Protein–RNA interactions for Protein: Q9H239

MMP28, Matrix metalloproteinase-28, humanhuman

Predictions only

Length 520 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
MMP28Q9H239 TMEM191C-214ENST00000621561 1337 ntAPPRIS P2 TSL 5 BASIC15.81■□□□□ 0.12
MMP28Q9H239 SLC12A2-208ENST00000628403 3617 ntAPPRIS ALT2 TSL 5 BASIC15.81■□□□□ 0.12
MMP28Q9H239 NDRG1-202ENST00000414097 3755 ntAPPRIS P1 TSL 2 BASIC15.81■□□□□ 0.12
MMP28Q9H239 KIF5C-201ENST00000435030 6931 ntAPPRIS P1 TSL 1 (best) BASIC15.81■□□□□ 0.12
MMP28Q9H239 ZNF764-202ENST00000395091 2970 ntAPPRIS ALT1 TSL 2 BASIC15.81■□□□□ 0.12
MMP28Q9H239 NPAS3-202ENST00000356141 2802 ntAPPRIS ALT2 TSL 1 (best) BASIC15.81■□□□□ 0.12
MMP28Q9H239 GIT2-202ENST00000354574 5387 ntTSL 5 BASIC15.81■□□□□ 0.12
MMP28Q9H239 PHGDH-223ENST00000641597 2585 ntAPPRIS P1 BASIC15.81■□□□□ 0.12
MMP28Q9H239 CCDC155-201ENST00000447857 2378 ntAPPRIS P2 TSL 1 (best) BASIC15.8■□□□□ 0.12
MMP28Q9H239 BEST2-202ENST00000549706 2183 ntAPPRIS P1 TSL 5 BASIC15.8■□□□□ 0.12
MMP28Q9H239 SFTPB-202ENST00000409383 1867 ntAPPRIS P2 TSL 1 (best) BASIC15.8■□□□□ 0.12
MMP28Q9H239 GOLGA6L5P-202ENST00000515341 1828 ntBASIC15.8■□□□□ 0.12
MMP28Q9H239 CELF2-217ENST00000638035 1849 ntAPPRIS P3 TSL 5 BASIC15.8■□□□□ 0.12
MMP28Q9H239 PDLIM3-202ENST00000284770 1766 ntTSL 1 (best) BASIC15.8■□□□□ 0.12
MMP28Q9H239 JKAMP-201ENST00000261247 1726 ntAPPRIS P1 TSL 1 (best) BASIC15.8■□□□□ 0.12
MMP28Q9H239 REEP4-201ENST00000306306 1710 ntAPPRIS P1 TSL 1 (best) BASIC15.8■□□□□ 0.12
MMP28Q9H239 WBP2-213ENST00000590221 1745 ntAPPRIS ALT1 TSL 3 BASIC15.8■□□□□ 0.12
MMP28Q9H239 DUSP15-209ENST00000486996 1651 ntTSL 2 BASIC15.8■□□□□ 0.12
MMP28Q9H239 OGFOD2-211ENST00000538628 1696 ntTSL 1 (best) BASIC15.8■□□□□ 0.12
MMP28Q9H239 BACE1-201ENST00000313005 6326 ntAPPRIS P1 TSL 1 (best) BASIC15.8■□□□□ 0.12
MMP28Q9H239 TH-202ENST00000333684 1535 ntTSL 1 (best) BASIC15.8■□□□□ 0.12
MMP28Q9H239 TICAM2-201ENST00000427199 3049 ntAPPRIS P1 TSL 1 (best) BASIC15.8■□□□□ 0.12
MMP28Q9H239 FBXO21-201ENST00000330622 2906 ntAPPRIS P3 TSL 1 (best) BASIC15.8■□□□□ 0.12
MMP28Q9H239 NEURL1B-201ENST00000369800 6424 ntAPPRIS P1 TSL 1 (best) BASIC15.8■□□□□ 0.12
MMP28Q9H239 RPP25L-201ENST00000297613 1092 ntAPPRIS P1 TSL 2 BASIC15.8■□□□□ 0.12
MMP28Q9H239 HOXD12-201ENST00000404162 841 ntTSL 1 (best) BASIC15.8■□□□□ 0.12
MMP28Q9H239 AC110769.1-201ENST00000420161 815 ntTSL 3 BASIC15.8■□□□□ 0.12
MMP28Q9H239 LTB-210ENST00000429299 897 ntAPPRIS P1 TSL 1 (best) BASIC15.8■□□□□ 0.12
MMP28Q9H239 SBF2-AS1-202ENST00000499953 854 ntTSL 5 BASIC15.8■□□□□ 0.12
MMP28Q9H239 MIXL1-202ENST00000542034 839 ntTSL 1 (best) BASIC15.8■□□□□ 0.12
MMP28Q9H239 UBALD1-209ENST00000591897 1275 ntTSL 2 BASIC15.8■□□□□ 0.12
MMP28Q9H239 AC010531.6-201ENST00000602282 401 ntTSL 2 BASIC15.8■□□□□ 0.12
MMP28Q9H239 MYC-208ENST00000641036 567 ntBASIC15.8■□□□□ 0.12
MMP28Q9H239 RHOBTB1-201ENST00000337910 4473 ntAPPRIS P1 TSL 1 (best) BASIC15.8■□□□□ 0.12
MMP28Q9H239 ST3GAL2-201ENST00000342907 4450 ntAPPRIS P1 TSL 5 BASIC15.8■□□□□ 0.12
MMP28Q9H239 MIB2-217ENST00000504599 3311 ntAPPRIS ALT2 TSL 2 BASIC15.8■□□□□ 0.12
MMP28Q9H239 NFATC4-203ENST00000422617 5491 ntAPPRIS ALT2 TSL 1 (best) BASIC15.8■□□□□ 0.12
MMP28Q9H239 GNG2-213ENST00000556766 2125 ntAPPRIS P1 TSL 1 (best) BASIC15.8■□□□□ 0.12
MMP28Q9H239 TTC13-202ENST00000366662 3112 ntAPPRIS ALT2 TSL 1 (best) BASIC15.8■□□□□ 0.12
MMP28Q9H239 AL096828.2-201ENST00000567259 1965 ntBASIC15.8■□□□□ 0.12
MMP28Q9H239 ANXA8-202ENST00000583448 1971 ntTSL 1 (best) BASIC15.8■□□□□ 0.12
MMP28Q9H239 ACTB-201ENST00000331789 1917 ntAPPRIS P1 TSL 1 (best) BASIC15.8■□□□□ 0.12
MMP28Q9H239 CD34-202ENST00000356522 2874 ntTSL 1 (best) BASIC15.8■□□□□ 0.12
MMP28Q9H239 DGKZ-202ENST00000343674 3816 ntAPPRIS P3 TSL 2 BASIC15.8■□□□□ 0.12
MMP28Q9H239 COQ7-201ENST00000321998 2657 ntAPPRIS P3 TSL 1 (best) BASIC15.8■□□□□ 0.12
MMP28Q9H239 TCF3-212ENST00000588136 2658 ntAPPRIS ALT2 TSL 2 BASIC15.8■□□□□ 0.12
MMP28Q9H239 NCK2-205ENST00000451463 1795 ntTSL 2 BASIC15.8■□□□□ 0.12
MMP28Q9H239 B4GALNT4-201ENST00000329962 3444 ntAPPRIS P1 TSL 1 (best) BASIC15.8■□□□□ 0.12
MMP28Q9H239 C18orf63-201ENST00000579455 5127 ntAPPRIS P1 TSL 1 (best) BASIC15.8■□□□□ 0.12
MMP28Q9H239 SBDS-201ENST00000246868 1631 ntAPPRIS P2 TSL 1 (best) BASIC15.79■□□□□ 0.12
MMP28Q9H239 PSMD12-202ENST00000357146 2437 ntTSL 2 BASIC15.79■□□□□ 0.12
MMP28Q9H239 TRABD2A-202ENST00000409133 1554 ntTSL 1 (best) BASIC15.79■□□□□ 0.12
MMP28Q9H239 TXNDC11-201ENST00000283033 3140 ntAPPRIS P3 TSL 2 BASIC15.79■□□□□ 0.12
MMP28Q9H239 OGFOD2-202ENST00000397389 2308 ntTSL 2 BASIC15.79■□□□□ 0.12
MMP28Q9H239 HNF1A-215ENST00000615446 2344 ntTSL 5 BASIC15.79■□□□□ 0.12
MMP28Q9H239 SNAPC2-201ENST00000221573 1542 ntAPPRIS P1 TSL 1 (best) BASIC15.79■□□□□ 0.12
MMP28Q9H239 HMBS-214ENST00000542729 1469 ntTSL 2 BASIC15.79■□□□□ 0.12
MMP28Q9H239 C19orf66-209ENST00000591813 1481 ntAPPRIS ALT2 TSL 1 (best) BASIC15.79■□□□□ 0.12
MMP28Q9H239 MEF2B-204ENST00000424583 1405 ntAPPRIS P1 TSL 5 BASIC15.79■□□□□ 0.12
MMP28Q9H239 GPR75-201ENST00000394705 2115 ntAPPRIS P1 TSL 1 (best) BASIC15.79■□□□□ 0.12
MMP28Q9H239 MAD1L1-202ENST00000399654 2762 ntAPPRIS P1 TSL 5 BASIC15.79■□□□□ 0.12
MMP28Q9H239 IL15-208ENST00000529613 1355 ntAPPRIS P1 TSL 5 BASIC15.79■□□□□ 0.12
MMP28Q9H239 AMOTL2-211ENST00000513145 2653 ntAPPRIS ALT1 TSL 1 (best) BASIC15.79■□□□□ 0.12
MMP28Q9H239 TSPY8-201ENST00000287721 1161 ntAPPRIS P5 TSL 1 (best) BASIC15.79■□□□□ 0.12
MMP28Q9H239 CXCL3-201ENST00000296026 1075 ntAPPRIS P1 TSL 1 (best) BASIC15.79■□□□□ 0.12
MMP28Q9H239 C6orf132-202ENST00000356542 894 ntAPPRIS ALT2 TSL 2 BASIC15.79■□□□□ 0.12
MMP28Q9H239 UBE2F-203ENST00000409633 837 ntTSL 3 BASIC15.79■□□□□ 0.12
MMP28Q9H239 TSPY10-201ENST00000428845 1161 ntAPPRIS P5 TSL 1 (best) BASIC15.79■□□□□ 0.12
MMP28Q9H239 Z98884.1-201ENST00000451646 830 ntTSL 3 BASIC15.79■□□□□ 0.12
MMP28Q9H239 TSPY3-203ENST00000457222 1161 ntAPPRIS P5 TSL 1 (best) BASIC15.79■□□□□ 0.12
MMP28Q9H239 KRTAP5-11-203ENST00000617152 558 ntAPPRIS ALT2 TSL 5 BASIC15.79■□□□□ 0.12
MMP28Q9H239 MTFP1-206ENST00000629597 482 ntTSL 5 BASIC15.79■□□□□ 0.12
MMP28Q9H239 YY1AP1-210ENST00000368339 3073 ntAPPRIS ALT2 TSL 2 BASIC15.79■□□□□ 0.12
MMP28Q9H239 CLEC18B-206ENST00000620745 1847 ntTSL 5 BASIC15.79■□□□□ 0.12
MMP28Q9H239 PTK6-202ENST00000542869 2931 ntAPPRIS P1 TSL 1 (best) BASIC15.79■□□□□ 0.12
MMP28Q9H239 CLN3-204ENST00000357857 1720 ntTSL 2 BASIC15.79■□□□□ 0.12
MMP28Q9H239 LMNA-205ENST00000368299 2253 ntTSL 1 (best) BASIC15.79■□□□□ 0.12
MMP28Q9H239 CACFD1-202ENST00000316948 2794 ntAPPRIS P3 TSL 1 (best) BASIC15.79■□□□□ 0.12
MMP28Q9H239 ABHD14B-202ENST00000361143 1636 ntAPPRIS P1 TSL 1 (best) BASIC15.79■□□□□ 0.12
MMP28Q9H239 ZNF84-208ENST00000539354 3237 ntAPPRIS P2 TSL 1 (best) BASIC15.79■□□□□ 0.12
MMP28Q9H239 DLG4-201ENST00000302955 3184 ntAPPRIS P3 TSL 5 BASIC15.79■□□□□ 0.12
MMP28Q9H239 DLG4-202ENST00000399506 3185 ntAPPRIS ALT1 TSL 2 BASIC15.79■□□□□ 0.12
MMP28Q9H239 PPFIA3-201ENST00000334186 4733 ntAPPRIS P1 TSL 1 (best) BASIC15.79■□□□□ 0.12
MMP28Q9H239 KXD1-203ENST00000540691 1592 ntAPPRIS P1 TSL 3 BASIC15.79■□□□□ 0.12
MMP28Q9H239 MRPS2-201ENST00000241600 1510 ntAPPRIS P1 TSL 1 (best) BASIC15.78■□□□□ 0.12
MMP28Q9H239 TMPRSS5-209ENST00000544634 1524 ntTSL 2 BASIC15.78■□□□□ 0.12
MMP28Q9H239 CTSB-228ENST00000533455 2009 ntAPPRIS P1 TSL 1 (best) BASIC15.78■□□□□ 0.12
MMP28Q9H239 TMPRSS13-203ENST00000524993 1950 ntAPPRIS P3 TSL 1 (best) BASIC15.78■□□□□ 0.12
MMP28Q9H239 LINC02361-201ENST00000538731 1484 ntTSL 2 BASIC15.78■□□□□ 0.12
MMP28Q9H239 EPOR-201ENST00000222139 2411 ntAPPRIS P1 TSL 1 (best) BASIC15.78■□□□□ 0.12
MMP28Q9H239 SLITRK4-201ENST00000338017 3357 ntAPPRIS P1 TSL 1 (best) BASIC15.78■□□□□ 0.12
MMP28Q9H239 KLHDC3-201ENST00000244670 1903 ntTSL 1 (best) BASIC15.78■□□□□ 0.12
MMP28Q9H239 GRIA4-203ENST00000393127 5621 ntTSL 5 BASIC15.78■□□□□ 0.12
MMP28Q9H239 CEMP1-202ENST00000567119 1374 ntAPPRIS P2 BASIC15.78■□□□□ 0.12
MMP28Q9H239 PSTPIP1-201ENST00000379595 1840 ntAPPRIS ALT1 TSL 5 BASIC15.78■□□□□ 0.12
MMP28Q9H239 PODNL1-203ENST00000538371 1826 ntAPPRIS ALT2 TSL 2 BASIC15.78■□□□□ 0.12
MMP28Q9H239 AC092850.2-201ENST00000623821 2697 ntBASIC15.78■□□□□ 0.12
MMP28Q9H239 FBXO28-202ENST00000424254 1334 ntTSL 1 (best) BASIC15.78■□□□□ 0.12
MMP28Q9H239 CLDND1-204ENST00000394185 2159 ntAPPRIS P1 TSL 5 BASIC15.78■□□□□ 0.12
MMP28Q9H239 RASD1-201ENST00000225688 1746 ntAPPRIS P1 TSL 1 (best) BASIC15.78■□□□□ 0.12
Retrieved 100 of 98,524 protein–RNA pairs in 42 ms