Protein–RNA interactions for Protein: Q9NZC9

SMARCAL1, SWI/SNF-related matrix-associated actin-dependent regulator of chromatin subfamily A-like protein 1, humanhuman

Predictions only

Length 954 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SMARCAL1Q9NZC9 MIS18BP1-212ENST00000627697 1950 ntTSL 5 BASIC18.81■□□□□ 0.6
SMARCAL1Q9NZC9 PRSS16-201ENST00000230582 2716 ntAPPRIS P1 TSL 1 (best) BASIC18.8■□□□□ 0.6
SMARCAL1Q9NZC9 NTRK1-202ENST00000368196 2701 ntAPPRIS ALT2 TSL 1 (best) BASIC18.8■□□□□ 0.6
SMARCAL1Q9NZC9 REXO1L11P-201ENST00000620964 1927 ntBASIC18.8■□□□□ 0.6
SMARCAL1Q9NZC9 TPR-209ENST00000613151 2478 ntTSL 5 BASIC18.8■□□□□ 0.6
SMARCAL1Q9NZC9 CRKL-201ENST00000354336 5325 ntAPPRIS P1 TSL 1 (best) BASIC18.8■□□□□ 0.6
SMARCAL1Q9NZC9 CDK4-201ENST00000257904 2076 ntAPPRIS P1 TSL 1 (best) BASIC18.8■□□□□ 0.6
SMARCAL1Q9NZC9 ARSE-201ENST00000381134 1853 ntAPPRIS P1 TSL 1 (best) BASIC18.8■□□□□ 0.6
SMARCAL1Q9NZC9 RASSF8-AS1-202ENST00000500276 2610 ntTSL 2 BASIC18.8■□□□□ 0.6
SMARCAL1Q9NZC9 CES3-203ENST00000543856 3178 ntTSL 2 BASIC18.8■□□□□ 0.6
SMARCAL1Q9NZC9 RIC8B-203ENST00000392839 2440 ntAPPRIS P3 TSL 1 (best) BASIC18.8■□□□□ 0.6
SMARCAL1Q9NZC9 KRT13-201ENST00000246635 1699 ntAPPRIS P4 TSL 1 (best) BASIC18.8■□□□□ 0.6
SMARCAL1Q9NZC9 TBC1D10C-209ENST00000542590 1659 ntAPPRIS P1 TSL 1 (best) BASIC18.8■□□□□ 0.6
SMARCAL1Q9NZC9 DYRK1B-203ENST00000430012 2007 ntAPPRIS ALT1 TSL 5 BASIC18.8■□□□□ 0.6
SMARCAL1Q9NZC9 RRM2-202ENST00000360566 3673 ntTSL 1 (best) BASIC18.8■□□□□ 0.6
SMARCAL1Q9NZC9 CBS-202ENST00000359624 2353 ntAPPRIS P1 TSL 1 (best) BASIC18.8■□□□□ 0.6
SMARCAL1Q9NZC9 CBSL-203ENST00000618024 2353 ntAPPRIS P1 TSL 1 (best) BASIC18.8■□□□□ 0.6
SMARCAL1Q9NZC9 FDXR-205ENST00000544854 1827 ntTSL 2 BASIC18.8■□□□□ 0.6
SMARCAL1Q9NZC9 SBSPON-201ENST00000297354 3801 ntAPPRIS P1 TSL 1 (best) BASIC18.8■□□□□ 0.6
SMARCAL1Q9NZC9 AL357874.1-201ENST00000428948 574 ntTSL 1 (best) BASIC18.8■□□□□ 0.6
SMARCAL1Q9NZC9 METTL21A-206ENST00000432416 869 ntTSL 3 BASIC18.8■□□□□ 0.6
SMARCAL1Q9NZC9 ZNF706-206ENST00000519744 785 ntTSL 3 BASIC18.8■□□□□ 0.6
SMARCAL1Q9NZC9 GRAMD4P8-201ENST00000605465 1115 ntBASIC18.8■□□□□ 0.6
SMARCAL1Q9NZC9 LRRC23-209ENST00000443597 1628 ntAPPRIS P4 TSL 1 (best) BASIC18.8■□□□□ 0.6
SMARCAL1Q9NZC9 PDX1-201ENST00000381033 2501 ntAPPRIS P1 TSL 1 (best) BASIC18.8■□□□□ 0.6
SMARCAL1Q9NZC9 SERPINA4-202ENST00000555095 1987 ntAPPRIS P1 TSL 1 (best) BASIC18.8■□□□□ 0.6
SMARCAL1Q9NZC9 TRIM27-201ENST00000377194 2686 ntTSL 1 (best) BASIC18.8■□□□□ 0.6
SMARCAL1Q9NZC9 FBXW9-203ENST00000587955 1437 ntTSL 1 (best) BASIC18.8■□□□□ 0.6
SMARCAL1Q9NZC9 MACF1-233ENST00000602421 1423 ntTSL 2 BASIC18.8■□□□□ 0.6
SMARCAL1Q9NZC9 PRPF31-202ENST00000391755 1767 ntTSL 5 BASIC18.8■□□□□ 0.6
SMARCAL1Q9NZC9 MAPK8IP1-202ENST00000395629 3180 ntTSL 5 BASIC18.8■□□□□ 0.6
SMARCAL1Q9NZC9 MREG-205ENST00000620139 2618 ntAPPRIS P1 TSL 2 BASIC18.8■□□□□ 0.6
SMARCAL1Q9NZC9 GPAT2-201ENST00000359548 2761 ntAPPRIS P1 TSL 1 (best) BASIC18.8■□□□□ 0.6
SMARCAL1Q9NZC9 SMAD4-201ENST00000342988 8769 ntAPPRIS P1 TSL 5 BASIC18.8■□□□□ 0.6
SMARCAL1Q9NZC9 TMEM175-201ENST00000264771 1860 ntAPPRIS P1 TSL 1 (best) BASIC18.8■□□□□ 0.6
SMARCAL1Q9NZC9 LINC00847-201ENST00000501855 1871 ntTSL 1 (best) BASIC18.8■□□□□ 0.6
SMARCAL1Q9NZC9 SMO-201ENST00000249373 3738 ntAPPRIS P1 TSL 1 (best) BASIC18.79■□□□□ 0.6
SMARCAL1Q9NZC9 UBN1-201ENST00000262376 6252 ntAPPRIS P1 TSL 1 (best) BASIC18.79■□□□□ 0.6
SMARCAL1Q9NZC9 NR1H2-202ENST00000411902 1466 ntTSL 1 (best) BASIC18.79■□□□□ 0.6
SMARCAL1Q9NZC9 AGGF1P2-201ENST00000426656 2106 ntBASIC18.79■□□□□ 0.6
SMARCAL1Q9NZC9 HADHB-208ENST00000537713 2142 ntTSL 2 BASIC18.79■□□□□ 0.6
SMARCAL1Q9NZC9 MARK4-210ENST00000620044 2105 ntTSL 5 BASIC18.79■□□□□ 0.6
SMARCAL1Q9NZC9 ZNF514-202ENST00000411425 2755 ntAPPRIS P1 TSL 1 (best) BASIC18.79■□□□□ 0.6
SMARCAL1Q9NZC9 AL079301.1-201ENST00000424580 1633 ntTSL 2 BASIC18.79■□□□□ 0.6
SMARCAL1Q9NZC9 AL121761.2-201ENST00000598007 1648 ntBASIC18.79■□□□□ 0.6
SMARCAL1Q9NZC9 NIPA2-201ENST00000337451 3233 ntAPPRIS P1 TSL 5 BASIC18.79■□□□□ 0.6
SMARCAL1Q9NZC9 APBA2-207ENST00000558402 4031 ntAPPRIS P1 TSL 5 BASIC18.79■□□□□ 0.6
SMARCAL1Q9NZC9 DMKN-201ENST00000339686 1927 ntAPPRIS P3 TSL 1 (best) BASIC18.79■□□□□ 0.6
SMARCAL1Q9NZC9 MAEA-219ENST00000514708 1945 ntTSL 2 BASIC18.79■□□□□ 0.6
SMARCAL1Q9NZC9 C17orf62-203ENST00000434650 2050 ntTSL 2 BASIC18.79■□□□□ 0.6
SMARCAL1Q9NZC9 UNC93B2-201ENST00000285383 730 ntBASIC18.79■□□□□ 0.6
SMARCAL1Q9NZC9 TCTEX1D2-201ENST00000325318 673 ntAPPRIS P1 TSL 1 (best) BASIC18.79■□□□□ 0.6
SMARCAL1Q9NZC9 UBB-203ENST00000395839 1012 ntAPPRIS P1 TSL 2 BASIC18.79■□□□□ 0.6
SMARCAL1Q9NZC9 HDAC11-203ENST00000402271 1018 ntTSL 3 BASIC18.79■□□□□ 0.6
SMARCAL1Q9NZC9 RNF144A-AS1-205ENST00000439208 757 ntTSL 3 BASIC18.79■□□□□ 0.6
SMARCAL1Q9NZC9 RBM17P1-201ENST00000453646 1190 ntBASIC18.79■□□□□ 0.6
SMARCAL1Q9NZC9 PHF11-218ENST00000496623 1173 ntAPPRIS ALT2 TSL 2 BASIC18.79■□□□□ 0.6
SMARCAL1Q9NZC9 WWOX-216ENST00000569818 525 ntBASIC18.79■□□□□ 0.6
SMARCAL1Q9NZC9 SMAGP-204ENST00000603838 816 ntTSL 2 BASIC18.79■□□□□ 0.6
SMARCAL1Q9NZC9 AC112497.1-201ENST00000624824 639 ntBASIC18.79■□□□□ 0.6
SMARCAL1Q9NZC9 AL590094.1-202ENST00000634619 1131 ntTSL 5 BASIC18.79■□□□□ 0.6
SMARCAL1Q9NZC9 ASIC3-203ENST00000357922 2232 ntTSL 1 (best) BASIC18.79■□□□□ 0.6
SMARCAL1Q9NZC9 POLR3E-203ENST00000418581 2529 ntTSL 2 BASIC18.79■□□□□ 0.6
SMARCAL1Q9NZC9 MAP4K1-201ENST00000396857 2653 ntAPPRIS P1 TSL 5 BASIC18.79■□□□□ 0.6
SMARCAL1Q9NZC9 PCDH8P1-201ENST00000428983 2773 ntBASIC18.79■□□□□ 0.6
SMARCAL1Q9NZC9 ARHGEF28-203ENST00000426542 6118 ntAPPRIS ALT2 TSL 1 (best) BASIC18.79■□□□□ 0.6
SMARCAL1Q9NZC9 IRGC-201ENST00000244314 1662 ntAPPRIS P1 TSL 1 (best) BASIC18.79■□□□□ 0.6
SMARCAL1Q9NZC9 AC009949.1-201ENST00000623048 1830 ntBASIC18.79■□□□□ 0.6
SMARCAL1Q9NZC9 VPS37C-201ENST00000301765 2865 ntAPPRIS P1 TSL 1 (best) BASIC18.79■□□□□ 0.6
SMARCAL1Q9NZC9 PARP9-204ENST00000471785 3040 ntAPPRIS ALT2 TSL 2 BASIC18.79■□□□□ 0.6
SMARCAL1Q9NZC9 SURF4-208ENST00000613129 3148 ntTSL 2 BASIC18.78■□□□□ 0.6
SMARCAL1Q9NZC9 SYTL3-202ENST00000360448 2504 ntAPPRIS ALT1 TSL 5 BASIC18.78■□□□□ 0.6
SMARCAL1Q9NZC9 COL18A1-202ENST00000355480 5924 ntAPPRIS P3 TSL 1 (best) BASIC18.78■□□□□ 0.6
SMARCAL1Q9NZC9 SMARCB1-204ENST00000407422 1643 ntAPPRIS ALT1 TSL 1 (best) BASIC18.78■□□□□ 0.6
SMARCAL1Q9NZC9 SEL1L-204ENST00000555824 1631 ntTSL 1 (best) BASIC18.78■□□□□ 0.6
SMARCAL1Q9NZC9 PCDHA2-201ENST00000378132 2626 ntAPPRIS ALT2 BASIC18.78■□□□□ 0.6
SMARCAL1Q9NZC9 MRC2-201ENST00000303375 5988 ntAPPRIS P1 TSL 1 (best) BASIC18.78■□□□□ 0.6
SMARCAL1Q9NZC9 GNA13-201ENST00000439174 4922 ntAPPRIS P1 TSL 1 (best) BASIC18.78■□□□□ 0.6
SMARCAL1Q9NZC9 AP000347.2-202ENST00000421064 3041 ntTSL 1 (best) BASIC18.78■□□□□ 0.6
SMARCAL1Q9NZC9 GUCA1A-202ENST00000372958 1575 ntAPPRIS P1 TSL 1 (best) BASIC18.78■□□□□ 0.6
SMARCAL1Q9NZC9 KRT8P7-201ENST00000533003 1432 ntBASIC18.78■□□□□ 0.6
SMARCAL1Q9NZC9 HAUS1-201ENST00000282058 1125 ntAPPRIS P1 TSL 1 (best) BASIC18.78■□□□□ 0.6
SMARCAL1Q9NZC9 TMIGD2-201ENST00000301272 1262 ntAPPRIS P3 TSL 1 (best) BASIC18.78■□□□□ 0.6
SMARCAL1Q9NZC9 AC073343.2-203ENST00000366167 564 ntTSL 4 BASIC18.78■□□□□ 0.6
SMARCAL1Q9NZC9 SLC22A11-203ENST00000377585 2124 ntTSL 2 BASIC18.78■□□□□ 0.6
SMARCAL1Q9NZC9 AL596275.1-201ENST00000423464 877 ntBASIC18.78■□□□□ 0.6
SMARCAL1Q9NZC9 CDC42EP2-202ENST00000533419 1279 ntAPPRIS P1 TSL 3 BASIC18.78■□□□□ 0.6
SMARCAL1Q9NZC9 AL355075.4-201ENST00000554988 638 ntBASIC18.78■□□□□ 0.6
SMARCAL1Q9NZC9 C16orf74-202ENST00000602583 1237 ntAPPRIS ALT2 TSL 1 (best) BASIC18.78■□□□□ 0.6
SMARCAL1Q9NZC9 TPSB2-201ENST00000606293 1165 ntAPPRIS ALT2 TSL 1 (best) BASIC18.78■□□□□ 0.6
SMARCAL1Q9NZC9 CMIP-201ENST00000398040 2825 ntTSL 1 (best) BASIC18.78■□□□□ 0.6
SMARCAL1Q9NZC9 SYT3-202ENST00000593901 2836 ntAPPRIS P1 TSL 1 (best) BASIC18.78■□□□□ 0.6
SMARCAL1Q9NZC9 ARHGEF18-201ENST00000319670 5212 ntAPPRIS P3 TSL 1 (best) BASIC18.78■□□□□ 0.6
SMARCAL1Q9NZC9 GBA2-201ENST00000378088 1672 ntTSL 2 BASIC18.78■□□□□ 0.6
SMARCAL1Q9NZC9 AC140125.2-201ENST00000502515 1517 ntTSL 1 (best) BASIC18.78■□□□□ 0.6
SMARCAL1Q9NZC9 BDKRB1-202ENST00000553356 1526 ntTSL 1 (best) BASIC18.78■□□□□ 0.6
SMARCAL1Q9NZC9 APIP-201ENST00000395787 1366 ntAPPRIS P1 TSL 1 (best) BASIC18.78■□□□□ 0.6
SMARCAL1Q9NZC9 SRSF12-201ENST00000452027 3599 ntAPPRIS P1 TSL 1 (best) BASIC18.78■□□□□ 0.6
SMARCAL1Q9NZC9 MAGEA3-203ENST00000598245 1762 ntAPPRIS P1 TSL 2 BASIC18.78■□□□□ 0.6
SMARCAL1Q9NZC9 MAGEA6-204ENST00000616035 1762 ntAPPRIS P1 TSL 5 BASIC18.78■□□□□ 0.6
Retrieved 100 of 98,524 protein–RNA pairs in 55 ms