26.77■■□□□ 1.88
COL17A1Q9UMD9 CCDC62-204ENST00000392441 2936 ntAPPRIS ALT2 TSL 5 BASIC26.77■■□□□ 1.88
COL17A1Q9UMD9 NPM2-201ENST00000289820 1100 ntAPPRIS P2 TSL 1 (best) BASIC26.77■■□□□ 1.88
COL17A1Q9UMD9 LSM1-201ENST00000311351 1147 ntAPPRIS P1 TSL 1 (best) BASIC26.77■■□□□ 1.88
COL17A1Q9UMD9 AC103564.2-201ENST00000432853 1299 ntBASIC26.77■■□□□ 1.88
COL17A1Q9UMD9 CHMP4A-204ENST00000530996 967 ntTSL 3 BASIC26.77■■□□□ 1.88
COL17A1Q9UMD9 AC010336.2-201ENST00000564226 506 ntBASIC26.77■■□□□ 1.88
COL17A1Q9UMD9 AC005330.1-201ENST00000590086 1238 ntTSL 5 BASIC26.77■■□□□ 1.88
COL17A1Q9UMD9 TRIM47-201ENST00000254816 2266 ntAPPRIS P1 TSL 1 (best) BASIC26.77■■□□□ 1.88
COL17A1Q9UMD9 HNRNPA3-204ENST00000435711 1731 ntAPPRIS P3 TSL 1 (best) BASIC26.77■■□□□ 1.88
COL17A1Q9UMD9 AC005906.2-203ENST00000640962 2091 ntTSL 5 BASIC26.77■■□□□ 1.88
COL17A1Q9UMD9 PSMD5-203ENST00000373904 1538 ntTSL 2 BASIC26.77■■□□□ 1.88
COL17A1Q9UMD9 MID1IP1-202ENST00000378474 1889 ntAPPRIS P1 TSL 1 (best) BASIC26.77■■□□□ 1.88
COL17A1Q9UMD9 AC004832.3-202ENST00000439838 1470 ntAPPRIS P1 TSL 2 BASIC26.76■■□□□ 1.88
COL17A1Q9UMD9 IRX5-202ENST00000394636 2401 ntAPPRIS P3 TSL 3 BASIC26.76■■□□□ 1.88
COL17A1Q9UMD9 PCDHA13-203ENST00000617769 2427 ntAPPRIS ALT2 BASIC26.76■■□□□ 1.88
COL17A1Q9UMD9 ESR2-212ENST00000556275 2695 ntTSL 2 BASIC26.76■■□□□ 1.88
COL17A1Q9UMD9 LIM2-201ENST00000221973 983 ntTSL 1 (best) BASIC26.76■■□□□ 1.87
COL17A1Q9UMD9 LGALS7B-201ENST00000314980 483 ntAPPRIS P1 TSL 1 (best) BASIC26.76■■□□□ 1.87
COL17A1Q9UMD9 SYCE1-202ENST00000343131 1113 ntAPPRIS ALT2 TSL 1 (best) BASIC26.76■■□□□ 1.87
COL17A1Q9UMD9 TMEM37-202ENST00000409826 794 ntTSL 3 BASIC26.76■■□□□ 1.87
COL17A1Q9UMD9 SNHG17-206ENST00000436764 973 ntTSL 5 BASIC26.76■■□□□ 1.87
COL17A1Q9UMD9 LINC01818-201ENST00000437118 368 ntTSL 2 BASIC26.76■■□□□ 1.87
COL17A1Q9UMD9 CPLX2-206ENST00000512824 518 ntTSL 4 BASIC26.76■■□□□ 1.87
COL17A1Q9UMD9 DBI-211ENST00000627093 554 ntTSL 1 (best) BASIC26.76■■□□□ 1.87
COL17A1Q9UMD9 SIRPAP1-201ENST00000448467 1770 ntBASIC26.76■■□□□ 1.87
COL17A1Q9UMD9 DUSP7-202ENST00000495880 3340 ntAPPRIS P1 TSL 1 (best) BASIC26.76■■□□□ 1.87
COL17A1Q9UMD9 RIPK2-201ENST00000220751 2584 ntAPPRIS P1 TSL 1 (best) BASIC26.76■■□□□ 1.87
COL17A1Q9UMD9 LAYN-203ENST00000436913 2590 ntTSL 2 BASIC26.76■■□□□ 1.87
COL17A1Q9UMD9 TSNAXIP1-202ENST00000415766 2338 ntAPPRIS ALT2 TSL 2 BASIC26.76■■□□□ 1.87
COL17A1Q9UMD9 BCS1L-202ENST00000392109 1583 ntAPPRIS P1 TSL 1 (best) BASIC26.76■■□□□ 1.87
COL17A1Q9UMD9 BCS1L-204ENST00000392111 1584 ntAPPRIS P1 TSL 1 (best) BASIC26.76■■□□□ 1.87
COL17A1Q9UMD9 CFC1B-202ENST00000619050 1554 ntTSL 5 BASIC26.76■■□□□ 1.87
COL17A1Q9UMD9 YTHDF3-213ENST00000621820 2363 ntTSL 2 BASIC26.76■■□□□ 1.87
COL17A1Q9UMD9 CYP4F8-210ENST00000612078 1889 ntAPPRIS P1 TSL 1 (best) BASIC26.76■■□□□ 1.87
COL17A1Q9UMD9 MAGEF1-201ENST00000317897 1636 ntAPPRIS P1 BASIC26.76■■□□□ 1.87
COL17A1Q9UMD9 GHRHR-201ENST00000326139 1602 ntAPPRIS P1 TSL 1 (best) BASIC26.76■■□□□ 1.87
COL17A1Q9UMD9 CGREF1-205ENST00000404694 1376 ntAPPRIS ALT2 TSL 2 BASIC26.76■■□□□ 1.87
COL17A1Q9UMD9 PAN3-201ENST00000380958 2833 ntAPPRIS P2 TSL 5 BASIC26.76■■□□□ 1.87
COL17A1Q9UMD9 SRSF1-201ENST00000258962 1513 ntAPPRIS P1 TSL 1 (best) BASIC26.75■■□□□ 1.87
COL17A1Q9UMD9 AC007405.3-202ENST00000426475 660 ntTSL 3 BASIC26.75■■□□□ 1.87
COL17A1Q9UMD9 MACROD2-AS1-202ENST00000455291 663 ntTSL 2 BASIC26.75■■□□□ 1.87
COL17A1Q9UMD9 AC112191.1-201ENST00000523689 701 ntBASIC26.75■■□□□ 1.87
COL17A1Q9UMD9 NDUFA4L2-202ENST00000554503 1177 ntAPPRIS P1 TSL 1 (best) BASIC26.75■■□□□ 1.87
COL17A1Q9UMD9 GGTLC5P-201ENST00000617623 998 ntBASIC26.75■■□□□ 1.87
COL17A1Q9UMD9 DAPK2-202ENST00000457488 1741 ntAPPRIS P1 TSL 1 (best) BASIC26.75■■□□□ 1.87
COL17A1Q9UMD9 SEC61A2-201ENST00000298428 1893 ntAPPRIS P1 TSL 1 (best) BASIC26.75■■□□□ 1.87
COL17A1Q9UMD9 SRP68-201ENST00000307877 2649 ntAPPRIS P1 TSL 1 (best) BASIC26.75■■□□□ 1.87
COL17A1Q9UMD9 DOC2A-208ENST00000564944 1782 ntAPPRIS P1 TSL 5 BASIC26.75■■□□□ 1.87
COL17A1Q9UMD9 SAAL1-201ENST00000300013 1518 ntAPPRIS ALT1 TSL 2 BASIC26.75■■□□□ 1.87
COL17A1Q9UMD9 CAP2-202ENST00000378990 1812 ntTSL 2 BASIC26.75■■□□□ 1.87
COL17A1Q9UMD9 NOP14-AS1-202ENST00000505731 1999 ntTSL 2 BASIC26.75■■□□□ 1.87
COL17A1Q9UMD9 GPR3-201ENST00000374024 2115 ntAPPRIS P1 TSL 1 (best) BASIC26.75■■□□□ 1.87
COL17A1Q9UMD9 EYA2-202ENST00000327619 2702 ntAPPRIS P1 TSL 2 BASIC26.75■■□□□ 1.87
COL17A1Q9UMD9 HIRA-201ENST00000263208 4053 ntAPPRIS P1 TSL 1 (best) BASIC26.75■■□□□ 1.87
COL17A1Q9UMD9 MED25-201ENST00000312865 2332 ntAPPRIS P1 TSL 1 (best) BASIC26.74■■□□□ 1.87
COL17A1Q9UMD9 AC093423.3-201ENST00000370453 654 ntAPPRIS P1 TSL 5 BASIC26.74■■□□□ 1.87
COL17A1Q9UMD9 AC078883.2-201ENST00000441212 558 ntTSL 3 BASIC26.74■■□□□ 1.87
COL17A1Q9UMD9 AF131215.3-201ENST00000532453 639 ntTSL 1 (best) BASIC26.74■■□□□ 1.87
Retrieved 100 of 98,524 protein–RNA pairs in 39.3 ms